miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GTACTTCCTCCGTCCCAAAAT
species: Hordeum vulgare subsp. spontaneum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|21158123|gb|BJ479645.1|BJ479645 BJ479645 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
.|||..|||||.||||| |||
TATGGGGGAGGTAGGGTATTA

EST sequence (targeted fragment marked with yellow):
TATATTTGGGAACCTATGCTACATTACAAATAATTTCCTCAATCTTTAGTCGAACCAAGTATATTTGAGAAGCTATTCTATAGAAAGTATACTAGAACCTTTAATTGTTACTCCCTTCATCCCATAATATAAGAGCGTTTACTTATAGTATTATGGGATGGAGGGGGTATTTTTGTAAGATAAGGTAGGGGGAATCATATAAAGCTGGAAATGAGCTATAAGTGATTCGTTCTTTCTTTGTTTCCAATCCTTAAAGCCAAAGGCGATTCGTTCATGATTATCGCAGAATTGTTCTAGACTTCCCGCCTGAGTTTCACCATTTGTACATTCTGGAAGTTCTTGGACCCTAAGTACAAAGGTTCGCAAAAAAACTGCCAAAAGAAACCATGAGTTTCAGGGACATACAAGTACAGGAGAGATAAGCCATGGTAACAAGTCAGGTCATGCAACGGAACATGACACCAAGGAGAGCATTCAG



gi|14526800|gb|AV834711.1|AV834711 AV834711 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves

GTACTTCCTCCGTCCCAAAAT
.||||.|||||||||||||||
TATGAGGGAGGCAGGGTTTTA

EST sequence (targeted fragment marked with yellow):
GNAATTCGGCACGAGGGTTTATTGTATACTCCCTCCCGTGCCCAAAATAAGTGAGTCACTTATTTTGGGACGGAGGGAGTATTAGATTGTAAAAAACCTCTAAGTTAGTAAACTAGATCTGTCCAGTTTTAGGAAATTTGTAAATACAGTGTGCCTTGGTAAAAAAACACACTTCTTTAAAAAACTGGAAATCATATTCTTATCACCAATCTTTTTTCATTTATATTCATATATTNNTCTGCATATCTTACTTGCTCTCTCAGCTACAGGGTTATTCATGTTTCTTCTACTCGCGTTTGTTTCTGACGGCAACAGAGGCAAAGGAACATACATACTCAGGGTAGTCCCGACTGATGCTTTTCATGCAGATAAAACAGTACGGATAGCTGACCAGAAGTGAACATGGAACCTCTTGAATTATTGCGGAAAGGTGTGATTTGGGAGAATATATGTTGATCAGAATAGGTTTTGTGAACGTCTGTAGGTCATGCACGTATGCAGAGAATTGATTC



gi|21160752|gb|BJ482291.1|BJ482291 BJ482291 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
||||.||||||| || ||||
GATGAGGGAGGCAAGGATTTA

EST sequence (targeted fragment marked with yellow):
CCCTCCGTTCCTAAATATAAGTCTTTTTAGGAGGTTCCACTAGNATATATATATAGACATACTTTACAGTGTAGATTCATTCATTTTGCTTCGTATGTACTCCCTCTGTTCCTAAATATAAGTCCTTTAAAGATTCCACCAGGGNACTACATACGGAGCAAAATGAGTCAATCTACACTCTAAAGTATATCTTTGTACATCCGTATGTAGTTTGTAGTGTAATGTCTAAAAAGACATATATTTAGGAACGGAGGGAGTAGTATTTAGGAACGGAGGGAGTAGTTGCTAAAGGTCGTTTGCTATTTATAAGAGTTTTGCAGGTGGGCGCCTGTCAGACCGCTGTTAAAATCTAAAATGTGGAATTTTGTGATACCTTGCCTCCCTGAATGTGGAATTTTGTGAAACTATGTCTTAGTGTGGAGTTATGTGATAACTTATACAACAAATGTAGAGTTTTGTGAAATTGTACACCTTATAGTGTGGTACAAATTCAAAATTAGCAGCATTCTTTATTTGATTGTGCCAGCATCTCATCTCCGTACTGCCTAAAACATGTTTGTTTTGTCTTGATGCTTTAAGGGTCATGCTTGCAACCTCCATATTCTGCACATGCACTT



gi|21158426|gb|BJ479954.1|BJ479954 BJ479954 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
.||||.||||||| ||||||
TATGAGGGAGGCAAGGTTTTC

