| mature miRNA: TCGGACCAGGCTTCATTCCC species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|13109587|gb|BF620601.2|BF620601 HVSMEc0020F17f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstresse TCGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): GCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTAAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGGCGAAGCGGTTGAGTGCCGCACCCTAGATGGCTAAAGTCCAGTAGCCGAAAGCATCACTAGCTTATGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAAGGTGAAAAGAACCCCCAGTGGGTAGTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGATCTCTGACCGCGTGCCTGTTGAAGATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAAACGGACCCACCGGAGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATTGTCACTGCTTATGGACCCGAACCCTGGTTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCAGAAGTCCGAACCGACTGATGTTGAAGATCCAACGGATGAGTTGGGTTAGGGGTGGAATGGCACTTCAACCCAGAGCTAGCTGGGTCTTCCCGAAATGCGTTAAGCCGCAAAGTTGACTGGGCATCTAGGGGTGAAGCCTGGTTCGGGGCGGGGCTGGCGAGGGGAACCAATAG | |||||||||
gi|60290163|gb|DN188402.1|DN188402 HO22J15w HO Hordeum vulgare cDNA clone HO22J15 3-PRIME, mRNA sequence TCGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): GCAGGTAACTCTCACTTGCGAATTGCGATATCTGCAGGGGCATTCCAGTGTGGGCATTTACACGACAAACGCACGAACGGAAAAGTAAAGTGTCAGGCAGGCGCGGTGGTGCTAGAGTATATCAGATCAGCCAGGAAGGCAGCCACAAGATCAAGAGCGGCACGAAGCCGCACGACAAATGCTTGCCGAAATCCCTCTCCTAAATTTCATACAGACGGCAAATGCGGCCAAAACTTGTGCTTCAGGAGCAGCACGAAGCCGCGCTGACCACTCTCTCGTTGGGTCTCTGGGAGAGAACCATCCCCGCCGCCTGTGGGTTCTGCGCCGCCTGCCCTTGCAGCAGTCTCTTCGCAATCTCATAAAATATGTCATTCACATTGGTTGCAGTCTTGGCAGACGTTTCCATGAAGAAGAGGCCATTCTCCTGCGCATATGTCTTGGCTTCCTCTATTTGAACCTCCCTCGCCTCTAGCAAATCAGCTTTGTTGCCAGCAAGAGCCACTACTGTATTCTGGTTTCCTTGAGCTTGAAGTTCTTGAACCCATTTCTTTGCTCGGGTGAAGGATGCCTGGTTCGAGATGTCATAGACAACTATGGCTGCGGCAGCACCCCTATAGTACATGGGGGCCAAGCTATGATACCTCTCCTGCCCAGCAGTATCCCAGATTTCAAACTTCACAGTCTCGTCATTAACAGCCAG | |||||||||
gi|13109627|gb|BF620652.2|BF620652 HVSMEc0020H21f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstresse TCGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): CAGCCCCTGATCCCGCTCCCAATGGCGTCCACCGCCGCGCCGCCCGCCGCCCTCGTCGCCCGCCGCGCCGCGGCCGCCGCGGCCGCGCCGCTGCGGCGCGCGGGGCTCGCGGCCGGGTGCCAGCCGGCGCGCTCGCTGGCGTTCGCGGCCGGCGCCGACCCGCGCCTCGCAGTCCACGTCGCGTCGCGCTGCCGGGCCGCCTCGGCCGCGCGCGGGGCCCGCGCCGTCGCCACCATGGCCAATAAGAGCGTCGGCGACCTCACCGCCGCCGACCTCGAGGGCAAGCGCGTGCTCGTGCGGGCCGACCTCAACGTGCCGCTCGACGACAACCAGAACATCACCGACGACACCCGCATCCGCGCCGCCATCCCCACCATGAAGTACCTCCTCACCAACGGCGCCAAGGTCATCCTCACCAGCCACTTGCGTCGTCCTAAGGGTGCTACTCCTAATTTTAGCTTGGCTCCCCTTGTGCCCAGATTGTCCGAGCTTCTTGGTATTGAGGTGAAAAAAGCAGATGATGTTATTGGCCCAAAAGGTGAGAGGTGGTGGCTGACCTGGCAAATGGTGCTGTTTTGCTCCTCCAAATGTAGCATTTACAAGGAAGAGGAGAAGACGATCCCCAGTTTGGAAAGAAGCTTGGTTCGGTGGCATATCTGTCTGTAAGCGAGCATGTCGAACGCCCTCAGAGCGCATGCTTTGACTGTGGGAGTTACCAAGTGCTAGAAGCTCGTGTGGCGGATTCTTTTACACAGGGACTTGCTGCCTTGTGGGGATGGTTTAACCTAACGCCCTTGGCGCCTGGGGGGTGGCTCAGGGGCCTCCAGCN | |||||||||
