| mature miRNA: TGCAGTTGCTGCCTCAAGCTT species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|13108623|gb|BF617123.2|BF617123 HVSMEc0014K18f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstresse TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): GCATCTAAATCGAGCCACCTCCGGACGACGAGAAGGCTGCCCGTTAATGTACGCTGCGCCAGCAGCTCTCCTGCCGCCGATGCATCTTACACCACGAAGGTTTCGAGGAATGCCAACATAGCCAAGCTCCAAGCAGGCTATTTGTTTCCCGAGATTGCCAGAAGAAGGGCGGCTCATCTGCTGAAGCATCCTGACGCCAAAATTATTAGTCTGGGAATAGGTGACACTACTGAGCCCATTCCGGAGGTCATAACAAATGCCATGGCAGAGAGGGCACACTCTTTATCCACAGTCTATGGCTACAGTGGTTATGGAGCCGAACAGGGTGAAAAGAAACTTAAGGCAGCAATTGCTTGCAACCTACTATGCGGATCTTGGTATCGACGAAACCGATATTATTCGACTCTGAATGGCGCCAAATGTGACATTTCTCGTCTACAGGTTCTTTTGGGATCTAAAGGGAAAATTGCAGATGAAGACCCAGTATATCCGGCATATGTTGATTAAAGTGTTATCATGGGGCAAACTGACTTATTTTAGCGAGATGTTCAAAAGTATTGCCATTTTTGAAAACCATGAAAAGGCAGTCCTTGAAAATGGATGTTTTACCTGAATCTTTCCAGAGGTCCCAAGGGACAAGAAATTCATAATTCTTGTGGGTCCACCCCAACTATTGCTCATTGATGCTGGGTGCCATCCATGGGACCATGGTTAACTACAGGTAGGGCAAAATTGAGTCAAAGGAACCAATGGGTTCCCTTAAATGAGTCTATTGATACTAGCGTTAAGGCCAAG | |||||||||
gi|30077471|gb|CB875485.1|CB875485 HX08H04w HX Hordeum vulgare subsp. vulgare cDNA clone HX08H04 3-PRIME, mRNA sequence TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): ATGAAGCTTGCACCATGCATGAGCCAGCAATTGCACTGAAGTAATATTGATTGGCTATTTTTTGGGAAATAATTGTTTTCAGACGACTACAGCATACACTTCTACTTTTGGATACTTGGATGGAGAAGTAGCAAAAAAAATAGAACTAGCGGAACGAGAACCACAAATGAGCTAACATATATAATAGTATTCTTGCGCTACGACATACAAGAAAATACCAAGACAAATGATACTAGGTCCACTAGGACAATGGAAAACTCGGAGATACAGTCGACCAGACACGCGGCAGTTGCAACAGACCATTTTGTGGCTCAAACAGTTTCTAATCGTCACCAAATGTTGTCTTCTTTCCTGCGCTAGCTGTACCAGCACTCTGCCTGCTCTGATAGCCTCGGCCACCTCCTCTACCACCATCTCGGCCACCAGATCGGCCAAACCTGCCACCGCCATCACGGCCACCTGACCGGCCAAACCTGCCGCCGCCATCACGACCACCAGATCGGCCGAACCTGCCACCGCCAGAACGGCCACCATCCCTACCACCAGATCGACCACCCCCACCACCAAATTGACCCTTAGGCTTAGCTTCAGCAACATAC | |||||||||
gi|21184739|gb|AJ468783.1|AJ468783 AJ468783 S00008 Hordeum vulgare cDNA clone S0000800148G07F1, mRNA sequence TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): GCCAGTAATGGTGGGTTCAGGAGGGATGGAAGCCAGTGGGTATCCAGGAGGGAGCTTGATAATCAGCTGCCAGAGCCTCTCCCGAGGCCGGCTCCCAAGGAAGAGGACCAGAGCTTGGTGAGGAGGAACAAGAGAATGCTGGGGAAGCTTCTTGTTGGCACGCTAGAGAAATTTCAGCAAGAGAACAAAAAACTTTCCAACTCAGAGGCTTTTATGCGTAGATCAGAGGCTCAGCAGAAGGCTGATCAAAAGGCTCGTGAGGACAGTGAAAGATTGCGGCAGCAAGTGCGGGAGCAAGCAGCTGAGAAGCGTAGGCGTGATATGACGCTTCGTGCTCGAGTAGCTGCTAAGTCAGAAGAAAAGAGGTTGGAGCTATTGTACATTCAGTGGTCTGAGCATCACAAAAAGCTGTCCAGTTTCTTAAGGACAAAAGCTGAACCAGCTATTTATTACATGCCGGCTAAACCAATAGTTGATGAT | |||||||||