EST sequence (targeted fragment marked with yellow):
AGGGGAGCTCTCGTTGCCTGATCGCTGACCCATCGTCCAATTGACCGCAGCGGCAGTTCCACACCGTCAAGGTGCTGCCAGCCACCGCCGTTTTATTGCCTTTGATTCGGCTGTGCGCGTGGGCTGGGAACCGTGCTCTGTTGTCTGATGCGTCGTTGGAGCGGGAGGTTTGGTCGGTCGAGGCCAGGTATGAGCAGCTCCTGAGCTGGCTGGATGGATGGATGCAGGTCATGTGTCGTGAACCAACACCAGGACACCTCTTTTGGAACGGAGGGAGTATATTTTGGAACGGAGGGAGTATGTATGTACGTATGGATATCATGGTCATGTTGCTTGGGGGTTCAACCTCTTTTTTGGATAAAGAAGAGGGGCGATGCCCATAATTATGACTGGCTGAAATAATCATGTCTTTGAGACATCAAGACAGCCGTGGCAAGGTGGGACTAAATAGTGTCTGAAAGTGGGTATCTGCGTTGGAGTTG



gi|21157027|gb|BJ478543.1|BJ478543 BJ478543 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
|||||.|||||| ||||||
CATGAGGGAGGCTAGGTTTTT

EST sequence (targeted fragment marked with yellow):
AAACCTCGATGTGGAAGAAGCCAAGGCCTTCGATGCCATGGCCATACATCATGAGCTCGTTCGGTGTAAACCTCGATGTGGAAGAAGCCAAGGCCTTCGATGCCATGGCCATACATCATGAGCTCGTTCGGTGTAAACCTCGATGTGGAAGAAGCCAAGGCCTTCGATGCCATGGCCGTACATCATGAGCTCGCCCGTCACCGGACGATTCGGACAGAGAAGCGTGGGATGGCCGGTGTCCTTGCAGAGGTAGCAGCACGACGGGTTGGAGCAGGAAACTTGTGCATGGCCAAAGAGACCGCAGTCGAAGCACTGGACACGGTCCGCCACGGGGACACACTGGCCCGAAGCCGGAGCTCATTTTTTTCCTCCTACCTTCCTTGTACTGTCTAGTTCCAGTGTTCTTTAGTTCAAAAAAAGTGTTGTGACTTCAGTTCACGTTAAACTTAAGCTGAACTAAATGCCACCACTTTTTTTGGATCGGAGGGAGTACCTTTATCTGGTGATATTTGGACCAATTTGAGATGTTATAAATTATGACTTTGCATGAAAATTTAGTCT



gi|18237583|gb|AV941786.1|AV941786 AV941786 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
.|||| |||||.| |||||||
TATGATGGAGGTATGGTTTTA

EST sequence (targeted fragment marked with yellow):
GGTTACTGGTTTTCTTGGAGGTGTGAATTGGGCTTTACTGGTCGCACGAGTCTGCCAGCTCTATCCTAATGCCGTGCCAAGTATGCTGGTCTCGAGATTTTTCAGGGTTTTTACGCAGTGGCGCTGGCCAACTCCAGTGATGCTTTGTGCCATTGAGGAGGAGGAACTTGGCTTTCCTGTGTGGGATCCCCGCAAAAATCCTCGTGACAGAACTCATCATATGCCCATTATCACCCCAGCATATCCTTGCATGAACTCCAGCTATAATGTTTCGACGAGCACACTGAGGGTTATGATAGAACAATTCCAGTTTGGCAATAAAATATGCCAGGTATTTTCTCTGGCATCATAATTACTACTCTGTATCAAAATGCCTTATATTTTGGTATGGAGGTAGTATTCAGCAACTGCTTTTTTTGACTGTTCCCAACTCTTTAATGCAGGAAATTGAGATGAATAAGGCTAGTTGGTCTGCCCTTTTTGAGCCTTTCAATTTTTTTGAGGCGTATAAAAATTATTTGCAAGTTGACATCATCGCTGAGGATGATGAAGATCTCAGACTTTGGAAGGGATGGGTGGAGTCTCGATTGAGGCAACTGACTTTAAA



