| mature miRNA: CTCCGTTCCTAAATATAAGTC species: Hordeum vulgare subsp. spontaneum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21158631|gb|BJ480160.1|BJ480160 BJ480160 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): TTCGGCACGAGGTACTCCTTCCGTTCCTAAACATAAGACCTTCTAGAGATTTCAATATGGACTACATATGGATCTATATAGACTTATTTTAGAGTGTGCATTCACTTATTTTGCTCTGTATGTAGTCCATAGTGGAATCTCTAAAAGGTCTTACATTTAGGAACGGAGGGAGCAGAATGCTGTTCTCAATAATGCAACAGTTGAAACAGACAATCCTGATCTGCGTGATCGAGCTTACATATACTGGCGACTTCTTTCTACTGATCCTGAGGCAGCAAAAGATGTTGTTCTGGCAGAGAAGCCTGTGATCAGCGATGACTCTAACCAGCTTGACTCTTCGCTTCTTGATGAGTTATTAGCAAACATTTCTACATTATCATCAGTTTATCACAAGCCCCCCGAAGCCTTCGTCAGCCGTGTTAAGGCAGCTCCTAGGGCGGATGATGAGGAGTTCGCTGATGCTGGAGAAACTGGGTATTCGGAGTCACCATCTCAGGGAGTGGATGGGGCATCACCGTCCTCTAGTACTGGCACTTCATCAAATGTACCA | |||||||||
gi|14528005|gb|AV835916.1|AV835916 AV835916 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): ATTTAGGAACGGAGGGAGTACATCCGTATGTGGTTCATAGTACAATCTCTTAAAAGACATATATTTAGAAACGGAGGAAGTAAGAAATAAGAACTCTGAAAGGTAAAGCTTGCTTCTGGTTGTAAGTTCATCTACAAACAATGGGCGGAAGTAAAATCACAGTTCATCATAGATGGGAGGAGCATTTGTTGGGGCAGGCCCCTATTGCACTTTACCCAAGATATCTNCAGCTGATACTGAGCCTGATCCTGATAGCAT | |||||||||
gi|21164211|gb|BJ485769.1|BJ485769 BJ485769 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): TTGTGTATAATAACTGCCATTTTGTTCACAAGAGGGTCCAGTTAGATTGGTATCTTCAGTGAGACATGTCATAGAACAAAATAAGCTACAACTATGGTAGCATATCTAGTAAATATGGCATATCCACATGGCTCAGAGCACGTTATGATTGGGTTTGAGATGGCTTCTACCTCAGCTTATGGTCCAGATAAATCAAAAGCGGATCCAAACCCAAAGCTTAAGAACAGCTTAGGTTGTGTTTGATTGAGCACTTGGGTCTTTTAAGCCAAAAGCTCAACCAAACACCAAATCCAGGGAATTTGATGTTTGTGTGTATGTTGACATGTACTCCCTCCGTTCCTAAATATAAGTCTTTCTAGAGATTATACTAGAGGATTACATACGGATGTATATAGACATACTCTAGAGTGTAGGTTCACTCATTTTGCTTCGTATGTAGTCACCTAATGAAATCATTTAAAAGAGTTATATTTAGGAACGAAGAGAGTAAGTACAAATGCAGGCAGCAGTAGTACTTGCANAGTTCATGTCACTTCATTCTAAATATAAG | |||||||||
gi|21164572|gb|BJ486131.1|BJ486131 BJ486131 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): TGGCGTTATAATCGTGGAGATACTGACAGGACAAAAGGGTTATTCCGAAGATGATAATGTAATTGATGGTTGGATGATTCAATTGGAGACATCAGACCAGGCGGACACTCTGTTGGAACAAGTAAGAGTATGCACAAAACTGGGGATAGAGTGCATGGATCTGGACCCAAAGAAGAGACCTGTCGCCAGACACATAGTCGATCTGCTTGGCAAAACGGAAAGTGCTATGTATGCAGAAGAAACTGCCATCAGCTTCCCTGCCAAAAAAAGGTTGAAAGAAACTACCATGAGCACGGAGTGGTGGGACAGCCTGAGCGACCCGGAGTTCCGGCGGGCCTTTCGCATGTCAGGCGTCACGTTTGATGCGGTCTGCGACGAGCTCAGCGCCACCGTCGGCGAGGAGGCGGACGCCATCATCCCCATGCACCAGCGTGCTGCTGTCTGCCTCTGGCGCCTCGCCAGCGGAGAGCCCTTCGCCGAGATCTCCTGCCGCTTTGGCCTCGGCATTTCTACCTGCCACAGCAAACGTATGTAGACGCCTAGTGAAATCTCTTAAAAGACTTATATTTAGGAACGGAGTGAGTATTTAATACTCTAGGTTTATGATGGATTGAGGTCGATGAGTGAAGTAATAGTAATAGATGCATGCAAGAGTCGGTCTATTTATTTATGTACACGATGCATTCC | |||||||||