gi|21962538|gb|BQ754066.1|BQ754066 EBca01_SQ002_L15_R carpel, pre-anthesis, no treatment, cv Optic, EBca01 Hordeum vulgare subsp TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): ACTCGAGATACGCATGTGGCGGCACCAAGCATGAAGCAACAACTGCAGTACTTGTGGGGAAAGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCATACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTTTGCCAAAGCTATCAGAAAAAACATAAAGTTGTGTTAGTTTCCCTAAACTGTAACACATGTTTTACAAATTGATCTACAAATGATTGGCTCACTGTTAATTTAAACCAATAATTACTTGATAACTGCATATGCACATGTTATGGAAGTAAAGCGGTAGAATACTTATGTTTTCATCTAC | |||||||||
gi|217061258|gb|GH228935.1|GH228935 HVSMEn0024P10r2 Hordeum vulgare rachis cDNA library HVSMEn (HVcDNA0015)2 Hordeum vulgare sub TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): CACCGCGTCGTCATTCCCCTCCCCGCCTTTTTTTCTATCCCCCCACTTGCGGCTTCTGGATCGGCCCCGATCCTTCCAGACACTTCCGCCCCCCCGCTATAAAAGGCCGGCGAGCGCCACCAGACCCGCCATCAGCGCTCGCTCGCACGCACCAACCCAACCCAACCCAACCCTACCCTACTCCGTTCGCGCCCGGTTGGTGGCTGGAGCCCGCGGAGGACTCGAGATACGCATGTGGCGGCACCAAGCATGAGGCAACAACTGCAGTACTTGTGGGGAAGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCATACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTTTGCCAAAGCTATCAGAAAAAAACATAAAGTTGTGTTAGTTTCCCTAAACTGTAACACATGTTTTACAAATTGATCTAGAAATGATTGGCTCACTGTTAATTTAAACCAATAATTACTCGATAACTGCATATGCACATGTTATGGAAGTAAGGCGGTAGAATACTTATGTTTTCATCTACTGGCAGGTAGCAACACGTATAGGTATATCACTCTGA | |||||||||
gi|60290268|gb|DN188507.1|DN188507 HO22G02w HO Hordeum vulgare cDNA clone HO22G02 3-PRIME, mRNA sequence TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): AGAAAAATGTCAAACAACCATTATAACTTGATCCTCTGTCACATCATGAATACAATCAAACATATCCAAACTTGGCACATTTCAATCAAACATGGTTCGCATGAGGTTTACAATCAAAACTAGTTCACATCAGGTAACACAACTAAAAAATCAAAACAATAACTAGCTCCAATGATCAAGAACTTTAGGCTTCTCCTGACTTCTTCGTCCTGGACCTTGCGACGAAACATGAATGAAGGCCAACATCTGAGGCGCTTAGTTCCACCTGTTGGATGAGGCAACCATGTCTTTGAATAATACAAGTGATGCTACCTGTAACTTGTAGTTTTCTCTGACGAACGTCCACGCTAACTCTGTGAATTCAACCCATGCTACTACAGGCTTGAATCTGGAGCTTAGGGCAGCAACTGCTTTGCTTAGGCTCAAATATTTTGCCTTAATATAGTTGATCGCCCACTGCTCCTCGTCCATGACCTGGGAGTTCCACAGGCTCTTGATCTTCTCCAGCGGTGCAGACGCCATCGCTTCCACATGGAGGTGAGGAAGCGGACGACACAAGGGAGGGGAAGGGAGGATCGTGTGGTCCTCGTCGACGACGCATCCGGTGCTGCACCTCCAGCCCGCGGATCCAGAGCTCGGTCACCATGGCTGCGCCGCGGGCTATGGTTTCGGGCGCTTGGG | |||||||||