gi|21160581|gb|BJ482119.1|BJ482119 BJ482119 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
.||||.||||||||| ||||
TATGAGGGAGGCAGGCCTTTA

EST sequence (targeted fragment marked with yellow):
ATTCGGCACGAGGTGTTTTTCTCCTCTGTGAAGAGAAGCCCAACCTGATAACTATCAAATGTAATATCTTCCACTTGGAATTCAGGCAGAGGTAAGCCTACTGCGACATTTATGTTACTAAAAACACATAATTGAACGCATTGACACTAATACGCCCTCCGTCCGAAAATACTTGTCCTAGAGATGAATGTATCTAGACTTATTTTAGTTATAGATACATTCATTATGTTTATTTTTAAGACAAGTATTTCCGGACGGAGGGAGTATGATTTTTTGGGTCTATGTGCCATATGCCACCTGCAGGATCTATCCACACCATGGCACAAAGCTGGTACAACCTTGAGATCTTTCTCTATCTTTCCTTTTCTCCTTCCGAGAAACGTAGTCTTGAGATCTTTTCAGATAGTGGACACATGCAAATAGTTACATATACAAGTCCAAGTTCTAGCAAAGTTGAAACACCAGTTTGTGGTTTTTGTGCCAAAACCAAAGGTGTCATCACAAACAGATAATAATAACAATATATATTAGGTAAGCAAGTTGCACAAGTGGGCCTTTTTATATTCCCACCCAGCAGATTGGTTTCTTCCCTAGCCAATCAAGCTTGACAGTGTAGCTTGCCTATCAGAACACTTTGGATTGCATATTTACATTATTTCTTATACCACTTGATCTTTTAATTTTCTCCTGATGTTACCTGTAATATCTTTG



gi|18239961|gb|AV944164.1|AV944164 AV944164 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
.||||.|||||||||||||||
TATGAGGGAGGCAGGGTTTTA

EST sequence (targeted fragment marked with yellow):
GCGTTCTAAGTTCCTGGTATACAAGCGCTGAGATTCTCAACTTTTGTGCTATTGTAATACTGATATTACCTTCTGCTGGAAAGTATTATTAAGTCAATGTTCTGGGAGAAGACGTTGAGTCAACTAGTTTGGTAATTTACCTGGCTAAGATGCAAAAGAGGGCATTTTGGATGCCTATAGTGGAAAAAGAACTGAGAAAAATCGTCTCGACGGGTTGTGTCAAGCAAGGAAGGTGTGACAACAAACACGCATTTTGATATTCTGGCAGTCTTTTGTAGTGTAATTTAGTACTTCCTCTGTCCCAAAATAACTGTCTCAAGCTTAATACAAATTTGTATTAAAGCTAGTATAAATTAAGACACTTATTTTGGGACGGAGGGAGTATCTAAGAGTATATTCTCGGTCCCTAGTAGTGATGTTCTAGATAGGACCAGTGGGGAAGCTACAAGATGTAATTTCCACTAGTGGGGAAGCTAGGAGATGTTCTAGATAGGATTTGGGGCTAACTACGTTTTTTTAAGGTGTAATTTCCACTAGTGAGCAATGAGAAAGACTAGATCACTGAAGGATGTATGGATTCGNATTGGGACCGAATAGNATGTAT



gi|21158426|gb|BJ479954.1|BJ479954 BJ479954 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
.||||.||||||| |||||||
TATGAGGGAGGCAAGGTTTTA

