| mature miRNA: TCCACAGGCTTTCTTGAACTG species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|14525780|gb|AV833691.1|AV833691 AV833691 K. Sato unpublished cDNA library: Hordeum vulgare subsp. vulgare shoots germination TCCACAGGCTTT-CTTGAACTG EST sequence (targeted fragment marked with yellow): GTACTGCGAGCGCCACATGCACCGCGGCCGCAACCGTTCAAGNAAAGCCTGTGGAAACGCAGCTCGTCGCCAGCTCCCACTCCCAGTCCCAGCAGCACGCCACCGCCGCCTTCCACAACCACTCGCCGTATCCGGCGATCGCCACTGGCGGTGGCTCCTTCGCCCTGGGGTCTGCTCAGCTGCACATGGACACTGCTGCGCCTTACGCGACGACCGCCGGTGCTGCCGGAAACAAAGATTTCAGGTATTCTGCCTATGGAGTGAGGACGTCGGCGATCGAGGAGCACAACCAGTTCATCACCGCGGCCATGGACACCGCCATGGACAACTACTCGTGGCGCCTGATGCCGTCCCAGGCCTCGGCATTCTCGCTCTCCAGCTACCCCATGCTGGGCACGCTGAGCGACCTGGACCAGAGCGCGATCTGCTCGCTGGCCAAGACTGAGAGGGAGCCACTGTCCTTCTTCGGCGGCGGCGGCGACTTCGACGACGACTCGGCTGCG | |||||||||
gi|30055474|gb|CB860915.1|CB860915 HH03P08w HH Hordeum vulgare cDNA clone HH03P08 5-PRIME, mRNA sequence TCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CACGCGTCCGGGCGGACGGTCGGCAAGAAGTGGCGCTGCTCCAGGGAGGCGTACCCAGACTCCAAGTACGCGAGAAGCACATGCACCGCGGCAAGAACCGTTCAAGAAAGCCTGTGGAAATGTCCTTGGCCACGCCCCGCCGCCGCCTTCCTCCTCGGCCTCCTCCTCCTCCTCCAACGTCCACTCCGACGTCACCACCGACAGGGACACCAGCACCACCAACACCACGGCAGCGCCGGCGGCCACGGCCAGTGGCAGTTCAAGCAGCTCGGCGGCTGGAGCCGAAGCAGCACAACCCCACGTCGCTCTTCCCCGGGTGCGGCGGCTACGGTAACAACGCAGCGTCGCCATCGACCTGTCCGGCAAAGAACAGGCCGAGGAGAAGGAGAGGCGGCAGCAGCAGCAGCACTGCTTCTGCTGGGCGCTGACCTGAGGCTCGACAAGCCGTCGTCGGGGCACGGCGAC | |||||||||
gi|217047385|gb|GH213244.1|GH213244 HVSMEb0012N18f2 Hordeum vulgare seedling shoot (dehydration stress) cDNA library HVSMEb (HVc TCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CAGATCAGGCGGAGCGTCACCTCGCTCTACCCGTCCGCCTACTTTGGCTCCTCCACATTGGGGTGGGGGCCTTTCCAGCTGGGCTACTCCGGGAACGCGGACCTGGAGCCCGGGCGGTGCCGCCGGACGGACGGCAAGAAGTGGCGGTGCTCCAGGGACGCCGTCGCCGACCAGAAGTACTGCGAGCGGCATATGAACCGGGGACGCCATCGTTCAAGAAAGCATGTGGAAGGCCAGCCTGGCCATGCCGCGAAAGCGATGCCTGCCACGGTGGCGGCTGCTGCACAACCCGGTGCTCTCGCCGCACGTGGCTG | |||||||||
