| mature miRNA: TGATTGAGCCGTGCCAATAT species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|94341108|gb|BY837148.1|BY837148 BY837148 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet117c05 5', mR TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): ACTCGGCTCACTCTCCCACGAGCGCTCGTTTACCCTAGCTCCAACGCCAGCCCGCACCTCCGCTTCCCTTTGTTCGACGATGGCGTCCACACCGCCGCCTGTAATCAGCAAGGCGGGAAACCTCACTGTCTTCATCACGCCCCCGGCCACGCCGCCGCCGGTGGATACCCCGACCTCTCGTTCGGCCGAGTCGCCACGATCTGAGTTTTCCACCCCTAATTCCACTCCTCGTTCGATGGCGTCTCCCGCGTCCCCGCCGCCAGAGCATACAGCCACATCGCCTCCGCCGCCCAAGACGGTCTCGCCGCCTCCGCCGGTCAAGACGGTCTCCCCGCCACTGCCGCCGGCCAAGCTGTTCCAGGCCTCGCCAGTGCAGGTGCCTCCGCCGCAGTTCGAGAAGGCAGAGGCTAGGACGGATGGATCGGCGTTTGGCTTCTTCTGGGACGCGGTTTTGCGCGTGCAAGAAGCGCACGCAGCTTGATGAGTACATTTCGAATTGGTTCGGCTCGATCATC | |||||||||
gi|21268784|gb|BQ461013.1|BQ461013 HE01H10r HE Hordeum vulgare subsp. vulgare cDNA clone HE01H10 5-PRIME, mRNA sequence TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): CGGCACGAGGCTCCGTTCCAGATGACCTCTACCTCACCCGAAACCACCTAGGACCGTCGGCGGCGGCAACCTTTCCCCTGCTACACGGTGCGCTTCCGTTCCAGCTCCAGCCTTCCTCGCCACCGCTTCGCGGGGCGATGAAGACGACGGCTGCCGAGGCAGCGCATCAGCAGCTGCTGGACGAGCTGGCTGCGGCGGCAAAGGCAGCCGAGGCCGGTAATTCCACTGGCGCGCGTGAGATATTGGCGCGGCTCAATCACCAGCTTCCCCCCCTTGGGAAGCCCTTCCTCCGGTCGGCCTCCTACCTCAGGGAGGCCCTCCTCCTCGCGCTCGCTGATGGACACCACGGCGCCCCCCGCATCACCTCACCGCTCGACGTCGCCCTCAAGCTGGCGGCTTACAAGTCCTTCTCCGACCTGTCGCCCATGCTGCAGTTCGCTAACTTC | |||||||||
gi|24235121|gb|BU984175.1|BU984175 HF03D09r HF Hordeum vulgare subsp. vulgare cDNA clone HF03D09 5-PRIME, mRNA sequence TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): GGTTGAATTCAACGACAAGGAGAAGCTGTTCAATCTCAAAGGCATTGCTTTGGGCAATCCTGTTCTCGAATTCTCGACTGACTTCAACTCGAGAGCCGAGTTCTTCTGGTCACATGGGCTGATATCGGATTCAACTTACAACGTCTTCACGACGGTTTGCAACTATTCACGGTATGTGAGCGAGTATTACCACGGCTCCATCAGCTCGGTTTGCGACAGGGTGATGAGCCAAGTGACCAGAGAAACTAGCAGATTTGTCGATAAGTACGATGTCACCCTGGACGTCTGCATTTCCTCAGTTTTGATGCAGTCCCAAATCCTCACCCCACACTCAAAGTCTACGGATCAAGTGAACACGGAGCTCGACGTGTGCGTCGAGGATGAGACAATGAACTACCTCAACCGAAAAGATGTGCAAAAGGCAATGCACGCTCAGCTCAACGGCGTGCCCAAGTGGACGGTCTGCAGCAGTGTTCTTGAATACAAACAGCTGGACCTACAGATCCCGACCATCAACATCGTCGGCGCACTTGTCAAGTCCGGCATTCC | |||||||||
gi|16312301|gb|BE231105.2|BE231105 HVSMEg0016L05f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow ant TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): TCCAAATTCTTGTATCTATTGTAGTCTCTGTAATATCTTGCGGGTGGCCTTGTTGCCAGAACAGTCATTTTGTCACGGATCAATCATAAAACCCCAGCCCCTTGTTCGAATGAGGGTGGTGCAGCATCATTTTTCTTTAGATGTGGATTACACGAAGGGTAGGAATTTTTTTGTGGACGTTTGGCAACAAAACTCTAGTGGCATTACCCTTATTTCGGCGTAATGCTAATAACGAGTTGTGTACTCGTGGTTGCTCTTTGGATGATGTGCATTCTGGATATAAATAAGCATGTAATAAAAGGTTATTTCCATTGTGGTTAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAC | |||||||||