mature miRNA: TACTCCCTCCGTCCCATAATA species: Hordeum vulgare subsp. spontaneum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|14526800|gb|AV834711.1|AV834711 AV834711 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): GNAATTCGGCACGAGGGTTTATTGTATACTCCCTCCCGTGCCCAAAATAAGTGAGTCACTTATTTTGGGACGGAGGGAGTATTAGATTGTAAAAAACCTCTAAGTTAGTAAACTAGATCTGTCCAGTTTTAGGAAATTTGTAAATACAGTGTGCCTTGGTAAAAAAACACACTTCTTTAAAAAACTGGAAATCATATTCTTATCACCAATCTTTTTTCATTTATATTCATATATTNNTCTGCATATCTTACTTGCTCTCTCAGCTACAGGGTTATTCATGTTTCTTCTACTCGCGTTTGTTTCTGACGGCAACAGAGGCAAAGGAACATACATACTCAGGGTAGTCCCGACTGATGCTTTTCATGCAGATAAAACAGTACGGATAGCTGACCAGAAGTGAACATGGAACCTCTTGAATTATTGCGGAAAGGTGTGATTTGGGAGAATATATGTTGATCAGAATAGGTTTTGTGAACGTCTGTAGGTCATGCACGTATGCAGAGAATTGATTC | |||||||||
gi|21162646|gb|BJ484198.1|BJ484198 BJ484198 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): TAGATTTGTTTACATGTAAGTGTATCTAGTCACGTTTTGGTATTTAGATACATCAACTTTTAGACAAACCTAAGACAAAAATTTTGGGACGGAGGGAGTAATATGATTGAAATTGTTGTTACATTGCCCTGCATGGATTTGGTGGCAAGACTAACTAAAATGCGGTATTTATTTTCTATGTCCTTGCATGAAGTTATCTCGATCTCAACATTCATGTCTCAGAATGCCCGAGGATAGTGCCGAGAAGACCAACATGGTGCGGGAGCCATCCAAGGATTTTAAGAACCTGAACTTGAAGTTGCTCCAGATGTCCGGGTTCGAGGAGGAAGACAATGTGACAACCTATATAAGGCTTGTCATGGAACGAGCTGTGGGGTTAAAGAAAATCGAGCTGCAAGGTTACCGCCCATTCTGGGCCTGCAATGCCACCGACGCTGATAGAAAATCCCAGGTGGATGAAGCTAGCAGGCGTCGGATTAAGGAGCTGCTCGCGAATGGATCCTCCTCATCTGTGGAGATAGTAATTTGTTGACAGGTATGGTCAAGGAATGTAAGTTTCAGAACGCTCGCAGCTGCTAGATTAATGACTTTGCACAGTCAATTGTAATTTCAGTTTCTAGTTATTGATAGCCCCAGAGTACTCAATTGCTATGGACCTCATACTGTAGCTAGATTATGTGTGTACT | |||||||||
gi|21160867|gb|BJ482407.1|BJ482407 BJ482407 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): CATGAACTAATGTTGTGTGGTATTATTTAGGGCTTGTGTCTTCAAAAANAAAAGAAAAAAGTTAGGGGTTATGTTGGATTGTAGCACAATTTTGTCTATGAGACTGTCATTTTTCAAGTACTTGAGCTGTAGGAATCTCCATGGCATGTATTCCCTCCGTCCCAAATAAGTGACTCAACTTTATACTAAACTTAATATAAAATTAAATCATTTATTTTGAGACGGAGGGAGTAGTAGTGAGCTAAACGCTCTTATATTTCTTTAT | |||||||||
gi|14527897|gb|AV835808.1|AV835808 AV835808 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): TTCAATAGCAGNNTCAAATTAGNATGGTCATGTACATATTACATGGTACTCCCTCCGTCTTAAAATAATTGTCTCAACTTTGTACTAGCTTTAGTATAAAATTGTACTAAGGTTAAGACACTTATTTTGGGACGGAGGGAGTACATATAAGGCTCAACCAGNATTAATTTAGGGGAGGGGGGAGAGGACTGTACAATTTCTGACAAAATTGGAGATGAACATATCTCCTGATCACAAACTCACCCTGACGTCCGTCAGAAAGATGAAAACCTCAATGCTGGTAAGGCCTCAAAGTTTCTCTAGTTCACGTTCCATCGAAGCGAAGTCAAAACCTTCCCAATCAAGTCCTACATCCAACTCAAACATTGGCAACGGTAGATGGCTGATGTCTGCCAGCCCGATGTAGTCGTCGCCAGGCGGTTTGCCTGTTGTGTCAACGAAGTCATTGACATGAAACATATCTGCCAGCCTTGAAATATCATCCAGTGAGAGTTTGTCAGTTGTGCAAACATAGTCACTGATAGGAAGCTCATTTATCTGGCTGTGGAATGCATCCACTGGAATTTCTTCATCGCTAGGTGTCGATGAGCAGTGCACTAAGCTTTCATCAACATTCATCCGGCCAAGGAATGCATCTACCTCAATTTCTTTACCTGGCAGTTCTGGTGAGCAATGCAGTAAGCTCTCATCAGCAGTGTCAGGGTCTATCTCCATTGGCGCTACCTTG | |||||||||
