| mature miRNA: TTGCTGCCTCAAGCTTGCTGC species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24283675|gb|CA006693.1|CA006693 HU05H03r HU Hordeum vulgare subsp. vulgare cDNA clone HU05H03 5-PRIME, mRNA sequence TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): CGGCACGAGGGTCCTGATCGCTCGTCTCGTCTCGTCTCCCCTTCTTCCCTTCCCCTCTCGCCGTCGCCGAAAGGCCAGTTCTCTCTCCACCGCGTCGTCATTCCCCTCCCCGCCTTTTTCTATCCCCCCACTTGCGGCTTCTGGATCGGCCCCGATCCTTCCAGACACTTCCGCCCCCCCGCTATAAAAGGCCGGCGAGCGCCACCAGACCCGCCATCAGCGCTCGCTCGCACGCACCAACCCAACCCAACCCTACCCTACTCCGTTCGCGGCCGGTTGGTGGCTGCAGCCCGCGGAGGACTCGAGATACGCATGTGGCGGCACCAAGCATGAGGCAACAACTGCAGTCCTTGTGGGGAAGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCATACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTTTGCCAAAGCTATCAGAAAAAAACATAAAGATTCTTGGCAATCACGAGACAGGACATCATGTGAT | |||||||||
gi|30597365|gb|CD055455.1|CD055455 HO09E14S HO Hordeum vulgare cDNA clone HO09E14 5-PRIME, mRNA sequence TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): CGGCACGAGGCTTGAGTCAGCAAGACGGGGTTTTTCTTACCTACTACTACACGTTGTTCGGTTCAATCAGCCGGCTGCGATTCTTCTGAAGCAGCAGCAGCAGCAGCAGAAGAAGAAGAGACCTTGAGCCGGAGGTCGCAAGTGAGATCTCTTGAGCTGGAGCCATAGTTTAGTGCAATTAGTCATGTAACTGTAAGCGTAAAGCTCCTGCACGTGATTTCGTTTGGAAATTGGAATGAAATAAAACTAGGGATTTGGGAGGTAC | |||||||||
gi|60289856|gb|DN188095.1|DN188095 HO24A05w HO Hordeum vulgare cDNA clone HO24A05 3-PRIME, mRNA sequence TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): GATCAAAGACTGACACAGCGTGTCATCCATACTCAAAAGTCAAAAGAATAGCATCATTAAGCAAGTACAGACCTATTCAACCTATCCTCGACCAAAAATCTATCTTATTGACTTGTTCACTGAATCAAATCGAGAGTTGTGCAAATTTGAGACTCTGAATATTCAGGATGCAGATGGAGTGCAGAGTTGAAATCCTAGAATAGAACTACAAGTGTACATGAGGAGGGACGTGAACAAGAGTTAATCTGTTTGTTCTTCGTCCACATACAACATACAAAGATCTGTGGCTTCATCTCAGTTGAGAATGTCTGTGAATGTAAGTTTCAGGGAGGCTGGACTAGCCTTCAAATGAGTTCTTTTTAAGGTGTGGAGGGGTGACGCGGTGAAGAAATGCTCCATGGGTCCATGTTTCCAGTATTTACCTGACTAAATTTCCTATTTCACATTGCGGTCTGGCAGACGGAGTCAGCAAGCTTGAGACAGCAACTGCACAACTTGCAAGAAAGTCACGATTATGAAGACCCATAGATTTTGTAACTTCCTTGAAAGTAATGCAGTTGTTGCCTCATGCTTGGTGCCACCACATGCAATAACTCAAACCCTCGGCGCATGCAGGCGGCCAGGCGCGCCCAAGAACAAGCACTCCCGGCTGCGGGAGGAGAGGCGGACCTAAAACT | |||||||||