EST sequence (targeted fragment marked with yellow):
AGGGGAGCTCTCGTTGCCTGATCGCTGACCCATCGTCCAATTGACCGCAGCGGCAGTTCCACACCGTCAAGGTGCTGCCAGCCACCGCCGTTTTATTGCCTTTGATTCGGCTGTGCGCGTGGGCTGGGAACCGTGCTCTGTTGTCTGATGCGTCGTTGGAGCGGGAGGTTTGGTCGGTCGAGGCCAGGTATGAGCAGCTCCTGAGCTGGCTGGATGGATGGATGCAGGTCATGTGTCGTGAACCAACACCAGGACACCTCTTTTGGAACGGAGGGAGTATATTTTGGAACGGAGGGAGTATGTATGTACGTATGGATATCATGGTCATGTTGCTTGGGGGTTCAACCTCTTTTTTGGATAAAGAAGAGGGGCGATGCCCATAATTATGACTGGCTGAAATAATCATGTCTTTGAGACATCAAGACAGCCGTGGCAAGGTGGGACTAAATAGTGTCTGAAAGTGGGTATCTGCGTTGGAGTTG



gi|21160867|gb|BJ482407.1|BJ482407 BJ482407 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
||||.|||||||| ||||||
GATGAGGGAGGCAGAGTTTTA

EST sequence (targeted fragment marked with yellow):
CATGAACTAATGTTGTGTGGTATTATTTAGGGCTTGTGTCTTCAAAAANAAAAGAAAAAAGTTAGGGGTTATGTTGGATTGTAGCACAATTTTGTCTATGAGACTGTCATTTTTCAAGTACTTGAGCTGTAGGAATCTCCATGGCATGTATTCCCTCCGTCCCAAATAAGTGACTCAACTTTATACTAAACTTAATATAAAATTAAATCATTTATTTTGAGACGGAGGGAGTAGTAGTGAGCTAAACGCTCTTATATTTCTTTAT



gi|21162646|gb|BJ484198.1|BJ484198 BJ484198 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
||||.|||||||||||||||
AATGAGGGAGGCAGGGTTTTA

EST sequence (targeted fragment marked with yellow):
TAGATTTGTTTACATGTAAGTGTATCTAGTCACGTTTTGGTATTTAGATACATCAACTTTTAGACAAACCTAAGACAAAAATTTTGGGACGGAGGGAGTAATATGATTGAAATTGTTGTTACATTGCCCTGCATGGATTTGGTGGCAAGACTAACTAAAATGCGGTATTTATTTTCTATGTCCTTGCATGAAGTTATCTCGATCTCAACATTCATGTCTCAGAATGCCCGAGGATAGTGCCGAGAAGACCAACATGGTGCGGGAGCCATCCAAGGATTTTAAGAACCTGAACTTGAAGTTGCTCCAGATGTCCGGGTTCGAGGAGGAAGACAATGTGACAACCTATATAAGGCTTGTCATGGAACGAGCTGTGGGGTTAAAGAAAATCGAGCTGCAAGGTTACCGCCCATTCTGGGCCTGCAATGCCACCGACGCTGATAGAAAATCCCAGGTGGATGAAGCTAGCAGGCGTCGGATTAAGGAGCTGCTCGCGAATGGATCCTCCTCATCTGTGGAGATAGTAATTTGTTGACAGGTATGGTCAAGGAATGTAAGTTTCAGAACGCTCGCAGCTGCTAGATTAATGACTTTGCACAGTCAATTGTAATTTCAGTTTCTAGTTATTGATAGCCCCAGAGTACTCAATTGCTATGGACCTCATACTGTAGCTAGATTATGTGTGTACT



gi|21158003|gb|BJ479525.1|BJ479525 BJ479525 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
|||||.||||||||| ||||
CATGAGGGAGGCAGGCCTTTA

