| mature miRNA: CTCTGTAAACTAATATAAGAA species: Hordeum vulgare subsp. spontaneum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21163422|gb|BJ484977.1|BJ484977 BJ484977 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCTGTAAACTAATATAAGAA EST sequence (targeted fragment marked with yellow): ATACTACACTCAAAGCCCAGATAATAGAACTGCAGAACGAGCTTGGTGCAAGGATCAGAAAAAATAACCTGAATTTAAGCAGCCTTGGGGTGTCACATCCAATAGGGAGCAGCTGCACTGCTAATTTAGCAACTCACCCAACGCGGCATGATATATGGAGCAATACTTCTAATGTAAGCACCATGCGCATGGTGCCCCCAACAAACACACTACCTCCAGTGCAGAATCAGCAGCATCACTCTGTTGTTTCTGGTCAGGTTGCATCACGGCCTCAGGAGCTCCAGCTCTTCCCGGGGACAACAGCATCCTCGGACCGAGAATGTTCCGGATATAGAAGCAACCCAGCTACTTCTTCGAGCCTTGCGGATTCCTTGCCTGGACAGCTTCGTCTCAGCCTTCCACCAACATCACAAGAAGAAAGCAGCAGCAGCGGTGCATCCGGAAATTCTCCCTCTGTCAACTAATATTAAAGCGTTTAGATTATTAAAATAGTGTTCTAAATGCTCTTATATTAGTTTACGGAGGGAGTAGAAAAGAAGGAGAAACCGGTTAGCCAATTGAGGGGTTACAAATCAGTTNCTTGGTGATAACAGCTCTCCTGTAAATACCAACAAACTACTCACCTTA | |||||||||
gi|18242810|gb|AV947013.1|AV947013 AV947013 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCTGTAAACTAATATAAGAA EST sequence (targeted fragment marked with yellow): AGCAGGTACTTGGCCGGGGACTCCATCAGCTTCGCCGATCTCAACCACATCCCATTCACCTTCTACTTCATGACCACCCGGCACGCGTCGTTGTTTGATGACTACCCCAAGGTGAAGGCCTGGTGGGAGAGCCTCATGGCCAGGCCGGCGGTGCAGAGGGTCTGCAAGCATATGCCTAGCCAGTTTAGCTGCCTACTAACCACTACGCCCTCCATAAACTAAACTAATATGAAAGCTTTTACATCACTATAACTATTTTAGTCTAGTGATCTATAAACGCTTTTATATTAGTTAACTAATATAAGAGCTTTTAGATCACTAACTATTTTAGTGTAGTGATCTAAATACTTTTATATTAGTTTATAGAGGGAGCAGATGTTTATGAGCGCGGGTGTGTGTGTGCCGGTGATGATTCCGTTTTAGAGAAAGAGACATCGATCCGTGGGTCATCATCAGAACTAGCCCGCTTGCGCTTCTGTTCGTGCGAGCGAGCCTGATTGTGATTGATGTACCTACTTAGATTCCTTGCTTTGTGCACTAGTACCGGTAAATAAACAACTCGTCAAT | |||||||||
gi|18239239|gb|AV943442.1|AV943442 AV943442 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCTGTAAACTAATATAAGAA EST sequence (targeted fragment marked with yellow): TGATGAGGGATTTCAAACGGCTGATGCAGGATCCTCCTGCGGGCATAAGCGGCGCACCTCAGGATAACAATATAATGCTGTGGAATGCTGTAATTTTTGGTCCTGATGATACTCCCTGGGATGGTGGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAATAAGCCACCTACAGTGCGGTTTGTTTCTCGGATGTTTCATCCCAACATTTATGCGGATGGAAGCATATGTTTAGATATCCTCCAAAACCAATGGAGCCCGATATATGATGTAGCTGCTATATTGACATCCATTCAGTCACTGCTTTGCGACCCAAACCCAAATTCACCTGCCAACTCAGAAGCGGCCCGCCTATTCAGCGAGAACAAGCGGGAATACAACCGTAAAGTACGTGAGGTCGTGGAGCAAAGCTGGACTGCAGACTAAAGCCATTGCATCAAATAGTGATGACAGCTAATTGCCCATTAGCGCCTTGTGAGTCTTATGTACTGAACTGCTTGTAAGGTACTCCCTCGGTAAACTAATATAAGAGCGGTTGGGTCCAAACACTCTTATATTAGTTTACAGAGGGAGTAATTATAAATGTTACATCATGCTTGCAATCGTGTATGTTCTTGGGAGTGACATTCTTAGACGCTCAGCATGTACTCCCTCCGTTCCTAAATATAAGACCTTAAGAGA | |||||||||