gi|13121122|gb|BF260992.2|BF260992 HVSMEf0023H16f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): ACGACCTCGAAAAAGAGTTAAGCCAGAGAGAAAGCTACACCCCACCGAATCCCACAACCGAGAAGAGGAACAAGGAGAAGGAGGAGGGAGCGAGCGAGAGCGCTGACGATGCAGCAGGCGATGGACTTGCCCCCGGTAGCGGTTGGCACGGTGTCCCCACCGGCCGGCATCACCACCGAGCAGATCCAAGAGTATTTGGATGAAAATAAGCAACTTATTTTGGCCATCCTTGAAAATCAGAACCTAGGAAAGTTGGCTGAATGTGCTCAGTATCAAGCTCAACTGCAAAAAAATGTCTTGTATCTGGCTGCTATCGCGGATGCCCAACCACCACAGAACCCTGCAAGTCGCCCCCAGCCTGGGTCTATGCAAGGCGCAGGGCATTACATGTCACAAGTACCAATGTTCCCTCCAAGAACCCCTTTAACCCCACAGCAGATGCAAGAGCAGCAGCACCAGCAACTTCAGCAGCAGCAAGCCCAGGCCCTTTCTTTCCCCACCCAGATGGTGATGAGACCAGGCACCGTCAACGGCATGCAGCAGCCTATGCAAGCAGTCGGCGACCTCCAGCCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCTTGAGGGAGCAAGCCTGACGCATCAGTGGCTTGGAGCCGTCTCGGAAACCTTGTGGCGCCCGAGAGCCACCAAGAGCGCGGGAGCAAAAAATGAGGTGGGCGGGGATGTANCAAAAATATTCCTAAGCCTGTTAGTGTTAGGGCAGAATAACGCCATGTATGGTTTTGACATATAAATGGCGTTAGGCTACCTGCATAGNCCGCGT | |||||||||
gi|16309127|gb|BI957872.1|BI957872 HVSMEn0011N13f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): GCCCCAACTCTCCTAGCTTGCGTGGGGGGGGAGATCCAAATGCAATATTCATCACATCTGCTCAAACAGACTCATGGGGATGTACTACCCACTCAGCTACGAATCATTGCTCGTTCCAGCATTACGAACAATCTTGTGAGACAATGTTTGAGCAAGTAGACAGTGCATTCCACAAAGGAATGTGTGGGGGGGCTGTTGCTATTCAGCAGCAGGTTGAGGCAGCACATACTCCATTGGTGCTTACTTTAAAGGAAACTATTGCTTCCGCGTCCTCAATCTCCCAGAATCTCACATCAGAGTTACTTGATGGGCATCGCAAACTTTTAGCGCTGGTTACATCTGGCAACGCCAATGCGCAAAATACAAATGTTTCGCAGCCCAATAGTGGTCCTATCACTGGACCCCCAGAGGTCGAGGCGCCATTAGACCCGATGAAGGAGCTGGGAAGACTGCTATCTGAACACAAATTTGACNAGGCTTTTACGGGGGCACTTCAAAGAGGTGACGTGTCAGTGGGGTCTCGGTTATCCTCTAAAGGGGAGGTGCGGGGGGCGTGTGCGGGTGGGTGCGGGCGTTGCGACGCGGGGGGGGGTGTGGCGCGGCGGGGGGGGGTGGCGGGGCGCGTGGGCGGGCGAGCGGGACGGAGAGGTCTGGGGTAGAGGGGGGGTGGGCGGGAGGGGGGGGGAGGGGGGGGGTGGGGGCGGGCGGGGGGGGAGAGAGGGGCGGGCGGGAGGTATGGAGAGGGCGGAGGAGGGCAGGGGGGCCGCGGGTAGGCGGGGGGCGCGGGGCGGGGGGCCGCCCGAGCGTAGCGCGGGGGGTAACTGCCTGGGTCTCCGGGCGGGGCGGGGCTAGTCGTGCCGGCCCCCGGACTAGCCGGAAGGAGNT | |||||||||