EST sequence (targeted fragment marked with yellow):
AATGACTGGTCTGTATGTTTACATCCTACGTATTCGTCTCCACTGTCTGTATGCAAGTCCTTTTGTAATACTCCCTCTGTTCATAAATACTTGTCCTAGAAATAGATGTATCTAGATTTATTTTAGTTATGGAGATACGTCCATTTTGTACATTTCTAGAACAAACATTTCTAGAACAAGTATTTCCGGACGGAGGGAGTACTATATAAGCATCGACGACAATCAGCTCTCCATCTCAACAACAATCTTACCAGTGGCATGGCCATCGATACTGCTTTGCCACGCCTTGCCTGCGTCGCTCAAGGGGAACCTCGAGTCGATCACCGTCTTCAGCTTGCCTTCCTTGAGCAGCCCGACCAAGAACTCCAGGTCCGCCTTGTTGGGCGACAGGAGCAGGGGCACGAGGCGCTTCTTGGAGAACGTCACCCAGTGCAGCGCAGATGTGAGGATGGCCGAGAAATTGGGGGTGATGTCGATAACTCTCCCGGCGTCAGTCAGCAATGGCTGGAAAGACGACCAGCTGACACCGACGGTGCAGTGAACCACGCCGTCGTAC



gi|14526867|gb|AV834778.1|AV834778 AV834778 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves

GTACTTCCTCCGTCCCAAAAT
||||.||||||| || ||||
GATGAGGGAGGCAAGGATTTA

EST sequence (targeted fragment marked with yellow):
GCGACAAGTAATTCCAGACGGAGGGAGTATTTAGGAACGGAGGGAGTAGATTGTACGAATATTTCATATCGCTCATTGATTTGAAATCTTCGTACTTCTAATGCTGGAAATATCATGGGAGAGTATCACGGCTTCACACTAGTTATCAGTTNCACTATCTAAATCAACATGGAAAGGCCCATCAATATTCCTTGTCATACCATGATTGCTAGATNGTNTCATGGAAAAGGATTTCATATTAGCATATCGCTCATTGATTTGAAATCTTCGNACTTCTAATGCTGGAAATTTCATG



gi|21164539|gb|BJ486097.1|BJ486097 BJ486097 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
||||.||||||||||| ||
GATGAGGGAGGCAGGGTATTT

EST sequence (targeted fragment marked with yellow):
GAGAATATTGGTTCAGAGATTAAGAACATCAAAGAATTGGTCTGGGGACTGGATGAGAAGATGGATTCAATGGAAGCCAAACAGAATTTTTCATGCGCTGGTGTGATGTACCTCTGCCAATTCATAGAGCAAAGTGGTGGGAAGCTCCCTGAACGCCTGGAAGGCATCAAACCATCAGCGAAGCGATTTTCAACAATTGGCATACAGGGGTTGCAACTAGCCATAGAAACAGGGGATTATCGTGAATTCAGCAATGCTGATTCCACTGACAAGATAAGCAGGTCGAACTCGTTGAAGTCTGCCAACTAATTTTCTTTGGGGTTGGCGAGACGAATATCCAGATTTGTTGCTCAGTGGAACATTGTAAAGGGAGATCCTTGCTGGTTAAAATGTGAAGTGTCCCAGCCTTTTTGTTATTTGCTTGCAGGAAGTGCTGTTTTTTAAACTTGAAAACGTGTGCCAAGTGCTCCCCCCGTCCTGTAATATAAGAGAGCTTCTGACACTAACGCTCTTATTTTATGGGACTTTTATGGGACGGAGGGAGTAGTATCTACTAGGGAATCTAGACCAGAGAGTATTCTGGCATCACTTGTGCCTTGCATTTTTAGGCAATACCTAGCTATAAATAAATGTAACACTTGAGATTCGTTGAACCATTTCATTTATGGGTCTGTAAATCTTGCTGTTTGTGCATTCTGTTTTGAGGATTGCTTCATACAATAAAATGCTGTCGTGTCCCACNT



gi|18238941|gb|AV943144.1|AV943144 AV943144 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
.||||| ||||||| ||||||
TATGAAAGAGGCAGAGTTTTA

