| mature miRNA: CCTCCGTCCCAAAATAAGTGA species: Hordeum vulgare subsp. spontaneum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21165024|gb|BJ486588.1|BJ486588 BJ486588 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CCTCCGTCCCAAAATAAGTGA EST sequence (targeted fragment marked with yellow): GAGAAGACAACCCCGAGGTCGAGCGCCAGGGATCAAGCAATACAAGTCTTTTAGGGAGCCTGAAATCGTTTGCTTCTGGGATCAGAAACTTCTGGAGAAATCTGTAAATTTGTCTCATTTTGGCTTGAAGCTAACACACATGAAGTCCCCTTATCTATCATTTCGTGAGCCTGGAGCTGCTTGTGAAGCTTTGTGAAGGCTACAGAGTTAATGATCCAAGTGCCCCCTGTTTAGCATTTTTGTGAGCCTGAAGAAAGCTGTAAAGTTATATTTTTGCACTACTGAACATTGGTCTGATTCCTGCAGTGTCATGGGACTTATAAGCTACTCCCTCCTTCCCATATATAAGAGTGTTTTTAATACTACACTAGTGTGAAAAACATTCTTATATTATGGGACGGAGGAGTTAGATAGGAGCATATTTGGGTGCATCTAATGTTTACAGGCGGTCTATCATAATGCACTGCTG | |||||||||
gi|21161007|gb|BJ482549.1|BJ482549 BJ482549 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CCTCCGTCCCAAAATAAGTGA EST sequence (targeted fragment marked with yellow): ATCTAGGCATGTGATCTGCAGGTACTCCCTCCGTCCCATAATATAAGGCGTTATTACATCCAATATACTCACATATTATGGGACGGAGGGAGTATCTAGTTGCTTCCTTTTGAATTAAAACTTTTTAACAACTAGAGCCGCTCTCTTCATCTCCTGAATACTCTTATGGGTGCATCATACCTGAAACCTCTCGTCTTTCAGGTTTTCCAGTTGCAAGTCGATAATGGTATCCCGATAAAGAGCTGGTTTGATGACCCCGCGGACCAGGAATTGGTTGAGTTACTCCCGTTCCTCGAGACCCTTGTTGATGCAGAGGACGTAAGGCCACTAATCTCAAAGACTTTTCACGGCACAATCCAGCAGGATTAGACTTAAGATGCATCCTTATCATGCACTGAGCCTGAGCTTGCCAGTTCCAGCGAGCTCCATCTTGGGAAATTAGGTATTAGGATCAGCATTCACCATTTATGTTATGTTGGCTGTTACAAATAGCAAGCATAAACTGCATGTCGCCATGGCTTGTATATGTAGTATTGTTCGGTTTTCTGTGTCGCAGGTCTTTGTACATAAACTATAGTAT | |||||||||
gi|21160867|gb|BJ482407.1|BJ482407 BJ482407 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CCTCCGTCCCAAAATAAGTGA EST sequence (targeted fragment marked with yellow): CATGAACTAATGTTGTGTGGTATTATTTAGGGCTTGTGTCTTCAAAAANAAAAGAAAAAAGTTAGGGGTTATGTTGGATTGTAGCACAATTTTGTCTATGAGACTGTCATTTTTCAAGTACTTGAGCTGTAGGAATCTCCATGGCATGTATTCCCTCCGTCCCAAATAAGTGACTCAACTTTATACTAAACTTAATATAAAATTAAATCATTTATTTTGAGACGGAGGGAGTAGTAGTGAGCTAAACGCTCTTATATTTCTTTAT | |||||||||
