| mature miRNA: TATTATGGGACGGAGGGAGTA species: Hordeum vulgare subsp. spontaneum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21161007|gb|BJ482549.1|BJ482549 BJ482549 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): ATCTAGGCATGTGATCTGCAGGTACTCCCTCCGTCCCATAATATAAGGCGTTATTACATCCAATATACTCACATATTATGGGACGGAGGGAGTATCTAGTTGCTTCCTTTTGAATTAAAACTTTTTAACAACTAGAGCCGCTCTCTTCATCTCCTGAATACTCTTATGGGTGCATCATACCTGAAACCTCTCGTCTTTCAGGTTTTCCAGTTGCAAGTCGATAATGGTATCCCGATAAAGAGCTGGTTTGATGACCCCGCGGACCAGGAATTGGTTGAGTTACTCCCGTTCCTCGAGACCCTTGTTGATGCAGAGGACGTAAGGCCACTAATCTCAAAGACTTTTCACGGCACAATCCAGCAGGATTAGACTTAAGATGCATCCTTATCATGCACTGAGCCTGAGCTTGCCAGTTCCAGCGAGCTCCATCTTGGGAAATTAGGTATTAGGATCAGCATTCACCATTTATGTTATGTTGGCTGTTACAAATAGCAAGCATAAACTGCATGTCGCCATGGCTTGTATATGTAGTATTGTTCGGTTTTCTGTGTCGCAGGTCTTTGTACATAAACTATAGTAT | |||||||||
gi|21164539|gb|BJ486097.1|BJ486097 BJ486097 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): GAGAATATTGGTTCAGAGATTAAGAACATCAAAGAATTGGTCTGGGGACTGGATGAGAAGATGGATTCAATGGAAGCCAAACAGAATTTTTCATGCGCTGGTGTGATGTACCTCTGCCAATTCATAGAGCAAAGTGGTGGGAAGCTCCCTGAACGCCTGGAAGGCATCAAACCATCAGCGAAGCGATTTTCAACAATTGGCATACAGGGGTTGCAACTAGCCATAGAAACAGGGGATTATCGTGAATTCAGCAATGCTGATTCCACTGACAAGATAAGCAGGTCGAACTCGTTGAAGTCTGCCAACTAATTTTCTTTGGGGTTGGCGAGACGAATATCCAGATTTGTTGCTCAGTGGAACATTGTAAAGGGAGATCCTTGCTGGTTAAAATGTGAAGTGTCCCAGCCTTTTTGTTATTTGCTTGCAGGAAGTGCTGTTTTTTAAACTTGAAAACGTGTGCCAAGTGCTCCCCCCGTCCTGTAATATAAGAGAGCTTCTGACACTAACGCTCTTATTTTATGGGACTTTTATGGGACGGAGGGAGTAGTATCTACTAGGGAATCTAGACCAGAGAGTATTCTGGCATCACTTGTGCCTTGCATTTTTAGGCAATACCTAGCTATAAATAAATGTAACACTTGAGATTCGTTGAACCATTTCATTTATGGGTCTGTAAATCTTGCTGTTTGTGCATTCTGTTTTGAGGATTGCTTCATACAATAAAATGCTGTCGTGTCCCACNT | |||||||||
gi|21161605|gb|BJ483152.1|BJ483152 BJ483152 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): GAAGCTCAGCTTCGTTGCTCCATTGCCGCTGCACATGCGGCTGAGCTGGGAGGTTTTGAAGTCCGTTGACAAGTAAGCGAAGACTGGCGTCCTGAGTCTGTCAGTTCTTTACACCGACCTACTGTGATGCGGATGATGTGTTGCTCAAGACTACAACGACAGAAGCTTCACCAAAAATCTCATTTATAGCACAGTGATAGCGATTCTTTTTTTTCTTTTCGTTAGGGAATTCACTATCCGCATTTTCATTTTCTGCTTGGGAGTCTTAACGCAATGTACTTTTCTGGTTACACTGTTTTCTACCAGCAATCATAGAATATATCTACATCTTGTCAGCTACTCCCTCCGTTTCATAATTCTTGTCAGGTTTTAGTTCAAAATATCAAACCAA | |||||||||
gi|21164365|gb|BJ485923.1|BJ485923 BJ485923 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): CTGTTACTAGGNTGGGTGTGTGCATTCATAGGTNCTGAGTCGTAACACTCCCTCCGTCCCATAATGTAACAGCGTTTTTGACACNATACTAGTATCAAANTCGTTTNNTGNANTATGGGCATGGAGGATGTAGNTGTTATGATGT | |||||||||