gi|21160752|gb|BJ482291.1|BJ482291 BJ482291 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): CCCTCCGTTCCTAAATATAAGTCTTTTTAGGAGGTTCCACTAGNATATATATATAGACATACTTTACAGTGTAGATTCATTCATTTTGCTTCGTATGTACTCCCTCTGTTCCTAAATATAAGTCCTTTAAAGATTCCACCAGGGNACTACATACGGAGCAAAATGAGTCAATCTACACTCTAAAGTATATCTTTGTACATCCGTATGTAGTTTGTAGTGTAATGTCTAAAAAGACATATATTTAGGAACGGAGGGAGTAGTATTTAGGAACGGAGGGAGTAGTTGCTAAAGGTCGTTTGCTATTTATAAGAGTTTTGCAGGTGGGCGCCTGTCAGACCGCTGTTAAAATCTAAAATGTGGAATTTTGTGATACCTTGCCTCCCTGAATGTGGAATTTTGTGAAACTATGTCTTAGTGTGGAGTTATGTGATAACTTATACAACAAATGTAGAGTTTTGTGAAATTGTACACCTTATAGTGTGGTACAAATTCAAAATTAGCAGCATTCTTTATTTGATTGTGCCAGCATCTCATCTCCGTACTGCCTAAAACATGTTTGTTTTGTCTTGATGCTTTAAGGGTCATGCTTGCAACCTCCATATTCTGCACATGCACTT | |||||||||
gi|21160752|gb|BJ482291.1|BJ482291 BJ482291 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): CCCTCCGTTCCTAAATATAAGTCTTTTTAGGAGGTTCCACTAGNATATATATATAGACATACTTTACAGTGTAGATTCATTCATTTTGCTTCGTATGTACTCCCTCTGTTCCTAAATATAAGTCCTTTAAAGATTCCACCAGGGNACTACATACGGAGCAAAATGAGTCAATCTACACTCTAAAGTATATCTTTGTACATCCGTATGTAGTTTGTAGTGTAATGTCTAAAAAGACATATATTTAGGAACGGAGGGAGTAGTATTTAGGAACGGAGGGAGTAGTTGCTAAAGGTCGTTTGCTATTTATAAGAGTTTTGCAGGTGGGCGCCTGTCAGACCGCTGTTAAAATCTAAAATGTGGAATTTTGTGATACCTTGCCTCCCTGAATGTGGAATTTTGTGAAACTATGTCTTAGTGTGGAGTTATGTGATAACTTATACAACAAATGTAGAGTTTTGTGAAATTGTACACCTTATAGTGTGGTACAAATTCAAAATTAGCAGCATTCTTTATTTGATTGTGCCAGCATCTCATCTCCGTACTGCCTAAAACATGTTTGTTTTGTCTTGATGCTTTAAGGGTCATGCTTGCAACCTCCATATTCTGCACATGCACTT | |||||||||
gi|21165194|gb|BJ486760.1|BJ486760 BJ486760 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): AGAAAAAGAATGAAGCTCTTCCTGCTGAGACAAGTGATGGTGACAAGAGTATAAGCCCACAGGTTATGCTTCCTGGCAGAGGTGATTTGTGGTTCCCTGGAGGCAGCCCTTTACCAAAATCTGCTCTAGGGTCTCTTGAATTCAGACGGGCAATGTCGTCCTTGCTCCCAAAGTAGGGGCAAACATCACTGATGCAACCATCATTTTGTGGCCATGACATGGTGGTATATTGTAAAATCTGGATGGTCACTTGGTCAATCATCACATCCGAGCCTGAGAAGCACCACCCCTAACTGGCGACGACCTTTTGAATGCTGTATAATCTCGAAACCTAGGTACCTTTTCTATCTGTAGTGCTAGGCAATGCTGTATGATAGTGTCTGACTTCGTGTTCCTGTAAATGACGTCTGGTACTACTTGCTTGGTGTCGGCGCCTATTACTCCCTCCGTTCCTAAATATAAGTCTTTTAAGAGATTTCACTAATGGTCTACATACGGAGCAAAATGAGTGAATCTACATTCTAAAATATGTCTATATACATCCGTACGTAGTTCATTAGTAAAATCGTTAGAAAGACTTATATTTAGGAACAGAGGGAGTAGTATATTACTANAAAAAGTAGGAACCATA | |||||||||