EST sequence (targeted fragment marked with yellow):
ATGAGCAAGGAGCGATGCATCTCTGGGAACAGAGTGGTTCACCGCTCATCCCTCTGGTAGAGTTCTCGGACCCCCATGTCACCAAGAAGTACGGCCTGTCACCGGACAAGGAGACGCTGGAGATCCTGGCCCAAGTGGCGCATCAGAGCGGGGTTGAGGTCTTTGTGAAGATATTCTATGGCGACCCGACCAAGAAGCTGTGCGAGGCAGTTGACCTGGTTCCTCTCGGCTGCCTGGTCATCGGAAGCAGAGGTCTGAGCACGCTCAAGAGGGCTCTGATGGGGAGCGTGAGCACCTACGTTGTTAACCACGCGGCCTGCCCGGTCACGGTCGTGAAGGAGAACATGTAGCTGCAGCTTGCTACCGATGTATGATGATACATACAAGAAGATAATACCGTCTGCAAGAACAGTAGTAGTAGCAAAGCAACGTGTAACCAGTAACAATAACATGACAAAAAAAGTGTGCTCGGACGGTGGTGTGTTAAGGGCCGAGTGTGCTTTGTACTTCGCTTCTAGTAACAGATACTCCCTCCGTCCTAAAATTCTTGTCTTAGATTTGTCTAGATATGAATATCAAGTATTTTGATACATTCATTTCTAGATAAACCTAATACAAGAATTTTGAGACGGAGAAAGTATTATATTTTATAGCAGTACCG



gi|21164355|gb|BJ485913.1|BJ485913 BJ485913 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
||| ||||||.||||| |||
GATGTAGGAGGTAGGGTATTA

EST sequence (targeted fragment marked with yellow):
GGCCACGTCAAGACAGGTGGCCCAATGATGGCCGCGGAGGATTTCTCGTTCTACACGCAGAGATTCCCAGGGGCATTTTTCATGATAGGAACCCGCGACGAGGCCATGGCAACCGCGGTGCATCCACTCCACTCCCCCAACTTTGTGATCGATGAGGGTGTGCTCCCGGTGGGAGCTGCCTTCCATGCTGCTGTGGCGATGGAGTACTTGAACAAGCACGGAACCGTGGCAAAATAGATTACTGATGTCCGTTCGAAATTTAGGATGTTGCAGTGGGCAGCCTGCCGATTACTGTTACTAGGATGGGTGTGTGCATTCATAGGTACTGAGTCGTAACACTCCCTCCGTCCCATAATGTAACAGCGTTTTTGACACTATACTAGTATCAAAATCGTTTTTGTATTATGGGATGGAGGATGTAGTTGTTATGNATGTG



gi|18241224|gb|AV945427.1|AV945427 AV945427 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
|||||.|||||||||||||||
CATGAGGGAGGCAGGGTTTTA

EST sequence (targeted fragment marked with yellow):
AAGCTGCAGTTCAGGTGGGCGCTTNTGCTCTCCCTCCACACGCCCTACATCCACGTACACTCTTCTATCGGTACCTACACATACATGCGCCAGGTGGCTGGATCTCGCAGGGGCGATGTTTTTACTCACATCTCATGATGCATGTCAAGCTATTTGGAGCTTGCTTGCATCATTAAATGAGCATGCACTAATTGGACACAAATAAAGGAGATGAGTACTAAATGAACTTGTACTAAACAGAAACAATTTATTTATGGTGTACTCCCTCCGTCCCAAAATAATTGTCTCAAGCTAAGTACAACTTTATACTAGAGGTAATACAAAGTTGAGACATTTATTTTGGGACGGAGGGAGTACATAATTATCAAGTTGAAAGCTGATCTATAAATAGCAAGTATTGTCGTGTGTAAACCTTTTACTTGGTTCGTCTTTTACAGGAGCTCCATGGCTAAGAAAGTTAAAAGTGCGAAAGTGTGAACCCGTGAAACCCTACTCAGCAAAGAGTTGTTTGTTCTATTTGAGTGTAACGGATAGTAAATATTGTAAGTTGGCATATCTGGGGTTGGGGTTGTAATAGACATCAACAATGAATAGACNATTTAGT



gi|21164188|gb|BJ485746.1|BJ485746 BJ485746 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
|||||||||||||||||||||
CATGAAGGAGGCAGGGTTTTA