gi|16336289|gb|BE558941.3|BE558941 HV_CEb0020N16f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenge TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): TGTTTACACTTCATCTTTTTAGTAGCACAATCGCAGGGAGGGGACAGAGAAGGGAAGAGAGATGGCGGCGGCAAGCGTCTCCCTGAAGAGCAGCCTCTTCCTGTCTTCCCCCCTTTCCGACTTCGGCGGCGCGGCCATCTCCATCTCAGCCCAGAATAGGAGACGGTCATGGCAGCCGAGGGGGGCCAGAATGCATGTGGCAGCAGCTGCAGACTCCAAGAACATTCTGATCATGGGGGGCACCAGGTTCATTGGTCTCTTCCTGTCCAGAAAACTTGTCCAGGAGGGACACCAGGTCACATTGTTCACCAGAGGAAAGGCACCCATAACCCAGCAGTTGCCAGGTGAATCAGATGCAGAGTATGCAGAGTTCTCTTACAAGGTGCTGCATTTGAAAGGTGATAGGAAAGACTTTGATTTCGTCAAGACCAGCCTTTCTGCTAA | |||||||||
gi|13080669|gb|BF623673.2|BF623673 HVSMEa0003K04f Hordeum vulgare seedling shoot EST library HVcDNA0001 (Cold stress) Hordeum vu TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTAAGCTTGCACCATGCATGAGCCAGCAATTGCACTGAAGTAATATTGATTGGCTATTTTTTGGGAAATAATTGTTTTCAGACGACTACAGCATACACTTCTACTTTTGGATACTTGGATGGAGAAGTAGCAAAAAAAATAGAACTAGCGGAACGAGAACCACAAATGAGCTAACATATATAATAGTATTCTTGCGCTACGACATACAAGAAAATACCAAGACAAATGATACTAGGTCCACTAGGACAATGGAAAACTCGGAGATACAGTCGACCAGACACGCGGCAGTTGCAATAGACCATTTTGTGGCTCAAACAGTTTCTAATCGTCACCAAATGTTGTCTTCTTTCCTGCGCTAGCTGTACCAGCACTCTGCCTGCTCTGATAGCCTCGGCCACCTCCTCTACCACCATCTCGGCCACCAGATCGGCCAAACCTGCCACCGCCATCACGGCCACCTGACCGGCCAAA | |||||||||
gi|19523844|gb|AJ435392.1|AJ435392 AJ435392 S00007 Hordeum vulgare cDNA clone S0000700027A01F1, mRNA sequence TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): CACGAGGCACCCTCTTCGAGTCCACTGGCCTTTATCATCAGTCGTCGGTCCGAAAGGTTGATCTTCAAACTGGCAAAGTTTTAGATCAGCACCAAATGGATGGACATATGTTTGGAGAAGGCTTAACACTTCTCGGCGACAGATTGTTTCAAGTTACTTGGTTGAAGAATGATGGATTCATATACGACCTACATAACTTTAGCAAACGTGAGAGTTTTACCCATAAAATGCGTGATGGGTGGGGGTTGGCTACAGATGGAAAAATCCTATTTGGCAGTGATGGTACCTCAAGGTTGTACCAGCTGGATCCAGTATCACTTGAAGTGACGAAGACAGTAACTGTAAAATATCAAGACAATGAAGTTTCCTATATTAATGAACTGGAGTATATAAATGGTGAAGTATGGGCAAATGTCTGGCAGACAGATTGCATAGCTAGAGTTTCTCATGAAGATGGCCAAGTGGCGAGCTGGATCTTTCTTCATGAGCTGAGGCAGCAACTGTGGAAATCTGGCAACACGGATATTGATGTTTTAAACGGTATAGC | |||||||||
gi|60289856|gb|DN188095.1|DN188095 HO24A05w HO Hordeum vulgare cDNA clone HO24A05 3-PRIME, mRNA sequence TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): GATCAAAGACTGACACAGCGTGTCATCCATACTCAAAAGTCAAAAGAATAGCATCATTAAGCAAGTACAGACCTATTCAACCTATCCTCGACCAAAAATCTATCTTATTGACTTGTTCACTGAATCAAATCGAGAGTTGTGCAAATTTGAGACTCTGAATATTCAGGATGCAGATGGAGTGCAGAGTTGAAATCCTAGAATAGAACTACAAGTGTACATGAGGAGGGACGTGAACAAGAGTTAATCTGTTTGTTCTTCGTCCACATACAACATACAAAGATCTGTGGCTTCATCTCAGTTGAGAATGTCTGTGAATGTAAGTTTCAGGGAGGCTGGACTAGCCTTCAAATGAGTTCTTTTTAAGGTGTGGAGGGGTGACGCGGTGAAGAAATGCTCCATGGGTCCATGTTTCCAGTATTTACCTGACTAAATTTCCTATTTCACATTGCGGTCTGGCAGACGGAGTCAGCAAGCTTGAGACAGCAACTGCACAACTTGCAAGAAAGTCACGATTATGAAGACCCATAGATTTTGTAACTTCCTTGAAAGTAATGCAGTTGTTGCCTCATGCTTGGTGCCACCACATGCAATAACTCAAACCCTCGGCGCATGCAGGCGGCCAGGCGCGCCCAAGAACAAGCACTCCCGGCTGCGGGAGGAGAGGCGGACCTAAAACT | |||||||||