gi|18239961|gb|AV944164.1|AV944164 AV944164 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): GCGTTCTAAGTTCCTGGTATACAAGCGCTGAGATTCTCAACTTTTGTGCTATTGTAATACTGATATTACCTTCTGCTGGAAAGTATTATTAAGTCAATGTTCTGGGAGAAGACGTTGAGTCAACTAGTTTGGTAATTTACCTGGCTAAGATGCAAAAGAGGGCATTTTGGATGCCTATAGTGGAAAAAGAACTGAGAAAAATCGTCTCGACGGGTTGTGTCAAGCAAGGAAGGTGTGACAACAAACACGCATTTTGATATTCTGGCAGTCTTTTGTAGTGTAATTTAGTACTTCCTCTGTCCCAAAATAACTGTCTCAAGCTTAATACAAATTTGTATTAAAGCTAGTATAAATTAAGACACTTATTTTGGGACGGAGGGAGTATCTAAGAGTATATTCTCGGTCCCTAGTAGTGATGTTCTAGATAGGACCAGTGGGGAAGCTACAAGATGTAATTTCCACTAGTGGGGAAGCTAGGAGATGTTCTAGATAGGATTTGGGGCTAACTACGTTTTTTTAAGGTGTAATTTCCACTAGTGAGCAATGAGAAAGACTAGATCACTGAAGGATGTATGGATTCGNATTGGGACCGAATAGNATGTAT | |||||||||
gi|14527772|gb|AV835683.1|AV835683 AV835683 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): ACTTAATATGGATCGGAGGGAGTAACAAAAATAGATTTACAGGGNAGAATTCCGATATTTACTTACACGAAGTTACGCTCGGACTTGAGCTCTGCTGGCGCTGGTAAAAGAGGAAGAAAAAAGACCAGAAAAGCTACACCAAAATTGGGCCATAAGAGCTGAAACGCACGTCCCAAAAAAAGTTACAGAAAGAACGAAGAACAGCTGCACAAATTACTGCACGGGCGACTTGTATCAACAGACAGTCCGAACAACAGTCGGGCGGTCGCCGACCGATGCTCCAAGATCACCCTCTAGCTCTTCAAGTCCGCCAGCGCGGTCTTGGTGGCGGCGGAAATCACAGCGTCCGAAGCGTTTGGCAGGTAGTAGTATTTCCCTTGGGCAACCCTTGCGATTTCCTTGGCGAATCCCGTAGATACAAACTTGTTCTCGGTATCGATGACA | |||||||||
gi|21160581|gb|BJ482119.1|BJ482119 BJ482119 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): ATTCGGCACGAGGTGTTTTTCTCCTCTGTGAAGAGAAGCCCAACCTGATAACTATCAAATGTAATATCTTCCACTTGGAATTCAGGCAGAGGTAAGCCTACTGCGACATTTATGTTACTAAAAACACATAATTGAACGCATTGACACTAATACGCCCTCCGTCCGAAAATACTTGTCCTAGAGATGAATGTATCTAGACTTATTTTAGTTATAGATACATTCATTATGTTTATTTTTAAGACAAGTATTTCCGGACGGAGGGAGTATGATTTTTTGGGTCTATGTGCCATATGCCACCTGCAGGATCTATCCACACCATGGCACAAAGCTGGTACAACCTTGAGATCTTTCTCTATCTTTCCTTTTCTCCTTCCGAGAAACGTAGTCTTGAGATCTTTTCAGATAGTGGACACATGCAAATAGTTACATATACAAGTCCAAGTTCTAGCAAAGTTGAAACACCAGTTTGTGGTTTTTGTGCCAAAACCAAAGGTGTCATCACAAACAGATAATAATAACAATATATATTAGGTAAGCAAGTTGCACAAGTGGGCCTTTTTATATTCCCACCCAGCAGATTGGTTTCTTCCCTAGCCAATCAAGCTTGACAGTGTAGCTTGCCTATCAGAACACTTTGGATTGCATATTTACATTATTTCTTATACCACTTGATCTTTTAATTTTCTCCTGATGTTACCTGTAATATCTTTG | |||||||||