gi|24327540|gb|CA031383.1|CA031383 HX09M20r HX Hordeum vulgare subsp. vulgare cDNA clone HX09M20 5-PRIME, mRNA sequence TCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CGGACGAGGCTCGAGCTTAAGCCCAGCACGATCTGCCTCGCCGAGTCAGTGTGAGCGAGCTCTTGCCGTAGTAGTAGTAACACTCGCGCTGCGCTGTGGTTGGTGCGGCCGGAGCCCGGAGAGACAGAGAGAGATAGAGATGATGCTGGGAGGGCAAGGCGGCGGCGGGAGGTGCCTGTTCACGGCGTCGCAGTGGCGGGAGCTGGAGCACCAGGCGCTCATCTACAAGTACATGGCCGCCGGCTCGCAGGTGCCCCACGAGCTGGTCGTCCCGCTCCGCCACCGCGACGCCGCCTTCGCCTCCATCGACACCGCCCCCTCCCTCGCCTGCTTCCCTCCACCGCAGCCATCCCTGGGGTGGGGGCTCTACGGGACCGGGGCGCAGTACGCGCGGAAGCCGGAGGACCCGGAGCCTGGGCGGTGCCGGCGGACGGACGGCAAGAAGTGGCGGTGCTCCAGGGAGGCGTACGGGGAGTCCAAGTACTGCGACAGGCACATGCACCGCGGCAAGAACCGTTCAAGAAAGCCTGTGGAACCAATGTCCTCCTCCTCCTCCTCCGTCTCCTCCCCGGCGGCCTCCTACCGCCAGACCACCCTCTCCATGTCGCCCCCCACGCCGGCCGACGCGCCCAG | |||||||||
gi|21181671|gb|AJ465715.1|AJ465715 AJ465715 S00007 Hordeum vulgare cDNA clone S0000700052G12F2, mRNA sequence TCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TTTACCCCAACTCAGTGGATGGAGCTTGAGCACCAGGCCCTTATCTACAAGCACATAGCTGCAAAGGCCCCTGTGCCATCCAGTTGGCTCCTCCCCATCAGGAGGAGCCTCAATCCATGGGCAGGATGGGCACCATTTCGTTCCAGCGGTGCTGATGGGGAACCCCGAAGATGTCTCCGCACAGACGGCAAGAAGTGGCGGTGCTCCAAAGATTCTGTTGGGGACCAAAAGTACTGTGAGCGACACATAAACCATGGTCGCCAACGTTCAAGAAAGCATGTGGAAGGCCGAAAGAGACAACCACCGTTGCCGAACAAACCATGGCTGTTTCTGGTGGTTTTTCATCACACTGCCAGGCCGTGGCTTGGCAGCAGCAGGTGAAAAGCTTAGCTGCTAATGTGACTGATCCTTTCCCAAGAC | |||||||||
gi|30055699|gb|CB861140.1|CB861140 HH02A24w HH Hordeum vulgare cDNA clone HH02A24 5-PRIME, mRNA sequence TCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CACGCGTCCGGGAGGCGGCGCATCAGCATCCTCATCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGGATGAGCGGCGCGCGGTGGGCGGCGAGGCCGGCGCCCTTCACGGCGGCGCAGTACGAGGAGCTGGAGCACAGGCGCTCATCTACAAGTACCTCGTCGCCGGCGTCCCCGTCCCGCAGGACCTCCTCCTCCCCATCCGCGCGGCTTCGAGACCCTCGCCTCGCGCTTCTACCACCACCACGCCCTTGGGTACGGGTCCTACTTCGGGAGAAGCTGGATCCGGAGCCGGGGCGGTGCCGGCGGACGGACGGCAAGAAGTGGCGGTGCTCCAAGGAGGCGCTCAGGACTCCAAGTACTGCGAGCGCCACATGCACCGCGGCCGCAACCGTTCAAGAAAGCCTGTGGAACGCAGCTCGTCGCCAGCTCCCACTCCCAGTCCCAGCAGCACGCCACCGCCGCCTTCCACAACCACTCGCGTATCCGGCGATCGCCACTGGCGGTGGCTCCTTCGCCCTGGGGTCTGCTCAGCTGCACATGGACACTGCGCGCCTTACGCGACGACCGCCGGTGCTGCCGGAAACAAAGATTTCAGGTATTCTGCCTATGGAGTGAGGCGTCGGCGATCGAGGAGCACAACCAGTTCATCACC | |||||||||
gi|24303815|gb|CA026441.1|CA026441 HZ55O21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55O21 5-PRIME, mRNA sequence TCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCGTGAATTGTTCCTGCGCAAGAAGGTGGATCCAAAACCGGTGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCGACAAGGAGGCCTTCTCCGACTCCAAGCATTGCGAGAACCACATGCACCGCGGCCGCAACCGTTCAAGAAAGCCTGTGGAAACGCANCTGGTNCCCCACTCCCAGCCGCCGCCGGCCGCCTCCGCCGTGCCGCCCCTCGCCACCGGCTGCCAGAGCCACTCTCTCTACCCCGCCATCGGTGGTGGTGGAGGC | |||||||||