gi|217045295|gb|GH209635.1|GH209635 HVSMEa0003K04f2 Hordeum vulgare seedling shoot (cold stress) cDNA library HVSMEa (HVcDNA0001 TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTAAGCTTGCACCATGCATGAGCCAGCAATTGCACTGAAGTAATATTGATTGGCTATTTTTTGGGAAATAATTGTTTTCAGACGACTACAGCATACACTTCTACTTTTGGATACTTGGATGGAGAAGTAGCAAAAAAAATAGAACTAGCGGAACGAGAACCACAAATGAGCTAACATATATAATAGTATTCTTGCGCTACGACATACAAGAAAATACCAAGACAAATGATACTAGGTCCACTAGGACAATGGAAAACTCGGAGATACAGTCGACCAGACACGCGGCAGTTGCAATAGACCATTTTGTGGCTCAAACAGTTTCTAATCGTCACCAAATGTTGTCTTCTTTCCTGCGCTAGCTGTACCAGCACTCTGCCTGCTCTGATAGCCTCGGCCACCTCCTCTACCACCATCTCGGCCACCAGATCGGCCAAACCTGCCACCGCCATCACGGCCACCTGACCGGCCAAACCTGCCGCCGCCATCACGACCACCAGATCGGCCGAACCTGCCACCGCCAGAACGGCCACCATCCCTACCACCAGATCGACCACCCCCACCACCAAATTGACCCTTAGGCTTAGCTTCAGCAACATACAAGTTGCA | |||||||||
gi|24301957|gb|CA024583.1|CA024583 HZ49L14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49L14 5-PRIME, mRNA sequence TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): CGGCACGAGGGGAAGACGACGCTTGCCAGGGAGGTGTATAGGTTGGTCGGTGCGGGGTTCAAGTGCCGCGCGTTGGTTTCGGTCGGCCGGAGCTCGGATGTCGCCAAGGTGCTCGGCGATATGCTATCCCAAGTGGACGGCGTGTACAGCAGAGGACGAGGTGATGCCGGCGATGTGAATCAATTGATTGTGAGGCTGAGGCAGCATCTGCAAGATAAGAGGTATCTTATTATGATTGATGATTTATGGAGTGTTCAAACCTGGGGGATAATCAAACACTGTTTTCCAGAGAACAATCTTGGGAGTCGGATAATCACTACAACAAGAATTGAGGCTGTTGCAAAAGCAGCTGCAGGTGACAATGTTTACAAGACTTGTCTTCTTGACGAAGCCGATGCCGAAACCTTGTTTAACCAAAGAACTTTTGGGGGTGTGGGTGGGTGCCCTGCCCATTTGAAGGATGTCTCAACTCGGATCAT | |||||||||
gi|24283675|gb|CA006693.1|CA006693 HU05H03r HU Hordeum vulgare subsp. vulgare cDNA clone HU05H03 5-PRIME, mRNA sequence TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): CGGCACGAGGGTCCTGATCGCTCGTCTCGTCTCGTCTCCCCTTCTTCCCTTCCCCTCTCGCCGTCGCCGAAAGGCCAGTTCTCTCTCCACCGCGTCGTCATTCCCCTCCCCGCCTTTTTCTATCCCCCCACTTGCGGCTTCTGGATCGGCCCCGATCCTTCCAGACACTTCCGCCCCCCCGCTATAAAAGGCCGGCGAGCGCCACCAGACCCGCCATCAGCGCTCGCTCGCACGCACCAACCCAACCCAACCCTACCCTACTCCGTTCGCGGCCGGTTGGTGGCTGCAGCCCGCGGAGGACTCGAGATACGCATGTGGCGGCACCAAGCATGAGGCAACAACTGCAGTCCTTGTGGGGAAGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCATACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTTTGCCAAAGCTATCAGAAAAAAACATAAAGATTCTTGGCAATCACGAGACAGGACATCATGTGAT | |||||||||