gi|60291564|gb|DN189803.1|DN189803 HO16L09w HO Hordeum vulgare cDNA clone HO16L09 3-PRIME, mRNA sequence TCGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): CGCTTACTGCGCCACAATGGTCGATTGATAAGGAATTCTAGTACCTTTCAAAATGTACTAGTGTGGCTCAGTATTGCCTTCTCATGTATGGGTTCTATGGGACTCATTCTATTAAGCGTTTATGACACTATAAGTCATCCCGAATTACACGATATATTTTTAGCTTTATTCATCTCAGGATACATAATCAGCGCTTTTATGATTTGCTGCGAGTATCAACGCCTTGCTTACCAAAACCATGAATACCGAATTCTTGGCGCCTCTTTTTGGCTGAAGTTAGCATTTACGGTAATAGAACTATTTGTGGCAATTGCTTTTGCCTATGTCAGTCGGATAAAAAATTTTAACGAGGCAGCCATCATTGAATGGACACTCGCCTTCATATTTACTCTTTACGTTTATTCATTTTTCTTAGACCTTGTTCCGGCTGTCCGACGAGGTTCTAGAATCGCATGTGGAAGAGGCGTACATGGTGAAGTAGTTGGAATACGGATCGCTAATCGTCCGGGAGTTAATGCGCTAAAGATTAGACTTCAGGAGAATCTAGCACGTGATGATCAGGCTGAGACAGGGACGTTATAAGCTGTCGGGAGTGACGCCTGGTACGACGAAATAGTCATGGAATTGACGAATGGCAGAGTGGCTTGCTGGTTATGGTACATGGTTTTGTGACTAAGCTGTAACTTCAAATTAATTAGAC | |||||||||
gi|21164261|gb|BJ485819.1|BJ485819 BJ485819 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TCGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): TTCACTGATTACTCAACACCAGGAATGTTCATCGATAGCTCGACACTACCCAGGCTGCCTCAAGGAAGGTACATTGATAGCTTGCCACAGTCGAGGCTACCACAAGGAAGGTACATGGATAACTCACCACCGGCCCAGCTTCCACAGAGAAGGTTGGCTGATAACAATCCAGAGCAGTGGCACCAAAGGAGCAATAATCATAACCAGCTAATGGATATGGAGCCTGGGCCGATGGTATCTGGTAGCCTTGGCCTTGGCCTGGCCTATGAAGGTTCAAATCCAAGGTTGCCAGATTTGATGATGGGGCAATCACCACTGTTCGGTCCCAAGCCTGCCACTCTGGACTTCCTTGGGCTTGGCATCGGAGGGACCATGGGCGGCGGCTCCACGGCGGCCAACGGTGGTGGCCTACCGGCATTGATGGTGGGTGGAGAGCTGGACATGGGGTCTGCCGCACAGGCGCCCTCTCCATGGGAGGAGGCACAGAGAAAGACCAACGGCCGCACGATCCTGTGAGAGGTTCTCTTTTTTGTAACCTTAGCGGGCTTTTGTGCTTTGGCTCATCCATTCTTTCAGCTGCTGTGTTGGGTGGTGGTAGGAAAAGCTAGAACCGTGTAAGCTGCAGAACCTGTATATAGATCTTCCCTCTCCCCCCTCCCTCCCTCCTCTCCTGTCTAAATTAAAAGCTATTACTATAGAGCGAATT | |||||||||
gi|21964686|gb|BQ756214.1|BQ756214 EBem06_SQ001_L02_R embryo, 21 DPA, no treatment, cv Optic, EBem06 Hordeum vulgare subsp. vulg TCGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): GATTCAAGAAACAATCCAACGCAGTACAGCCCGAGGAGATCGATCGATCTCTAGATCATCCGGCACGAATGGCGGGCATGGTGTTCAGGTTGGAGAACCCGATGATGACGGCGCTGCAGCACCTGCTGGACTTCCCGGATGGCTAGGCCGGCGGACCAAGCGACACCGGCGGGGAGAAGCATGGTCCGACACGCACGTACGTACGCGACGCGCGCGCCATGGCGGCCACACCGGACGACGTGAAAGAGCTGTCGGGCGCGTACTCGTTCTTGGTGGACATGCCCGGGCTCGGG | |||||||||
