| mature miRNA: TTTTGGGACATAGGGAGTATC species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21127533|gb|BJ448912.1|BJ448912 BJ448912 K. Sato unpublished cDNA library, cv. Akashinriki vegetative stage leaves Hordeum vu TTTTGGGACATAGGGAGTATC EST sequence (targeted fragment marked with yellow): ATTCGGCACGAGGCTCAGTATGTCCCAAAAAGCAGTCCGGTGGTTCAGGGCAGTTTGCAGATATTATTGTGCGGTTTGAACCTATGGAGGCTGGAAGTGGGTATGAATTCAAGAGTGAAATTAAGGGAGGGGCAGTGCCAAAAGAATACGTACCCGGTGTGATGAAGGGAATTGAAGAAAGCTTACCCAACGGTGTCCTTGCTGGTTACCCAGTTGTGGATTTACGAGCAGTGCTGGTTGATGGCTCCTACCACGATGTTGATTCAAGTGTCCTTGCCTTCCAAATTGCAGCCAGGGGGGCCTTCCGTGAAGGATTGAGAAAAGCTGGCCCACGACTCCTGGAACCTATCATGAAGGTTGAAGTGATTACCCCTGAGGAGCATTTGGGTGATGTTATTGGTGACTTGAACTCTAGAAGAGGGCAAGTTAACAGCTTCGGAGATAAGCCAGGTGGACTTAAGGTGGTTGATGCTTTCGTGCCGTTGGCCGAGATGTTCCAGTATGTCAGCAGTCTGAGGGGAATGTCCAAGGGGCGCGCGTCGTACACAATGCAGCTTGCCAAGTTCGACGTTGTCCCACAGCATATCCAGAACCAACTTTCTGCGGCAAAACAAGAGGAAGCTGCTGCTTAAATCTTCGGCATTCGTAGATAATATATATGAGGACGGCAGAGCAGGTGAGTATAGG | |||||||||
gi|60278769|gb|DN183512.1|DN183512 HO16P23S HO Hordeum vulgare cDNA clone HO16P23 5-PRIME, mRNA sequence TTTTGGGACATAGGGAGTATC EST sequence (targeted fragment marked with yellow): GCACGAGGGCAATATCTAACCATCACCCTCTTACCGTTACTCGCAATCACGACTGTTGCCATACCACTATTGTCTGGACTAGAATCTATCAACATTCCCGCTATTCCAGATATTCCAACTGTTCCAAAAGTTCCAGACGTTCCAGATGTTCCGGCTACATCAAAATTAGTAAAGAGAGAATCTATCAACATACCGGCCATACCAAATGTTCCGGCTGTCCCCAAAGTTCCAGACGTCCCGGCTACATCGAGAGCATTAAAGATTCGATCCATCAGCATACCGGCTATTCCTAGCATCCCTGAAATTCCAGCCATTCCAGCCATTCCTGATATCCCTGAAATACCCGCAATCCCCGATGTTCCTGATGTTCCTGATGTCCCGGAAGTTCCTGACGTACCTGAAGTTCCTGACGTCCCCGATGTGCCGGAAGGAGATGATTCGGCTGATCAACCACCAGCGTATGACTCGCCGGCTCCAGCTTATTCCGAAAGTAGCTCGGGTAAAAATGTCGAAAGCTCTAGTGAAGATAATAACGGCAAGATGAACAACGGGAACTTACAAAGCAAGTCATCAGACCAGTATGAACGGGATGAACC | |||||||||
gi|24282926|gb|CA005944.1|CA005944 HU08A18u HU Hordeum vulgare subsp. vulgare cDNA clone HU08A18 3-PRIME, mRNA sequence TTTTGGGACATAGGGAGTATC EST sequence (targeted fragment marked with yellow): GTGCAAGCAGTGAAACGCATGATCATTGAATCATATCCAAGTTCAACACCAGAAAACGCCATCAAAAGCCAAACATTTCAGTGATCAGACAAGCTTAAGCCTTGGGTGATACTGATGGCTATTTCCATTCGCCTGAGCGTAAATAATTGAGTTGCTTCCCCATAGTTTAAACGCATGACTGTTCAGGCATGATATAAACATGGACCCTTGTTTGTTGTTTACGTGGCTTAGTTGCTACTACCTATGTCCCAAAATATAAGATGTTACCGAGGTCGTATTTCATAGTTCGATAGTTTCTGATCCTTGGAGCATATTTATAATTTTCATTATCCGAGGTCTCTTGTTGCGTTCAGGATTCACACATATTAGACTTGTCTTGATGCATCTCTTTATTTGTTCACAATACGTGTCTAGGGATCCACATCCCAGTGATCTGTGTAACACATTTCTCCATTTCTCAAGCACAAGCTTGATAAATTCATCTAAAGGTGTTCTACTGACGTCTGGGTAGTCCCTGTGTCCTGTTACTACCTCCATAATAATTACACCC | |||||||||