gi|217061258|gb|GH228935.1|GH228935 HVSMEn0024P10r2 Hordeum vulgare rachis cDNA library HVSMEn (HVcDNA0015)2 Hordeum vulgare sub TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): CACCGCGTCGTCATTCCCCTCCCCGCCTTTTTTTCTATCCCCCCACTTGCGGCTTCTGGATCGGCCCCGATCCTTCCAGACACTTCCGCCCCCCCGCTATAAAAGGCCGGCGAGCGCCACCAGACCCGCCATCAGCGCTCGCTCGCACGCACCAACCCAACCCAACCCAACCCTACCCTACTCCGTTCGCGCCCGGTTGGTGGCTGGAGCCCGCGGAGGACTCGAGATACGCATGTGGCGGCACCAAGCATGAGGCAACAACTGCAGTACTTGTGGGGAAGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCATACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTTTGCCAAAGCTATCAGAAAAAAACATAAAGTTGTGTTAGTTTCCCTAAACTGTAACACATGTTTTACAAATTGATCTAGAAATGATTGGCTCACTGTTAATTTAAACCAATAATTACTCGATAACTGCATATGCACATGTTATGGAAGTAAGGCGGTAGAATACTTATGTTTTCATCTACTGGCAGGTAGCAACACGTATAGGTATATCACTCTGA | |||||||||
gi|24962046|gb|BJ544057.1|BJ544057 BJ544057 K. Sato unpublished cDNA library, cv. Akashinriki vegetative stage leaves Hordeum vu TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): GCAGNAAACTTGAGGCAGCTGGCTGTACTTTAACAGTGTTGCCCAAGCGGAAGAAATGGCTACCAGCAGCTTATGTGAAGAACCAAGCTCGTGCTGAAGAGTACTTCAGCAAGAAAAAAGGCGGCGCTGGTGAATCTGATGAAGCTGCCGCATAGAGTTCATACAACACTGTACTTCTCTGCCCTTCTCTTTAGCATATGTTCATTGCTCCCATCTCATTTCAAAATTACCATGTAAGATGGATTTTGTGTTTATGTGATAAGCAAGTAAGTTGTGCCCTTATTTTCAAAAAAAAAA | |||||||||
gi|217060223|gb|GH227848.1|GH227848 HVSMEn0011N13f2 Hordeum vulgare rachis cDNA library HVSMEn (HVcDNA0015)2 Hordeum vulgare sub TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): AAACTTCGAAGCTACACTTGCTAGGCAGATCCAAATGCAATTTCATACATCTGTAAAACAGACTCTTCAGGATGTTTTACGCACTAGCTTTGAATCATTGCTTGTTCCAGCATTATGAACAATCTTGTAAGACAATGTTTGAGCAAGTAGACAGTGCATTCCACAAAGGAATGTCTGAGCATGCTGTTGCTATTCAGCAGCAGGTTGAGGCAGCACATACTCCATTGGTGCTTACTTTAAAGGAAACTATTGCTTCCGCGTCCTCAATCTCCCAGAATCTCACATCAGAGTTACTTGATGGGCATCGCAAACTTTTAGCGCTGGTTACATCTGGCAACGCCAATGCGCAAAATACAAATGTTTCGCAGCCCAATAATGGTCCTATCACTGGACCCCCAGAGGTCGAGGCGCCATTAGACCCGATGAAGGAGCTGGGAAGACTGCTATCTGAACACAAATTTGACGAGGCTTTTACAGTGGCACTTCAAAGAAGTGACGTGTCAATTGTGTCTTGGTTATGCTCTCAGGTTGATTTGCGTGGGTTATGTACAATGGCTCCAGTCCCTCTGAACAGGGAGTCCTTCTAGCCCTACTGCAGCAG | |||||||||
