| mature miRNA: TGACCTTTAGTCCCGGTTGAT species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|16313947|gb|BF618436.3|BF618436 HVSMEc0005L01f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstresse TGACCTTTAGTCCCGGTTGAT EST sequence (targeted fragment marked with yellow): CATGTGGAGGCCCATCTGTCTCGGTTCGTGTAAGAACCGGGACTAAAGGCCAAGGGCATTAGTAACGACCTTTTAATCCGATTTCCGAAACCGCCACAGAAGGCCCTTATGAACCGGGACAAAAGGCCCTTTTTCTACTAGTGTATGGTCCTCAAAAATCTGGGACTCTCGGTTCAACCTTATTTTTTACATGAGATATGGGTCCATTAATGTACATGCGCATTATCTTATGTAGTGAGATATATAGGATTTAGTGCATAATTCCAAATTGGGATATACTATGGTAGATATTAAATGTAGTGATATACTCTACGTATGTGCAGGGTGTGTACAGATTCAGGTGCAATATTAAATAACGTAATTTCCAGAAATTTGTAGTTGATGTACTCCTAAAAGCATATAAGTCCTCGTGGATGAATGGCACTTATGTGGGTCAAGCACGTGCCCAGGTATGGGGACAGAGCAAAGCGGTCCAAATATGTAGGGGGAACGCATGAGGACGGAGAGCGGCGAACGGTAGGGAAGACCGGGGAAACGGCAGAGCTGTAGAAAACGAAAGTGGATATAGCTAGACGAAGCAGAGAGGGGAAACACGCGCGGCGATAGACATGTAGGGGGCACGTAGCGAGTTCAACTGAGGGAGTGAAGGGAGTGAGGCGGTTGCTGAAGAAAACACGGGGAGGTGAGGAGCAAGCGGGGAGGAAACAGTGATAAGAGGCGTGAAAATGCACGAAGGGATGCGACGCGCGCGGAGAACATGAAGAGAGGGCGAAGATATAAGATGACTGAGCAGAGAGACGGAACGGAGAGGAAAACAGACAATGATGGGAGGGACAATATGCCAAAACCTCAAGGGCG | |||||||||
gi|166072613|gb|FD522424.1|FD522424 RUS56A04w HF Hordeum vulgare subsp. vulgare cDNA clone HF02P09, mRNA sequence TGACCTTTAGTCCCGGTTGAT EST sequence (targeted fragment marked with yellow): AAACCATTCAAATTTAAAAAATAATTGCACAAACAGAAACTAGACAAAATTTTGAATCTAATGCAAAAAAGAATCACTCAAAAAAATTAAATATCCTAAAAGATATAAGCAATTTAAAACAGAAACTACAAACAGAAATAAAATTTAAAAACAGGAAAAAATAAAAATACAAAACCCCTTTAGTCCCGGTTCGTGGTCCCGGTTCAAAACACGAACCAGGACTAAAGCCTCCAAACCATTTAGTTCCGGTTCCAGACACGAACCGGGACTAAAGGTCCCTCTTGAACCGGGACTAATGACCGACCGGCACCCTTGCCGTTCGAACCGGGACTAATGCTAACATTAGTCTCGGTTCGTAATGAAACCGAAACTAATGTGTAAATTGAGCTGGGACGGAAGCCCCTTTTTCTACTAGTGGCACTTCTACAAACACGTGGCTGTGGACCACATGTCATCCTCACACTAGAAATCAGGAAACAAGTACTAACTGCAGACACCGGACATTTGTCGTACAAAATACTTCCTTTGTACCTGAATAATTGCAGTTG | |||||||||
gi|24275077|gb|BU998094.1|BU998094 HI09P17r HI Hordeum vulgare subsp. vulgare cDNA clone HI09P17 5-PRIME, mRNA sequence TGACCTTTAGTCCCGGTTGAT EST sequence (targeted fragment marked with yellow): GTTTCAAAAGTCCCGGGACTTTTTTTAGTCCCAACTTAAAAGTCCTAGTCCCTATCCGTTTGTTTCCAGGGACTAAACAGGGACTAGAGGTCATTAAATGACATGTAAAAAGACCATGTTACCCCTGACCATATTATTAAATAACACTTGTTCATAAGCAAATATTACAAAAGCAAAGAACTCTTNTTCACAACACTTGTTCATAATGAAAGATTACAGAAGCAAACAACACTTGTTCATAACACTTGTTCATAAGCAAATATTACAGAATCGAACAACACTTGTTCATAACAACCGAAGTAATATGGGCTTGCAGAGATGGAAAAGCCCCGTCCTGCGACACCTCGAATGGCAGTTGATGAGGCACCACGGGCTCGACCAACACCACGTCCAGTGCCCTGGAACAAGGGCCTCCCACGCCCTCTGACGCCTCCGCCAACGAAAGCTGCGGCAGGGGCGACGAATGG | |||||||||
gi|24235399|gb|BU984453.1|BU984453 HF03P12r HF Hordeum vulgare subsp. vulgare cDNA clone HF03P12 5-PRIME, mRNA sequence TGACCTTTAGTCCCGGTTGAT EST sequence (targeted fragment marked with yellow): CTAAATGTTAGGCCTTTAGTCCCGCCCCTTTAGTCCTGGTTGGTGAACCGGGACTAAAGGCCCTTACGGGCCGGGGCTAAAGGCCCCGTCCCCACTAGTGTGTACAAACTGGATTATCTCTTTCGAAGTATGAGGGTTCCGGACGAATACTCATGTCTTACAAAGCCATTTCATTTTTTAATCTTATTTCAACTCTAGACTTTTTGTGCTCTGAATATGCATCATTCAAAGACACTTCATAAATTTTCAACCCTTTCTCACCTCATTTGCTATTCCTCATGCATTAAATGATTTTTTTTGAGCTAAATGACCCTAAAATTGAAAAACGCTACAAATGAACTCAGACAAGGCTGAAAAATGGCATGGCATCATCATTTCACCCACATGTCATGTGCTAAAAAGTTGGAAGTGTTACGACAAAAACAGGATGCACTTCGTGTACAAACTCGACTATTTCTTTTGAAGTATCACATTTCCGGACAAATACTCATCTCTTACAAAGATATTTTATTTTTTGAATAACCTAAAAATTACCAAATTTAATATAATGATAAAACAGACTAATATT | |||||||||