| mature miRNA: CTCTGTAAACAAATATAAGAG species: Hordeum vulgare subsp. spontaneum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21161215|gb|BJ482757.1|BJ482757 BJ482757 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCTGTAAACAAATATAAGAG EST sequence (targeted fragment marked with yellow): AGAAGGCTCGTGCTGCTGCAGCACAAAGGCAGGCTAGGGAAGCTGAAGGGGGCAATGGTACATCAGACGGAGAGCCTAAGAAGGATCAAATGGTATTGGAAATATGTGTCATATGCCTTGAACAAGAGTATAATGCAGTTTTTGTGCCGTGTGGCCACATGTGTTGCTGTATGAACTGCTCTTCTCACGTTACAAACTGTCCACTTTGCCGACGAAGAATCGACCAAGCTGTCAGAACATTCCGTCACTGATGGCGGCACTATATGATGCAAAATCATGCGCTTGATCATGCCAGGTGAACCAACATCTTTCAAAACCACCTGATACTAAAAGTTCCGGTCATCGCCGTGGCTGCCAGTGTGCCGATATCTGGAATGCAGAACTGAGCTGAAGCTTGTCATGGGAGTTTGTTTTACAGACGGAACTTGAAGCGATGCAAAGTCATGCTTCTTCAACAGTTACTGATCTTGCTTGTACTTTTACAGTTGTGTACAGAGTGTTCTTGTGTAACTCCTTGTTTCTAACAGCACTTACGGATGCTAGTGGTGGGTCAATTGATTCTACCCAAAGGAAATGCTTTGTTGTTTGACACTGTAAAGGATAATCACATCTTCANATATATCGGGCAC | |||||||||
gi|14527716|gb|AV835627.1|AV835627 AV835627 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves CTCTGTAAACAAATATAAGAG EST sequence (targeted fragment marked with yellow): CTAAATGCTCTTATATTTGTTTATGGAGAGAGTNCATCCGTACGTAGTCTTCTGGTGGAACCTCTAAAAAAAGATATTTAGTTACAGGGAGTAAACAGTAAGCATTGAGCTACAGTATTTAGATGGTTTTATGCGCACATAACAGACGAGATATCTCAGCATGGAGTTAGAACTCTAGAATCTAACAGTGGATCATATTTAACAATTCAGTTGTTAAACATAAAGTAGACTTATTGCCTAGCATGTACAGTAGTAGGACTCGGGTGCTACAACGCATGGAACGAACGATTAGTTTTGAAGGGCTAACGTTCTAATGTAAATAAAACAAAAGGAATCACAGCGCCATACTAATAGACGCACAAACTGTTTACTGTGTGCAAAGCCAGCAGCGACAAGGTCTACATACACGTTCTACGATCAAGGTTTACGATTTACATACATTATATCAAGACACTTCAGTGGCTGTTTCCTTTGGTAGAACCACAGCGATTAGACACTCAGTCTGTTGAGGCGGAAGGCCTAGCAGGCCAAACACCTCGGATGTGGGAGGAAGGATAAATAGCAGCCTCGACCCCATGGGCTTCACAGGAGGGATCTTTATGACCCCGGCGTACTTGTTCTGCTT | |||||||||
gi|21160999|gb|BJ482541.1|BJ482541 BJ482541 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCTGTAAACAAATATAAGAG EST sequence (targeted fragment marked with yellow): GACGTGTACAGCTACGGCGTGCTGCTCCTGGAACTGATGAAAGGGAAGAGGGTTTCGGATTGGGTGGTGGATGGGAAAGACGGGCTTGAGACTGATGTCAGAACCGTGGCGAAGATGATCGTCGACAGATCCAAGCACGGCGATGGAGGATGGGTTGCAGACCTGGTGGATGAACGCTTGGATGGCCAATTCCATCATGCGCAAGCTAAAACATTTGCCCAGTTGGCTGTCTCATGTTTAGAGGAAGACAGGAACAAAAGGCCCGGTATGAAGAGTGTTGTGCTCATGCTCATCTCTGCAGATGATGAGTCCAGAGATCATGAATATCCAGAAATCTGATCCAGTTCATTCTGGACATGTGTTAGTGTTAATTGTTAGTGTTAGTGTCAGTGTTAGTGTTACTGTGTGTATGTATACAAACAACCTTTGTCACATCAAATTATATATATTCCTCCTTAAAGAAATATAAGAGCGTTTAAATCACTACTTTAGTGATCTAAATGCTCTTATATTTGTTTACAGAGAGAGTAGAAACTAGAACC | |||||||||
gi|18242954|gb|AV947157.1|AV947157 AV947157 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCTGTAAACAAA-TATAAGAG EST sequence (targeted fragment marked with yellow): AACGAGACACATGACCCAGACGTGCCTGCTGTTTCCCACAGCAGGGGTTTGACCCCCTTTGTGTTTGTTCCATTTGAGGAGGCTGATACTTCAGTGCTAAACCTGCCAGTGGAGAAGATGGATTACTTTGTCCCTGGGTGAGCAGCACTTCCTAAAGGAGGCCACGACGATGGGTAGTGGAAGTGGAGACGGCCGATAATCTCATTTCAGGCTGATATTATGATGCGGATGGAGACTACCAGCTTAATTCGTTCCATACCGTGTTCATGTTGGAACGATATGTACATATACAGTACTTGTCTTGTTTCCTTTTCAGGTTGAAGGCATGTTGTTGTATTATATTCCCTCTGTAAACAAATATAAGACGTTTTAGATCACTAAAGTAGTGATATACAATGTCTTATATTTTGTTTATAGAGGGAGTACTATATGCTATGTCTGTTGCTGGTATAAAGTGCGCCAGAAAATAAAGACGATGTCGAAACGGGTGGAGGCACCCTTGTAACAGCCGAGTTATGTANAATTATGGGGGTATCAATCGCATCGCAGTAT | |||||||||