gi|21161408|gb|BJ482953.1|BJ482953 BJ482953 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): TATGTTAAGGAACGGAGGGAGTACATAGCAATGCATATACTCTTAATGTGTTGACGAAGTCAATTTTTAGTACTGTATCTTAGGGTTTTGTATGGTTTATAGAGGTCAGCATGTTTGGCAGTTGATGTTCTGAGTTTACAGTAATCATGTGGTAGCATCTTAGCTTGTAACCAGTTTGTAGGACTTCTTCATATTTGGACTCTTATGCATTTTTTTTTTAACTTTACAACTCTTAACATCCTTGTGCAATAGAAGGTGTGGTAGGTGTTTTCAATTGCAGACTGAATTATGCCAGCTCCAAGGCCTGCTGCCCTGTAGATGCAATCATGCGAATGCTGCCCTGTAGATGTGATCATGTGAATGCTCGACTTATGATCATGTGGTGATGGCGGCCCTATGAAAAATCCTACGTTCCATGATTTATGTTTTCATCAGAAGTGTAATGTATGATAGCTTTGTAGTAGTAATACTCGTTTCGTACACAATTGAAAACTCGGGAAAGAATTTGCACCACCCAATTAGTTATTGCTTGCCAAGTCAGCGACTCTTGATTGTACTATGGGCTACTTTGCTCATTGACGAGTATTGTTGCTCGTTTGTATGTAGGACCT | |||||||||
gi|21158426|gb|BJ479954.1|BJ479954 BJ479954 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): AGGGGAGCTCTCGTTGCCTGATCGCTGACCCATCGTCCAATTGACCGCAGCGGCAGTTCCACACCGTCAAGGTGCTGCCAGCCACCGCCGTTTTATTGCCTTTGATTCGGCTGTGCGCGTGGGCTGGGAACCGTGCTCTGTTGTCTGATGCGTCGTTGGAGCGGGAGGTTTGGTCGGTCGAGGCCAGGTATGAGCAGCTCCTGAGCTGGCTGGATGGATGGATGCAGGTCATGTGTCGTGAACCAACACCAGGACACCTCTTTTGGAACGGAGGGAGTATATTTTGGAACGGAGGGAGTATGTATGTACGTATGGATATCATGGTCATGTTGCTTGGGGGTTCAACCTCTTTTTTGGATAAAGAAGAGGGGCGATGCCCATAATTATGACTGGCTGAAATAATCATGTCTTTGAGACATCAAGACAGCCGTGGCAAGGTGGGACTAAATAGTGTCTGAAAGTGGGTATCTGCGTTGGAGTTG | |||||||||
gi|18241224|gb|AV945427.1|AV945427 AV945427 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): AAGCTGCAGTTCAGGTGGGCGCTTNTGCTCTCCCTCCACACGCCCTACATCCACGTACACTCTTCTATCGGTACCTACACATACATGCGCCAGGTGGCTGGATCTCGCAGGGGCGATGTTTTTACTCACATCTCATGATGCATGTCAAGCTATTTGGAGCTTGCTTGCATCATTAAATGAGCATGCACTAATTGGACACAAATAAAGGAGATGAGTACTAAATGAACTTGTACTAAACAGAAACAATTTATTTATGGTGTACTCCCTCCGTCCCAAAATAATTGTCTCAAGCTAAGTACAACTTTATACTAGAGGTAATACAAAGTTGAGACATTTATTTTGGGACGGAGGGAGTACATAATTATCAAGTTGAAAGCTGATCTATAAATAGCAAGTATTGTCGTGTGTAAACCTTTTACTTGGTTCGTCTTTTACAGGAGCTCCATGGCTAAGAAAGTTAAAAGTGCGAAAGTGTGAACCCGTGAAACCCTACTCAGCAAAGAGTTGTTTGTTCTATTTGAGTGTAACGGATAGTAAATATTGTAAGTTGGCATATCTGGGGTTGGGGTTGTAATAGACATCAACAATGAATAGACNATTTAGT | |||||||||
gi|21161007|gb|BJ482549.1|BJ482549 BJ482549 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): ATCTAGGCATGTGATCTGCAGGTACTCCCTCCGTCCCATAATATAAGGCGTTATTACATCCAATATACTCACATATTATGGGACGGAGGGAGTATCTAGTTGCTTCCTTTTGAATTAAAACTTTTTAACAACTAGAGCCGCTCTCTTCATCTCCTGAATACTCTTATGGGTGCATCATACCTGAAACCTCTCGTCTTTCAGGTTTTCCAGTTGCAAGTCGATAATGGTATCCCGATAAAGAGCTGGTTTGATGACCCCGCGGACCAGGAATTGGTTGAGTTACTCCCGTTCCTCGAGACCCTTGTTGATGCAGAGGACGTAAGGCCACTAATCTCAAAGACTTTTCACGGCACAATCCAGCAGGATTAGACTTAAGATGCATCCTTATCATGCACTGAGCCTGAGCTTGCCAGTTCCAGCGAGCTCCATCTTGGGAAATTAGGTATTAGGATCAGCATTCACCATTTATGTTATGTTGGCTGTTACAAATAGCAAGCATAAACTGCATGTCGCCATGGCTTGTATATGTAGTATTGTTCGGTTTTCTGTGTCGCAGGTCTTTGTACATAAACTATAGTAT | |||||||||