EST sequence (targeted fragment marked with yellow):
CAATTCATGAAAAATGCTTGAAAGAAATGAAGGAGCATTGCCAATTCGCATGCCCGCTCTGCTCCAAGTCGGTGTGTGACATGTCAAAGGCATGGGAAAGACTGGATGCAGAACTAGCGACTCTGTCAAACTCCTTCGACGATAAGATGGTTCGCATATTGTGCAATGATTGCGGGGCGGTATCAGAGGTGCAGTTCCACTTAATTGCACATAAGTGCCATAGTTGCAAGTCATACAACACCCGGCAAATTTGAAGTAGTGAGCCATGGAGGGACTCTACGTTCTTCCTAGAAGTTGGCGAGCGCGCTCCAGCAGTGGAAATCGATTCATCTACGTGATGTTTTCCACGAAGGCAGATCACTGGACAGTTTATCTGCATCCTCCGCAGTTAGCTGCTGCCTTTTGTTTGTCCTTCATTTGTTTCTGCATGGTCTCCTTTTGTTCAGTGTGTAACAGCTTCCGCGTGACCGATCAAGCCTTGCATATTTTAGCACAACGCGGCATCTGGTAGAATTGTGTTCTACTCCCTCCATCTCAAAGTAAGTGACTCAAAAATGACTCTTCTCTTGAGTCATTTTTGAGTCACTTATTTTGGGACGGAGGAAGTACTCGATTGGTATCATTTCCAGCATTGGTCAGGACTGCAACCTATAGGATCACCACTCTGGCGAGTCNTGCTGCGTGCATGCAGCAGGCTGTGGGCATAGGGTTTAGGTTGCAAAATTTCTNATTCTCAATTTAAAT



gi|14527897|gb|AV835808.1|AV835808 AV835808 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves

GTACTTCCTCCGTCCCAAAAT
|||||.|||||||||||||||
CATGAGGGAGGCAGGGTTTTA

EST sequence (targeted fragment marked with yellow):
TTCAATAGCAGNNTCAAATTAGNATGGTCATGTACATATTACATGGTACTCCCTCCGTCTTAAAATAATTGTCTCAACTTTGTACTAGCTTTAGTATAAAATTGTACTAAGGTTAAGACACTTATTTTGGGACGGAGGGAGTACATATAAGGCTCAACCAGNATTAATTTAGGGGAGGGGGGAGAGGACTGTACAATTTCTGACAAAATTGGAGATGAACATATCTCCTGATCACAAACTCACCCTGACGTCCGTCAGAAAGATGAAAACCTCAATGCTGGTAAGGCCTCAAAGTTTCTCTAGTTCACGTTCCATCGAAGCGAAGTCAAAACCTTCCCAATCAAGTCCTACATCCAACTCAAACATTGGCAACGGTAGATGGCTGATGTCTGCCAGCCCGATGTAGTCGTCGCCAGGCGGTTTGCCTGTTGTGTCAACGAAGTCATTGACATGAAACATATCTGCCAGCCTTGAAATATCATCCAGTGAGAGTTTGTCAGTTGTGCAAACATAGTCACTGATAGGAAGCTCATTTATCTGGCTGTGGAATGCATCCACTGGAATTTCTTCATCGCTAGGTGTCGATGAGCAGTGCACTAAGCTTTCATCAACATTCATCCGGCCAAGGAATGCATCTACCTCAATTTCTTTACCTGGCAGTTCTGGTGAGCAATGCAGTAAGCTCTCATCAGCAGTGTCAGGGTCTATCTCCATTGGCGCTACCTTG



gi|24970290|gb|BJ551839.1|BJ551839 BJ551839 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
.||||| ||||||| ||||||
TATGAAAGAGGCAGAGTTTTA