gi|13263879|gb|BE213945.2|BE213945 HV_CEb0001L13f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenge TCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CGTCAGCCGCCGCGTGTGGTCGCCGGCCCGCCGCCGCCACGGCAACGTACGCCTTCTCCCCCCCACAACAACCCCTTCCATCGTCAATTCCCGGCACCACCTACCTCTATCTCACCCCCCGCCCCCTTCATTCCCAAGGCCAAGGAGCGATGGCGGTGGTCGGCGTTCTGGCGCTGCAGGGCTCCTACAACGAGCACATGTCCGCGCTGAGGAGGATCGGGGTGAAGGGGGTGGAGGTGCGCAAGCCGGAGCAGCTGCAGGGCATCGACTCGCTCATCATCCCCGGCGGCGAGAGCACCACCATGGCCAAGCTCGCCAACTACCACAACCTGTTTCCTGCACTTCGAGAATTTGTCGGTGCAGGAAAGCCTGTGTGGGGAACTTGTGCTGGGCTCATTTTCCTTGCAAACAAGGCGGTAGGGCAAAAATCGGGAGGTCAGGAGCTTGTTGGGGGGCTAGATTGCACCGTCCACCGGAACTTTTTTGGGAGCCAGCTGCAAAGCTTTGAAACCGAACTTTCAGTGCCAATGCTTGCGGAGAAGGAAGGAGGCAGTAATACATGCCGTGGAGTATTATACGAGCACCTGCTATCTTGGAGTAGGATCGGATGTGGAATACTGGCTGACTGCCCTGTTCCTTCTGGGAAACCCAGCTTACCATACCATCTTCCGTGGGGGTAGAGGAAGAGCGGTACTCAAAAATCGGTATTGGTGCGAACAGAAGGGGATATCTTCGCACCGCTTTGACCCAAATTGACGATGACTGGAGATGGCGTCGTGTTGTTGGATGGACAAAGATCCATCAAAGCCTGCGTCGCGTATTTTTCAAGGGTAGAAAATCGGAGGCGGCGAGACAACTTGGTCTCCCTTGGAACCCCAACGCCGGGCGCCACTTAGAAAGAGACTACGTTGACCCGGGGACGAGGGTCGTTCTGAAAGTGAAAACAGGCTGCACCCCTGTTGGAGAG | |||||||||
gi|24324914|gb|CA029723.1|CA029723 HX05A15r HX Hordeum vulgare subsp. vulgare cDNA clone HX05A15 5-PRIME, mRNA sequence TCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CGGCACGAGGAGCCGCAGCCGCAGCAGAGGAGAGAGAGAGGGAGGGAGAAGCATATATGGCGATGCCCTTTGCCTCCCTGTCGCCGGCAGCCGACCACCACCGCTCCTCCCCCATCTTCCCCTTCTGCCGCTCCTCCCCTCTCTACTCGGTAGGGGAGGAGGCGGCGCATCAGCATCCTCATCCTCAGCAGCAGCAGCAGCAGCACGCGATGAGCGGCGCGCGGTGGGCGGCGAGGCCGGCGCCCTTCACGGCGGCGCAGTACGAGGAGCTGGAGCAGCAGGCGCTCATCTACAAGTACCTCGTCGCCGGCGTCCCCGTCCCGCAGGACCTCCTCCTCCCCATCCGCCGCGGCTTCGAGACCCTCGCCTCGCGCTTCTACCACCACCACGCCCTTGGGTACGGGTCCTACTTCGGGAAGAAGCTGGATCCGGAGCCGGGGCGGTGCCGGCGGACGGACGGCAAGAAGTGGCGGTGCTCCAAGGAGGCCGCTCAGGACTCCAAGTACTGCGAGCGCCACATGCACCGCGGCCGCAACCGTTCAAGAAAGCCTGTGGAAACGCAGCTCGTCGCCAGCTCCCACTCCCAGTCCCAGCAGCACGCCACCGCCGCCTTCCACAACCACTCGCCGTATCCGGCGAT | |||||||||