gi|14527897|gb|AV835808.1|AV835808 AV835808 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves CCTCCGTCCCAAAATAAGTGA EST sequence (targeted fragment marked with yellow): TTCAATAGCAGNNTCAAATTAGNATGGTCATGTACATATTACATGGTACTCCCTCCGTCTTAAAATAATTGTCTCAACTTTGTACTAGCTTTAGTATAAAATTGTACTAAGGTTAAGACACTTATTTTGGGACGGAGGGAGTACATATAAGGCTCAACCAGNATTAATTTAGGGGAGGGGGGAGAGGACTGTACAATTTCTGACAAAATTGGAGATGAACATATCTCCTGATCACAAACTCACCCTGACGTCCGTCAGAAAGATGAAAACCTCAATGCTGGTAAGGCCTCAAAGTTTCTCTAGTTCACGTTCCATCGAAGCGAAGTCAAAACCTTCCCAATCAAGTCCTACATCCAACTCAAACATTGGCAACGGTAGATGGCTGATGTCTGCCAGCCCGATGTAGTCGTCGCCAGGCGGTTTGCCTGTTGTGTCAACGAAGTCATTGACATGAAACATATCTGCCAGCCTTGAAATATCATCCAGTGAGAGTTTGTCAGTTGTGCAAACATAGTCACTGATAGGAAGCTCATTTATCTGGCTGTGGAATGCATCCACTGGAATTTCTTCATCGCTAGGTGTCGATGAGCAGTGCACTAAGCTTTCATCAACATTCATCCGGCCAAGGAATGCATCTACCTCAATTTCTTTACCTGGCAGTTCTGGTGAGCAATGCAGTAAGCTCTCATCAGCAGTGTCAGGGTCTATCTCCATTGGCGCTACCTTG | |||||||||
gi|21164188|gb|BJ485746.1|BJ485746 BJ485746 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CCTCCGTCCCAAAATAAGTGA EST sequence (targeted fragment marked with yellow): CAATTCATGAAAAATGCTTGAAAGAAATGAAGGAGCATTGCCAATTCGCATGCCCGCTCTGCTCCAAGTCGGTGTGTGACATGTCAAAGGCATGGGAAAGACTGGATGCAGAACTAGCGACTCTGTCAAACTCCTTCGACGATAAGATGGTTCGCATATTGTGCAATGATTGCGGGGCGGTATCAGAGGTGCAGTTCCACTTAATTGCACATAAGTGCCATAGTTGCAAGTCATACAACACCCGGCAAATTTGAAGTAGTGAGCCATGGAGGGACTCTACGTTCTTCCTAGAAGTTGGCGAGCGCGCTCCAGCAGTGGAAATCGATTCATCTACGTGATGTTTTCCACGAAGGCAGATCACTGGACAGTTTATCTGCATCCTCCGCAGTTAGCTGCTGCCTTTTGTTTGTCCTTCATTTGTTTCTGCATGGTCTCCTTTTGTTCAGTGTGTAACAGCTTCCGCGTGACCGATCAAGCCTTGCATATTTTAGCACAACGCGGCATCTGGTAGAATTGTGTTCTACTCCCTCCATCTCAAAGTAAGTGACTCAAAAATGACTCTTCTCTTGAGTCATTTTTGAGTCACTTATTTTGGGACGGAGGAAGTACTCGATTGGTATCATTTCCAGCATTGGTCAGGACTGCAACCTATAGGATCACCACTCTGGCGAGTCNTGCTGCGTGCATGCAGCAGGCTGTGGGCATAGGGTTTAGGTTGCAAAATTTCTNATTCTCAATTTAAAT | |||||||||
gi|18241224|gb|AV945427.1|AV945427 AV945427 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CCTCCGTCCCAAAATAAGTGA EST sequence (targeted fragment marked with yellow): AAGCTGCAGTTCAGGTGGGCGCTTNTGCTCTCCCTCCACACGCCCTACATCCACGTACACTCTTCTATCGGTACCTACACATACATGCGCCAGGTGGCTGGATCTCGCAGGGGCGATGTTTTTACTCACATCTCATGATGCATGTCAAGCTATTTGGAGCTTGCTTGCATCATTAAATGAGCATGCACTAATTGGACACAAATAAAGGAGATGAGTACTAAATGAACTTGTACTAAACAGAAACAATTTATTTATGGTGTACTCCCTCCGTCCCAAAATAATTGTCTCAAGCTAAGTACAACTTTATACTAGAGGTAATACAAAGTTGAGACATTTATTTTGGGACGGAGGGAGTACATAATTATCAAGTTGAAAGCTGATCTATAAATAGCAAGTATTGTCGTGTGTAAACCTTTTACTTGGTTCGTCTTTTACAGGAGCTCCATGGCTAAGAAAGTTAAAAGTGCGAAAGTGTGAACCCGTGAAACCCTACTCAGCAAAGAGTTGTTTGTTCTATTTGAGTGTAACGGATAGTAAATATTGTAAGTTGGCATATCTGGGGTTGGGGTTGTAATAGACATCAACAATGAATAGACNATTTAGT | |||||||||