gi|14526867|gb|AV834778.1|AV834778 AV834778 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): GCGACAAGTAATTCCAGACGGAGGGAGTATTTAGGAACGGAGGGAGTAGATTGTACGAATATTTCATATCGCTCATTGATTTGAAATCTTCGTACTTCTAATGCTGGAAATATCATGGGAGAGTATCACGGCTTCACACTAGTTATCAGTTNCACTATCTAAATCAACATGGAAAGGCCCATCAATATTCCTTGTCATACCATGATTGCTAGATNGTNTCATGGAAAAGGATTTCATATTAGCATATCGCTCATTGATTTGAAATCTTCGNACTTCTAATGCTGGAAATTTCATG | |||||||||
gi|21158426|gb|BJ479954.1|BJ479954 BJ479954 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): AGGGGAGCTCTCGTTGCCTGATCGCTGACCCATCGTCCAATTGACCGCAGCGGCAGTTCCACACCGTCAAGGTGCTGCCAGCCACCGCCGTTTTATTGCCTTTGATTCGGCTGTGCGCGTGGGCTGGGAACCGTGCTCTGTTGTCTGATGCGTCGTTGGAGCGGGAGGTTTGGTCGGTCGAGGCCAGGTATGAGCAGCTCCTGAGCTGGCTGGATGGATGGATGCAGGTCATGTGTCGTGAACCAACACCAGGACACCTCTTTTGGAACGGAGGGAGTATATTTTGGAACGGAGGGAGTATGTATGTACGTATGGATATCATGGTCATGTTGCTTGGGGGTTCAACCTCTTTTTTGGATAAAGAAGAGGGGCGATGCCCATAATTATGACTGGCTGAAATAATCATGTCTTTGAGACATCAAGACAGCCGTGGCAAGGTGGGACTAAATAGTGTCTGAAAGTGGGTATCTGCGTTGGAGTTG | |||||||||
gi|14527271|gb|AV835182.1|AV835182 AV835182 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): CAGCAACTATTCAATCTTTGAGATCTCAGCTTCCTCTTCCTTTTCCTGCTTCGGCAATGCCTCCAGGGGCCGCAACCCTCATGCTGCTGCTACTGCTCGTGTAGGGGAGAGGAGGCCATGGCGCCATCACCATTGGCAGCCTAGACATGGACATGTCCATGGGGGTGGAGGCAGTGTAGATGGGCTCGGAGCCTGCGGCGCACGGGCAGCTGCTATGGGAGGCCGACGGCGGCGGCCGGAGGTACATTAGCTACGACGCGCTGCGGGGGGACGCCGTGCCGTGCTCCAGGCCCGGGGTGCCCTACTACAACTGTCGGGTCAGCACCACCACTAACCCCTACACCCGCTGCTGTGATTCCATCACCCACTGCCGCGACGACGACTCTTCCTAGGTGCTCCCTCCGTCCCAAAATTCTTGTCTTAAATTTACATATAAATATATCTAGTCACGTTTTAGTATTTACATACATTCATTTTTAGATAAACTTAAGACAAGAATTTTGGGACGGTGGGAGTACGTAACAAGTAATTGGCGATTAAAATTGCTGGATCCAGAGAGAGGGTGTTGCTACTCATTTTGTGTGTGCTTTAGTTTTTGG | |||||||||
gi|14527018|gb|AV834929.1|AV834929 AV834929 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TACTCCCTCCGTCCCATAATA EST sequence (targeted fragment marked with yellow): GGTGACAAGACAGGTAAGAAAGGTCATTTATCTGTAGCAACGGAGGTACCGACTCTGTTGCTGATACCGAGACATTAAAATCTTGTTTACAAGTTCCACTAAAATTCTGCTGCTAACTCTAATTAAAAGATCCTTCAGCCAGCCACTGTATCTGAAAACAGAAATCAATACTCCCTCCAATCCATACTAAATCAGCGGCAATTAATATGGATCGGAGGGAGTAAGTAATTTTAAAAGGCACCACGATTGCTCTATAAGGCTGCGTCTACTTTTGCTTTGAGTTCTCA | |||||||||
gi|18242767|gb|AV946970.1|AV946970 AV946970 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TACTCCCTCCGTCCCATAATA |