EST sequence (targeted fragment marked with yellow):
CGGACCCCCATGTCACCAAGAAGTACGGCCTGTCACCGGACAAGGAGACGCTGGAGATCCTGGCCCAAGTGGCGCATCAGAGCGGGGTTGAGGTCTTTGTGAAGATATTCTATGGCGACCCGACCAAGAAGCTGTGCGAGGCAGTTGACCTGGTTCCTCTCGGCTGCCTGGTCATCGGAAGCAGAGGTCTGAGCACGCTCAAGAGGGCTCTGATGGGGAGCGTGAGCACCTACGTTGTTAACCACGCGGCCTGCCCGGTCACGGTCGTGAAGGAGAACATGTAGCTGCAGCTTGCTACCGATGTATGATGATACATACAAGAAGATAATACCGTCTGCAAGAACAGTAGTAGTAGCAAAGCAACGTGTAACCAGTAACAATAACATGACAAAAAAAGTGTGCTCGGACGGTGGTGTGTTAAGGGCCGAGTGTGCTTTGTACTTCGCTTCTAGTAACAGATACTCCCTCCGTCCTAAAATTCTTGTCTTAGATTTGTCTAGATATGAATATCAAGTATTTTGATACATTCATTTCTAGATAAACCTAATACAAGAATTTTGAGACGGAGAAAGTATTATATTTTATAGCAGTACCGG



gi|14528005|gb|AV835916.1|AV835916 AV835916 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves

GTACTTCCTCCGTCCCAAAAT
|||||.||||||| || ||||
CATGAGGGAGGCAAGGATTTA

EST sequence (targeted fragment marked with yellow):
ATTTAGGAACGGAGGGAGTACATCCGTATGTGGTTCATAGTACAATCTCTTAAAAGACATATATTTAGAAACGGAGGAAGTAAGAAATAAGAACTCTGAAAGGTAAAGCTTGCTTCTGGTTGTAAGTTCATCTACAAACAATGGGCGGAAGTAAAATCACAGTTCATCATAGATGGGAGGAGCATTTGTTGGGGCAGGCCCCTATTGCACTTTACCCAAGATATCTNCAGCTGATACTGAGCCTGATCCTGATAGCAT



gi|21161007|gb|BJ482549.1|BJ482549 BJ482549 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

GTACTTCCTCCGTCCCAAAAT
.||||.||||||||||| |||
TATGAGGGAGGCAGGGTATTA

EST sequence (targeted fragment marked with yellow):
ATCTAGGCATGTGATCTGCAGGTACTCCCTCCGTCCCATAATATAAGGCGTTATTACATCCAATATACTCACATATTATGGGACGGAGGGAGTATCTAGTTGCTTCCTTTTGAATTAAAACTTTTTAACAACTAGAGCCGCTCTCTTCATCTCCTGAATACTCTTATGGGTGCATCATACCTGAAACCTCTCGTCTTTCAGGTTTTCCAGTTGCAAGTCGATAATGGTATCCCGATAAAGAGCTGGTTTGATGACCCCGCGGACCAGGAATTGGTTGAGTTACTCCCGTTCCTCGAGACCCTTGTTGATGCAGAGGACGTAAGGCCACTAATCTCAAAGACTTTTCACGGCACAATCCAGCAGGATTAGACTTAAGATGCATCCTTATCATGCACTGAGCCTGAGCTTGCCAGTTCCAGCGAGCTCCATCTTGGGAAATTAGGTATTAGGATCAGCATTCACCATTTATGTTATGTTGGCTGTTACAAATAGCAAGCATAAACTGCATGTCGCCATGGCTTGTATATGTAGTATTGTTCGGTTTTCTGTGTCGCAGGTCTTTGTACATAAACTATAGTAT