| mature miRNA: TCGGACCAGGCTTCATTCCCC species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|60291564|gb|DN189803.1|DN189803 HO16L09w HO Hordeum vulgare cDNA clone HO16L09 3-PRIME, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): CGCTTACTGCGCCACAATGGTCGATTGATAAGGAATTCTAGTACCTTTCAAAATGTACTAGTGTGGCTCAGTATTGCCTTCTCATGTATGGGTTCTATGGGACTCATTCTATTAAGCGTTTATGACACTATAAGTCATCCCGAATTACACGATATATTTTTAGCTTTATTCATCTCAGGATACATAATCAGCGCTTTTATGATTTGCTGCGAGTATCAACGCCTTGCTTACCAAAACCATGAATACCGAATTCTTGGCGCCTCTTTTTGGCTGAAGTTAGCATTTACGGTAATAGAACTATTTGTGGCAATTGCTTTTGCCTATGTCAGTCGGATAAAAAATTTTAACGAGGCAGCCATCATTGAATGGACACTCGCCTTCATATTTACTCTTTACGTTTATTCATTTTTCTTAGACCTTGTTCCGGCTGTCCGACGAGGTTCTAGAATCGCATGTGGAAGAGGCGTACATGGTGAAGTAGTTGGAATACGGATCGCTAATCGTCCGGGAGTTAATGCGCTAAAGATTAGACTTCAGGAGAATCTAGCACGTGATGATCAGGCTGAGACAGGGACGTTATAAGCTGTCGGGAGTGACGCCTGGTACGACGAAATAGTCATGGAATTGACGAATGGCAGAGTGGCTTGCTGGTTATGGTACATGGTTTTGTGACTAAGCTGTAACTTCAAATTAATTAGAC | |||||||||
gi|60290163|gb|DN188402.1|DN188402 HO22J15w HO Hordeum vulgare cDNA clone HO22J15 3-PRIME, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GCAGGTAACTCTCACTTGCGAATTGCGATATCTGCAGGGGCATTCCAGTGTGGGCATTTACACGACAAACGCACGAACGGAAAAGTAAAGTGTCAGGCAGGCGCGGTGGTGCTAGAGTATATCAGATCAGCCAGGAAGGCAGCCACAAGATCAAGAGCGGCACGAAGCCGCACGACAAATGCTTGCCGAAATCCCTCTCCTAAATTTCATACAGACGGCAAATGCGGCCAAAACTTGTGCTTCAGGAGCAGCACGAAGCCGCGCTGACCACTCTCTCGTTGGGTCTCTGGGAGAGAACCATCCCCGCCGCCTGTGGGTTCTGCGCCGCCTGCCCTTGCAGCAGTCTCTTCGCAATCTCATAAAATATGTCATTCACATTGGTTGCAGTCTTGGCAGACGTTTCCATGAAGAAGAGGCCATTCTCCTGCGCATATGTCTTGGCTTCCTCTATTTGAACCTCCCTCGCCTCTAGCAAATCAGCTTTGTTGCCAGCAAGAGCCACTACTGTATTCTGGTTTCCTTGAGCTTGAAGTTCTTGAACCCATTTCTTTGCTCGGGTGAAGGATGCCTGGTTCGAGATGTCATAGACAACTATGGCTGCGGCAGCACCCCTATAGTACATGGGGGCCAAGCTATGATACCTCTCCTGCCCAGCAGTATCCCAGATTTCAAACTTCACAGTCTCGTCATTAACAGCCAG | |||||||||
gi|19152418|gb|BM816404.1|BM816404 HC02D09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone HC02D09_T3.ab1 similar to DNA-(ap TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GCTCCCTCCTCGCCTCGCGCAAGGACGCCTTCATCCCGGCCTTCCGCTCCCACTTCTCCTCGCTGCTCGCCACCGTCGAGTCGCAGCTCCTTCTCAGCGGCAAGTCCAACTTCAACACGCTCAACGACGCCACCTCCTTCGAGTTCATCGGCGACGCCTACTTCGGCGTGCTCCCCTCCGCCTCAGACCTCGGCACCACCGGCCCGGCCAAGGCCGCCAAGTGGCTCATATTCCAGCTCCACCCGCTCGTCACGCTCGGCCTCCCCATGATCCTCGAGGAGCCGCTCCTCCACACCGTGCACCTCCCGCCCTTCCTCGTCAGCGGCGACTACAAGGCGCTGTACAAGTACTTCTTCGCCGCCGCGACCAAGGCGCTCGACACCGCCGAGGGCCTCGGGCTGAAGCGGGACGAGGCGTGCCACAACCTGCTGTTCGCCACCGTCTTCAACAGCTACGGCGGCCTCAAGGTGCTGCTCCCGGGGATCCTCGCGCGCATCGCCGACTCCGGAGAGAAGTTCCACAAGAAGCTCGTCACGGAGATACGCGCCGCCGTGGCGGAGGCCGGGCGGCAGGTGACGATAGAGGCGCTGGAGAGATGGAGCTGACCAAGTCGGGCGTGGGGGGAGGCGCTGCGNTTTGGACCCGCCCCGTAAGGTTCCAGTACGGGCCGCGCCAAGGCGGGCATGAAACAATCGAGAGCCACCCACGCGGTTGTTTCGCCGGGGAAAAAAGGGGGGATAAGCCTGGTTCGGGGTACCAACCCGGGTGGCCAAAAAG | |||||||||
gi|166076098|gb|FD526524.1|FD526524 RUS105E03w HZ Hordeum vulgare subsp. vulgare cDNA clone HZ58J21, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GCGAATTGCGATATCTGCAGGGGCATTCCAGTGTGGGCATTTACACGACAAACGCACGAACGGAAAAGTAAAGTGTCAGGCAGGCGCGGTGGTGCTAGAGTATATCAGATCAGCCAGGAAGGCAGCCACAAGATCAAGAGCGGCACGAAGCCGCACGACAAATGCTTGCCGAAATCCCTCTCCTAAATTTCATACAGACGGCAAATGCGGCCAAAACTTGTGCTTCAGGAGCAGCACGAAGCCGCGCTGACCACTCTCTCGTTGGGTCTCTGGGAGAGAACCATCCCCGCCGCCTGTGGGTTCTGCGCCGCCTGCCCTTGCAGCAGTCTCTTCGCAATCTCATAAAATATGTCATTCACATTGGTTGCAGTCTTGGCAGACGTTTCCATGAAGAAGAGGCCATTCTCCTGCGCATATGTCTTGGCTTCCTCTATTTGAACCTCCCTCGCCTCTAGCAAATCAGCTTTGTTGCCAGCAAGAGCCACTACTGTATTCTGGTTTCCTTGAGCTTGAAGTTCTTGAACCCATTTCTTTGCTCGGGTGAAGGATGCCTGGTTCGAGATGTCAT | |||||||||