gi|21164201|gb|BJ485759.1|BJ485759 BJ485759 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CCTCCGTCCCAAAATAAGTGA EST sequence (targeted fragment marked with yellow): CGTAGTACACCTCCTGCATCGAAATCCAAGCAAAAGAGGAAATCAGGTGGTGATGATGCCAAATCATCTAGTGGTGCAGCTTCAAAGAAAGCAAAGGTGGAATCTGATACAAAAACATCAAGTATCAAAGACGAGACACCGGCTTCATCAAAACCTACACCAAAGGCCTGTGCTTCATTGAAAAGTGCCAATGTATCTCCTGTGACAGAGGATGAGATCAGGACTGTTCTTCTTGCAGTGGCTCCTGTCACCACACAAGATTTAGTGTCCAGATTTAAGTCTAGACTACGAGGTCCAGAGGACAAGAATGCCTTCGCTGAAATTCTGAAGAAAATTTCAAAGATACAGAAGACAAACGGCCACAACTATGTCGTCCTTAGAGAGGATAAGAAATGATGGGCTCTAAAGTGGTGATTTTCTTCATTGCGAAGTTTCCTCATGTCTTTCTCTGGAGATAATAGTTTTGTACTCCCTCCGTATCAAAATAAGTGTCGCTGATTTAGTATAAAATTTGTACTAATTTAGTTATAAATTTGTGACACTTATTTTGGGACAGAGGGAGTATGCCGAACTTCTACTGCAGCTTGCTTCTAGTAGAAATCAAATAATGATAGGTGCAATGTTGTCATTTCCTGGTGTCATTCTAGAAGAAGTTGCAAGGTTATGATGATGTGTGAGAACAGGTATATTGATGCCAAGACCGTGGTCTCTCTAAACCTANAATCCAAAGNAGTAAAANCTAGAACGA | |||||||||
gi|18239961|gb|AV944164.1|AV944164 AV944164 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CCTCCGTCCCAAAATAAGTGA EST sequence (targeted fragment marked with yellow): GCGTTCTAAGTTCCTGGTATACAAGCGCTGAGATTCTCAACTTTTGTGCTATTGTAATACTGATATTACCTTCTGCTGGAAAGTATTATTAAGTCAATGTTCTGGGAGAAGACGTTGAGTCAACTAGTTTGGTAATTTACCTGGCTAAGATGCAAAAGAGGGCATTTTGGATGCCTATAGTGGAAAAAGAACTGAGAAAAATCGTCTCGACGGGTTGTGTCAAGCAAGGAAGGTGTGACAACAAACACGCATTTTGATATTCTGGCAGTCTTTTGTAGTGTAATTTAGTACTTCCTCTGTCCCAAAATAACTGTCTCAAGCTTAATACAAATTTGTATTAAAGCTAGTATAAATTAAGACACTTATTTTGGGACGGAGGGAGTATCTAAGAGTATATTCTCGGTCCCTAGTAGTGATGTTCTAGATAGGACCAGTGGGGAAGCTACAAGATGTAATTTCCACTAGTGGGGAAGCTAGGAGATGTTCTAGATAGGATTTGGGGCTAACTACGTTTTTTTAAGGTGTAATTTCCACTAGTGAGCAATGAGAAAGACTAGATCACTGAAGGATGTATGGATTCGNATTGGGACCGAATAGNATGTAT | |||||||||
gi|14526800|gb|AV834711.1|AV834711 AV834711 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves CCTCCGTCCCAAAATAAGTGA EST sequence (targeted fragment marked with yellow): GNAATTCGGCACGAGGGTTTATTGTATACTCCCTCCCGTGCCCAAAATAAGTGAGTCACTTATTTTGGGACGGAGGGAGTATTAGATTGTAAAAAACCTCTAAGTTAGTAAACTAGATCTGTCCAGTTTTAGGAAATTTGTAAATACAGTGTGCCTTGGTAAAAAAACACACTTCTTTAAAAAACTGGAAATCATATTCTTATCACCAATCTTTTTTCATTTATATTCATATATTNNTCTGCATATCTTACTTGCTCTCTCAGCTACAGGGTTATTCATGTTTCTTCTACTCGCGTTTGTTTCTGACGGCAACAGAGGCAAAGGAACATACATACTCAGGGTAGTCCCGACTGATGCTTTTCATGCAGATAAAACAGTACGGATAGCTGACCAGAAGTGAACATGGAACCTCTTGAATTATTGCGGAAAGGTGTGATTTGGGAGAATATATGTTGATCAGAATAGGTTTTGTGAACGTCTGTAGGTCATGCACGTATGCAGAGAATTGATTC | |||||||||