gi|14528293|gb|AV836204.1|AV836204 AV836204 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): AGCTTAGTATACACAGGGAAACACAAACACTACGCCCTTGGTTTCATAATATAAAAGCATTGGAACACTAGTGNNGGGNCAAAAACGTTNAAAACGTNNCTTATATTATAAAACGGATAGGGAGAACTTATTTTGCAACACTACCACCACGGNGCCATCAG | |||||||||
gi|21163029|gb|BJ484583.1|BJ484583 BJ484583 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): TACACCAAAGCCGGCTCAGTGGCATCGCATAGCTGTTCATAGCGAGCATCTAGGTGCTTATGCTGTTCAGAAGTTGGTGAAAAACTCTGCGGTATATATTGAGGGTGATATCGAAACCAGGATCTACAATGATGGAATTGATGGTCAAGTCAGGAATATACCGGAGATCTGTATTCGGGGTGATGGTAAGATTCGTCTGGTTAAATCTGGGGAGAGTGCTGCTAACATATCACTAGATGAGCTGAGAGACGGATTGTTCTAGTTAAAGCTATCGATGTCAGCACAAGCAGGTCATAACTCGTAACTAGCGGCGGGTTAAGTCGAGAATAAGGCGCTGCTTTGTTGAAGCCTTGAAGCATGACATGGATATTTGTTGCTCCTTCCGTCCCATAATAAACACTCTTATATTATGGGGCGGAGGGAATACATCTCAATCTTGGCAGAAGCAGTTAAATTTACCAGTGGATGCATGTAAGCCTTCCTGGAACCCGCTCGTGTGTTTTACCATGTTGCGGATGCTGATGGACGAACTGTTTTACGACGGTTGACGATGACATGATGTGCTGAAGATTGTTCAAGATAAGGCAGGTAGAACAGCGTAGGCGGCACAGAAGGCC | |||||||||
gi|18242682|gb|AV946885.1|AV946885 AV946885 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): ACCGGCGACGACGNAAGCACCGGCATCATCGGCAACGTGCAGCAGAGGACCCTTGAGGTGCTCTACGACGTAGGCCAGAGCGTCTTCGGGTTCAAGTCCAACGCGTGCTAGCTGCTCATCACCGGGAGAGCTCAGCGCTCGCGCGCGGGACACGGGAATGAAGGGTGGCTAGCTAGGCTGCTCTCACGTGGTTGTCTTCTTGTTTCTAGTTGCGAGGTAAGGGACACCAAGTGGGCCAAAATCATCGTGCTTCCTCAGTTCCATAATATAAAAGTGTTCACGCATAAAGGGAGCGTTTAATTTCTCTCTGATAGCAGCAACATGATGAGATGCATGTGTAATCTATCAAATCAAACGATTAGGATAATCTTCTCCTGATTTTCCATTCATAAACAAATAAAGAGGCAATAATGGATTAAATGAAGAGTAAATTCCATTTTGACCCGTATTTTGCCGTTTTAATGGAATTACAGCCGTTTAAGAGATTTTCATCCATTTCACCCTATTTAGGAAAAGTCAAGCCAAACTTGATCCCTTTAAAAAAGGTCAGGACTTAAGGAAAATGTTTTTTAATAAATTTAGAAAACAATTAATTAAAAAGCACAAAGTTGACAGAAAAATCACGAATTTAAAGAATATCATTTTATTCAGGAAGGTTCATAAATTCTAAACCTTTTCTTATTNAAAAAGGTTCTTTCATT | |||||||||
gi|18241224|gb|AV945427.1|AV945427 AV945427 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): AAGCTGCAGTTCAGGTGGGCGCTTNTGCTCTCCCTCCACACGCCCTACATCCACGTACACTCTTCTATCGGTACCTACACATACATGCGCCAGGTGGCTGGATCTCGCAGGGGCGATGTTTTTACTCACATCTCATGATGCATGTCAAGCTATTTGGAGCTTGCTTGCATCATTAAATGAGCATGCACTAATTGGACACAAATAAAGGAGATGAGTACTAAATGAACTTGTACTAAACAGAAACAATTTATTTATGGTGTACTCCCTCCGTCCCAAAATAATTGTCTCAAGCTAAGTACAACTTTATACTAGAGGTAATACAAAGTTGAGACATTTATTTTGGGACGGAGGGAGTACATAATTATCAAGTTGAAAGCTGATCTATAAATAGCAAGTATTGTCGTGTGTAAACCTTTTACTTGGTTCGTCTTTTACAGGAGCTCCATGGCTAAGAAAGTTAAAAGTGCGAAAGTGTGAACCCGTGAAACCCTACTCAGCAAAGAGTTGTTTGTTCTATTTGAGTGTAACGGATAGTAAATATTGTAAGTTGGCATATCTGGGGTTGGGGTTGTAATAGACATCAACAATGAATAGACNATTTAGT | |||||||||