gi|12027629|gb|AL501414.1|AL501414 AL501414 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare cDNA clone HW04B23 3', mR TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): TTGCATAAATCTTGAGGCAGCAAATTTCACCGGCAGGGGCTTGCTTGATTATAGTGGTTCTTGTCTTTCTTCTTCGCTTGCCGCAAGCTNTTGCCCCTCCTTAGCCGCCGCCTCAGATGCTTGCAATCTTTGCTGCTTGCGTCCATCTCTTTGCTCGACTTCTTTTTCTTCATGGATGCTACCTTCTTTATACGCTCCTTGATATCCACTGAAGCAACATTTTCATCAGGTTCTGCATCAGCAGCATCGTCAACCACATTGTTCTGATCCGGTGTTTCTTCTGCCTCCTTTGAAGACTTGTCTTTCTTAGCTTTCTTCTTCTTGGAGGTCTTACTCTCCAGAGGAGCGGATGCATCTTCCTTTTTCCCTCCATCAGCAGCCTGACACGTACCTTTCTTGTAATTTGTTTCATCTTGAGTAGCATTACTTGATTCATATGAAATCCCCAACTCAGCCAACACAGCATCAAGCTGTTCCAACTCCTTTTTCTTTAACTCCTTCTTGGAGAGCTGTCTTTCCGTATCTTTAGGAGGTACTAGTGGAGCTACAGCTTTCTGAACTGCCGGCTCAGTAGGGACAGCATCTCCTGCTTCATGTTCATCCTC | |||||||||
gi|21270540|gb|BQ462758.1|BQ462758 HI01O15T HI Hordeum vulgare subsp. vulgare cDNA clone HI01O15 5-PRIME, mRNA sequence TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): CGGCACGAGGGCTGTTGCTATTCAGCAGCAGGTTGAGGCAGCACATACTCCATTGGTGCTTACTTTAAAGGAAACTATTGCTTCCGCGTCCTCAATCTCCCAGAATCTCACATCAGAGTTACTTGATGGGCATCGCAAACTTTTAGCGCTGGTTACATCTGGCAATGCCAATGCGCAAAATACAAATGTTTCGCAGCCCAATAATGGTCCTATCACTGGACCCCCAGAGGTCGAGGCGCCATTAGACCCGATGAAGGAGCTGGGAAGACTGCTATCTGAACACAAATTTGACGAGGCTTTTACAGTGGCACTTCAAAGAAGTGACGTGTCAATTGTGTCTTGGTTATGCTCTCAGGTTGATTTGCGTGGGTTATGTACAATGGCTCCAGTTCCTCTGAACCAGGGAGTCCTTCTAGCCCTACTGCAGCAGCTAGCAGTTGATATTGGCACCGAGACGTCCCGGAAAATTCAGTGGATGACAGATGTTGCTATGGCGATCAATCCGACAGACCAAGTCATCGCCATACATGTGAGGCCCATCT | |||||||||
gi|24227267|gb|BU976461.1|BU976461 HA03M07r HA Hordeum vulgare subsp. vulgare cDNA clone HA03M07 5-PRIME, mRNA sequence TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): GCGAAACTGCCAGTCCCAAAGTTGACAGTTGCAGAAACGTCGTACTCAGATGGTTATCCAGCAGGCTTGAGCCAGCATCCGCAACCAAAATGCTCAGGCAGATATCAAACTGTAATGTCAATGGAGTTTGCCCACTAAGCTTCCCAGACACAACTAAGGTTGCAAAAGAATGTGGTGGTACAGTTAAAAACATTACTGTATGCTGCAAGGCGATGGGCAGTTATGTATCTCATTTGCAAAAGCAAAGTTTCATAACAAATTTGCAAGCTTTGAATTGTGCCTCGGTCCTTGGGGCAAAATTGCAAACTATGAATGTCAGCACGAATGTTTATAGCTCATGCCAAATAACATTGAAGGATTTCTCACTTCAAGTTGGATCTCAAGAATCTGGATGCCTTCTTCCAAGTATGCCCTCTGATGCATCCTTTGACCCTTCTTCTGGGATTAGTTTCACATGTGATCTGAATGATAACATAGCTGCCCCATGGTCGCCTTCTTTGCAAGCATCGGCTTCGACATGCAATAAATCGGCAGCTGCTCCTGGTCCTACAATCCCAGAGAGGCCTGCGGCAACGTCGGCG | |||||||||