gi|161471752|gb|EX583134.1|EX583134 HDP09M03w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP09M03, mRNA sequence TCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCGGATTCTGACACGGAGCCTGGAAGATGCCGTCGAACCGACGGCAAAAAATGGCGGTGCTCGAAGGAGGCGATGGCCGAGCACAAGTATTGTGAGCGGCACATCAATAGGAACCGCCATCGTTCAAGAAAGCCTGTGGAAAACCAAACAAGGAAGAATGCGAAAGAGGCACCTGCTGCTGGCCCATTATCATCCGCTGTCTCACAGGGTGGCTGTAAGAAATCAAAAGCTAGTGAGGAACTGAAGCCAGGGAGTGTCAGCTATTGGACAGACAGTTTAAACAGGGCAATGGTGAGCAAAGCCAGGGGAAACAACCCTGAAGAAGGCAACAGCGCTCCACTCATAAATTCTACTAATCAACAACACACATTGTCCCTGCTCTCTCAACTGAAGCAACAGACCAAACCAGATAAGTTCAGCCCGGCAGTCGATAGTGAATCGATCTCCTCAAATACAGTATTGAAGCCTTGGGAGATAAGCAACCAGCAGAGCAGTAAGGACATTTCGTCCACGACGCCCCATGATCGCGGATGCCTTCAATCAGTCCTTCAAGATTTCAGCATGCATAAGAATGAGAAGATCGAGTCTCAGAAAAACAATGCTTCAGTGCCACCAACTTTCTATTCATCTACAGAAGGTCCACGCATCAGCTGCCTTACATCTAACATGATGCAAGTGCAG | |||||||||
gi|16333251|gb|BG417618.2|BG417618 HVSMEk0018K14f Hordeum vulgare testa/pericarp EST library HVcDNA0013 (normal) Hordeum vulgare TCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): AAGGGGGAAAACACAGTTGAGAAAGGAACGAGCCATGGCGCAGCAGCTGCTGCTCCTCCTACCCGCGCCTTCGGGGACGTTCTCGAAGCCACTCCCTTCCCCTACCCCCTCCCTACCCCGGCGCCATGCCCCCTCCATCTCCATCACACGCCGATTAGTGGCTGTAGTCGCCGCCGCCCGCCGAGATCTGCTCCGCTGCGGAATGCGGCACTCAGATTTGGTGTCCGAGTTGGAGCTCGCCAAGGACACGAAGCATCAGGGTGGTCGTGCCAACGCCATATTCTGGATCTTGCTGCTTAATCTTGGGCTCTACGTTGCAGACCACTTTGTACAGATCCCGCAGATAAAGGCACTCTACCTGTACCATGCATTCCCTTTTTGGTATCNAGTTGTGACCATCAACGTTTTGCCATGCTAACTGGAATCACCTTTCAAGCAATCTGTTCTTTGTGTCATTTTTGGAAAGCTTGTGGAAGAGGAGGAGGGGAACTCCGCACTGTGGATGTCTTATATTTCACCGGTGCTGGAGCAAACTTGATTTCATGGTTAGTTCTCCCTACCGCGTCCGTGTCGCTAGGAGCATCTGGGGCTGTATTTGGCCTTTCACAATTAGTGTCCTAGTAAAGATGTCCTGAGACTGGAAAAAAATTCTTGAGGCCTTATCCTTGGTTCATATTGTGGTTGACAAAGTCATGG | |||||||||
gi|30070950|gb|CB868973.1|CB868973 HC09P08w CH Hordeum vulgare cDNA clone HC09P08 5-PRIME, mRNA sequence TCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CACGCGTCCGACTACTTGGATGAAAATTGAGGACACATTGTTACTTGTTGATATTTGTTACCTTTGCTTTGCATTTCAGATCCGGCAGATAAAGGCACTCTACCTGTACCATGCATTCCCTTCTTGGTATCAGTTTGTGACATCAACGTTTTGCCATGCTAACTGGAATCACCTTTCAAGCAATCTGTTCTTTGTGTACATTTTTGGAAAGCTTGTGGAAGAGGAGGAGGGTAACTTCGCACTGTGGATGTCTTATATTTTCACCGGTGCTGGAGCAAACTTGATTTCATGGTTAGTTCTCCCTACGTCGTCCGTGTCGCTTGGAGCATCTGGGGCTGTTTTTGGCCTTTTCACAATTAGTGTACTAGTAAAGATGTCCTGGGACTGGAGAAAGATTCTTGAGGTCCTTATCCTTGGTCAATTTGTTGTTGACAAGGTCATGGAAGCTGCACGTGCAACCACCGTAACAGGCACCGCTCTTCAAGTAAACAACATTGCCCATGTCTCGGGTGCTTTAATTGGTGCTGCATTAGTATTTGTGATCAACAGAATCCCCTTATCGTCTAATGATGATAGCCCAAAGGCTTCAAAGGATAGCAAGGACAAAAGAAGTTATTTAAGCT | |||||||||