gi|14527271|gb|AV835182.1|AV835182 AV835182 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): CAGCAACTATTCAATCTTTGAGATCTCAGCTTCCTCTTCCTTTTCCTGCTTCGGCAATGCCTCCAGGGGCCGCAACCCTCATGCTGCTGCTACTGCTCGTGTAGGGGAGAGGAGGCCATGGCGCCATCACCATTGGCAGCCTAGACATGGACATGTCCATGGGGGTGGAGGCAGTGTAGATGGGCTCGGAGCCTGCGGCGCACGGGCAGCTGCTATGGGAGGCCGACGGCGGCGGCCGGAGGTACATTAGCTACGACGCGCTGCGGGGGGACGCCGTGCCGTGCTCCAGGCCCGGGGTGCCCTACTACAACTGTCGGGTCAGCACCACCACTAACCCCTACACCCGCTGCTGTGATTCCATCACCCACTGCCGCGACGACGACTCTTCCTAGGTGCTCCCTCCGTCCCAAAATTCTTGTCTTAAATTTACATATAAATATATCTAGTCACGTTTTAGTATTTACATACATTCATTTTTAGATAAACTTAAGACAAGAATTTTGGGACGGTGGGAGTACGTAACAAGTAATTGGCGATTAAAATTGCTGGATCCAGAGAGAGGGTGTTGCTACTCATTTTGTGTGTGCTTTAGTTTTTGG | |||||||||
gi|21163291|gb|BJ484846.1|BJ484846 BJ484846 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): ACAGTCAAGTTATGTGATTTTGGGCTCTCTCGGTTATTGTCGAATTCTGCAATGAGTGACAACTCATCTGCAGGCACTCCAGAGTGGATGGCTCCTGAGCTTATTCGTAACGAACCATTTACAGAAAAGTGTGATATCTTCAGCCTAGGAGTTATCATGTGGGAGCTTTGCACTCTGAGTAGGCCCTGGGCAGGAAAGCCGCCAGTTCAGGTTGTTTACTCTGTTGCGAACGAAGGGGCAAGATTGGAAATACCAGATGGACCTCTGGGTAGCTTGATAGCAGATTGCTGGACAGAACCGGANAAGCGCCCAAGCTGCCAGGAGATCCTCACTCGTTTGCTTGATTGCGAGTACACCTTATGTTGAGCTACCTAGCTCTAGTATGTATATCAGCTACAGGCAACACATTGGTTCGGTTTATATTCCCTCCGTCCCAAAATAAGTGCCGTTGCTTTAGTACTATATTTGTACTAACTTAGTTCTAAATTTGGGTCACTTAATTTGGAATGAAGGGAGTACATCATTTGCTTTCCCCCTTTTCACCATTTTGACATTTT | |||||||||
gi|21161288|gb|BJ482830.1|BJ482830 BJ482830 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): TATTACCCTGCCAAAAGATGGCACTGAACATATTTGAACCTCGCTACAGGCTGATGGTAAGGAGGATAATGGAAGGGAATCGTCGGATGGGAATGGTTGCTATTGATTCTGCGACGGGAACTGTAGCTGACTGTGGTTGTGAGGTGGAAATTCTTGAGTGTGAGCCACTTCCAGATGGACGTTTTTATCTAGAGCTAATCGAAAGGGCCAATGAAGCTTCAGAACTGGCTAGGACGTACATTAGGCGTGCCAGAGAAACCATAACACCTGTGAGGCGGACACGACATTTCGATCTTGAGAGCATTCCTGGACCACAGGACCCTGAGAAGTTCAGTTTTTGGCTTGTCAACTTGATTAATTTGAGGCCATCGGATAAATTAGATCTATTACGCCTCTGTGATACTCGGGAGAGAATATCTCGTAGCCTTAGATTGCTGGGTAATGCAGAACAAGGTTGCCGTGTACAGTAACGGATTATATATTTGGCGCAAAACCATTATAGAATCAATTTACTCATCACTCGGTACATTGACTAACAATGTACTCCCTCCGTTCCATAATATAAGAACGATTTTTACACTACCACATATTCTGATGCTAGTGAAATTCTTANATTTTGTATGTTCTTTTATTCTCTTATTACCCCAAAAAAA | |||||||||