gi|166076098|gb|FD526524.1|FD526524 RUS105E03w HZ Hordeum vulgare subsp. vulgare cDNA clone HZ58J21, mRNA sequence TCGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): GCGAATTGCGATATCTGCAGGGGCATTCCAGTGTGGGCATTTACACGACAAACGCACGAACGGAAAAGTAAAGTGTCAGGCAGGCGCGGTGGTGCTAGAGTATATCAGATCAGCCAGGAAGGCAGCCACAAGATCAAGAGCGGCACGAAGCCGCACGACAAATGCTTGCCGAAATCCCTCTCCTAAATTTCATACAGACGGCAAATGCGGCCAAAACTTGTGCTTCAGGAGCAGCACGAAGCCGCGCTGACCACTCTCTCGTTGGGTCTCTGGGAGAGAACCATCCCCGCCGCCTGTGGGTTCTGCGCCGCCTGCCCTTGCAGCAGTCTCTTCGCAATCTCATAAAATATGTCATTCACATTGGTTGCAGTCTTGGCAGACGTTTCCATGAAGAAGAGGCCATTCTCCTGCGCATATGTCTTGGCTTCCTCTATTTGAACCTCCCTCGCCTCTAGCAAATCAGCTTTGTTGCCAGCAAGAGCCACTACTGTATTCTGGTTTCCTTGAGCTTGAAGTTCTTGAACCCATTTCTTTGCTCGGGTGAAGGATGCCTGGTTCGAGATGTCAT | |||||||||
gi|13254325|gb|BG365228.1|BG365228 HVSMEi0001O08f Hordeum vulgare 20 DAP spike EST library HVcDNA0010 (20 DAP) Hordeum vulgare s TCGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): GACGACGCCAGTGCCTGAGAGGGTTCAAGTTGGTGGCTCTCCATAATATATAACTGATAGGAAGTAGGGCAAAGGTGGATTTGGCCAGGTCTATGTTGGCAGAAGAATAACTGGTGGGGCTTCTCGTACAGGCCCAGATGCATACAACGTTGCACTCAGACTTGAACATCGAAGAAGCAAAGGATGTATTTATGGCCCCCCGTTTGAGTGGCATGTTTATCAGTCTCTCAATGGCTGTTATGGCGTACCATCAGTCCACTACAACGGTCGCCAGGGAGACTACTACATTCTTGTCATGGATATGCTTGGTCCTAGCCTCTGGGATGTATGGAATTCAATGGGACAGGCGATGTCTTCTCATATGGTGGCTTGCATTGCCGTGGCAACCATATCAATCCTTGAGAAGCTTGATTCCAAAGGCTGAAGGCATGGAGATGCGACAGCCCGAAACTTACTGCTTAGCCGACCTGAATCACCTGAAGACAACAAGCTTTACCTTATTGATCTGCGCATAAACCTCCACTGGAAAAGAGCCTGGTCCGAGCCGGCTGTAACATTTGACCCAAGGGCAAGACCCTAGTGGGGAACATGGGGATGACCTGGGGGCCTACTCATAGTGTCCCAACCTGCGCAGAGAAGGTTGACAGAAAACCCCTGGGCCACCCGCGGGTGAGTAACCTAGAGAGGCGTACCCTGAACCGAATTTTGGGTTCCCCGGGCGCGAGCGCTGAGATGGAACAGGGAGACTGCCCTAGTGAGGAGATTGAGGCAAGAGGGCCCCCCCACGTCGACCATATGTTAAGGTGTCCCCTGATTTGATTGAGGAGGGTGCCCTTGGACCCGGACGCCGAGGTAGGGGG | |||||||||
gi|19152418|gb|BM816404.1|BM816404 HC02D09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone HC02D09_T3.ab1 similar to DNA-(ap TCGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): GCTCCCTCCTCGCCTCGCGCAAGGACGCCTTCATCCCGGCCTTCCGCTCCCACTTCTCCTCGCTGCTCGCCACCGTCGAGTCGCAGCTCCTTCTCAGCGGCAAGTCCAACTTCAACACGCTCAACGACGCCACCTCCTTCGAGTTCATCGGCGACGCCTACTTCGGCGTGCTCCCCTCCGCCTCAGACCTCGGCACCACCGGCCCGGCCAAGGCCGCCAAGTGGCTCATATTCCAGCTCCACCCGCTCGTCACGCTCGGCCTCCCCATGATCCTCGAGGAGCCGCTCCTCCACACCGTGCACCTCCCGCCCTTCCTCGTCAGCGGCGACTACAAGGCGCTGTACAAGTACTTCTTCGCCGCCGCGACCAAGGCGCTCGACACCGCCGAGGGCCTCGGGCTGAAGCGGGACGAGGCGTGCCACAACCTGCTGTTCGCCACCGTCTTCAACAGCTACGGCGGCCTCAAGGTGCTGCTCCCGGGGATCCTCGCGCGCATCGCCGACTCCGGAGAGAAGTTCCACAAGAAGCTCGTCACGGAGATACGCGCCGCCGTGGCGGAGGCCGGGCGGCAGGTGACGATAGAGGCGCTGGAGAGATGGAGCTGACCAAGTCGGGCGTGGGGGGAGGCGCTGCGNTTTGGACCCGCCCCGTAAGGTTCCAGTACGGGCCGCGCCAAGGCGGGCATGAAACAATCGAGAGCCACCCACGCGGTTGTTTCGCCGGGGAAAAAAGGGGGGATAAGCCTGGTTCGGGGTACCAACCCGGGTGGCCAAAAAG | |||||||||