gi|21163674|gb|BJ485231.1|BJ485231 BJ485231 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCTGTAAACTAATATAAGAA EST sequence (targeted fragment marked with yellow): GGTTACATTGGGAATATCTACACTTTTGATGTATGTTCCTACCTCATTAGGTTCAGCTCACCAAGCTGGGGCATTGACACTACTGTCACTGATGATACTTCTCACCCACACATTAAGAAGACCATCACCAGCTCTCTTGAAGTCACTTGCATCTGCTGTGTAGTCAACCTGATACCACGCCATGGATCAGTGAAAATGGCTATTTGATATTATTATTTTTGCCCTCCTAACGTGCTAAAGTACTCCCTCCGTAAACTAATATAAGAGCATTTAGAACACTATTTTAGTAATCTAAACACTCTTATATTAGTTTACAGAGGGAGTATTTGTTAAAAAAAGAAATCAGTTCTTGGGTAAAGGCTGCTTCATAGTTTTCTAGCGCCAAATATCACAAGCCCTTGTGAAAGTTCCTTTGACTTATTATCACAATTTTGCATGCAGTATCTCATTCTGGGGGTGCTGTCCAAAAGTGTGCTCTGATAGATCTTGTGTGTCGAACTTACTCTATGTACCGAAGTTCATCTACTATAGTACTCCCTCTGAAGTNATCTAAACACTCTTATATTTCTTTACGGNAGGGNAGTAATGTATAAG | |||||||||
gi|21165219|gb|BJ486785.1|BJ486785 BJ486785 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCTGTAAACTAATATAAGAA EST sequence (targeted fragment marked with yellow): GATCTACGAAAAAGCCTCATAATGGCGGTCCGCAGCCAGATTGGCGCGTTTGCAGCACCTGACAAGATCCATTGGGCACCAGGGCTCCCAAAGACACGGAGCGGTAAGATCATGCGGAGAATATTGCGGAAAATTGCCTCCAGGCAGCTGGATGAGCTTGGTGACACGAGCACACTTGCTGATCCTGGTGTGGTCGACCAGCTGATATCGCTTAGCGATAGTTAGCCTGTGACGATGGAGATGGCACGTTGTCACCTATACTTTTAGCACGTCTCATTTTCTTTCTTGCCTCTGGTGATAAATAGAGAGAATCAGTTTATATGTCGCATGGTCTTATGATTCCCTTGATTTATTTAGTACCATGGGGTTGGCGAAGTTGCAGCTTGCAAGTCAAGTGAGATGTATATGTAAATTGTTGGATCACAGCACAGAAAAATAGTACTCCCTCTATAAACTAATATAAGAGTGTTCAGATTACTAAAGTAGTGTTCTAAATGCTTTTATATTAGTTTACGGAGGGAGTACGTATATATAAATCAGATGTATGCAAGTATGTATTAGCTGCATTAT | |||||||||
gi|21165425|gb|BJ486992.1|BJ486992 BJ486992 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTCTGTAAACTAATATAAGAA EST sequence (targeted fragment marked with yellow): CTATTTTAGTAGTAGCTCTTTTAATGGCGATTTTTGCTGGTGTAGAACAGCGCAACTGCAAACCTGGTGACATATGCTTTGTGAAACGGAATGAGCCAGTTGGTCTGACCGAGAAGTGCTCCGTTCTTTTCTGAAATTAATGCCTGATCTAGTATGTGCCAGAAATGAGCCAGTTTAATTGGGGACATCTGAAATGAGCCAGTTCGTCTACTTGAGGTGCTAAACAGACCGGTATCTTTTATTTTGTGCGCTTACCATTTCGTAGTAGCCTGATTTTTTTTGCACTATATATGAATAAACTGATAGTTTGCAAGATCTATGTGAACATATTTGTAGATTTGAGGGGGTGTTAATTACTACATCTGTACACTAATACAAGATGTTTCTGCAGTTCAGTCTGGACTGAAAATCCTAATGTAAGACGTTTTTGCAGTTAAATTTGAACTGAAAAATGTCTTGCATTAGTTTACATAGGGAGTACTTATCAGTCGACCTAGATAAACATGT | |||||||||