gi|21164355|gb|BJ485913.1|BJ485913 BJ485913 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): GGCCACGTCAAGACAGGTGGCCCAATGATGGCCGCGGAGGATTTCTCGTTCTACACGCAGAGATTCCCAGGGGCATTTTTCATGATAGGAACCCGCGACGAGGCCATGGCAACCGCGGTGCATCCACTCCACTCCCCCAACTTTGTGATCGATGAGGGTGTGCTCCCGGTGGGAGCTGCCTTCCATGCTGCTGTGGCGATGGAGTACTTGAACAAGCACGGAACCGTGGCAAAATAGATTACTGATGTCCGTTCGAAATTTAGGATGTTGCAGTGGGCAGCCTGCCGATTACTGTTACTAGGATGGGTGTGTGCATTCATAGGTACTGAGTCGTAACACTCCCTCCGTCCCATAATGTAACAGCGTTTTTGACACTATACTAGTATCAAAATCGTTTTTGTATTATGGGATGGAGGATGTAGTTGTTATGNATGTG | |||||||||
gi|21163294|gb|BJ484849.1|BJ484849 BJ484849 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): GATTCAAAGACCAAGAAAGATGGTGGAAATGATCCCATGGACGAGAGTTGATTGCGGGGTGCACCTAGGGCTGTAGCCTTGATGTGAGTTGCTCATGCCGTCATCTGCGGTGGAAAGTATCAATTTTTAAATCTGATGGCACGCAAAGCACAGGACGTTTTATTTGGCACCCCCTCCGAATCTAGATACTATTTTGGCTGTGAATTTTAGATGCTTTCAGTCGCTTCCATATTTACCAGTTGATTCCGTGTCGTGACTTGAGTATTCTAAAAAATGCTTCCATAGGTTTCGGTTGGTACAATTGCGTGACATGGATATATTTTCAAAAATGCTTCTGAGGTTCTAGCTGGTACCGTTGTGCGACATGAATACATATGCTCTGTCTGTCCCAAAATAACCGTTTCAACTCTGTACTAGCTCTATGGTATCGTTGTGCGACATGAATATATATTCATATGCTCCGTCTGTCCCAAAATAACTGTTTTAACTTTGTACTATCTCTATTACAAAATTATACTAAGTTTAAGACATTATTTNGGACGGAGGGAG | |||||||||
gi|18239961|gb|AV944164.1|AV944164 AV944164 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): GCGTTCTAAGTTCCTGGTATACAAGCGCTGAGATTCTCAACTTTTGTGCTATTGTAATACTGATATTACCTTCTGCTGGAAAGTATTATTAAGTCAATGTTCTGGGAGAAGACGTTGAGTCAACTAGTTTGGTAATTTACCTGGCTAAGATGCAAAAGAGGGCATTTTGGATGCCTATAGTGGAAAAAGAACTGAGAAAAATCGTCTCGACGGGTTGTGTCAAGCAAGGAAGGTGTGACAACAAACACGCATTTTGATATTCTGGCAGTCTTTTGTAGTGTAATTTAGTACTTCCTCTGTCCCAAAATAACTGTCTCAAGCTTAATACAAATTTGTATTAAAGCTAGTATAAATTAAGACACTTATTTTGGGACGGAGGGAGTATCTAAGAGTATATTCTCGGTCCCTAGTAGTGATGTTCTAGATAGGACCAGTGGGGAAGCTACAAGATGTAATTTCCACTAGTGGGGAAGCTAGGAGATGTTCTAGATAGGATTTGGGGCTAACTACGTTTTTTTAAGGTGTAATTTCCACTAGTGAGCAATGAGAAAGACTAGATCACTGAAGGATGTATGGATTCGNATTGGGACCGAATAGNATGTAT | |||||||||
gi|21163294|gb|BJ484849.1|BJ484849 BJ484849 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TATTATGGGACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): GATTCAAAGACCAAGAAAGATGGTGGAAATGATCCCATGGACGAGAGTTGATTGCGGGGTGCACCTAGGGCTGTAGCCTTGATGTGAGTTGCTCATGCCGTCATCTGCGGTGGAAAGTATCAATTTTTAAATCTGATGGCACGCAAAGCACAGGACGTTTTATTTGGCACCCCCTCCGAATCTAGATACTATTTTGGCTGTGAATTTTAGATGCTTTCAGTCGCTTCCATATTTACCAGTTGATTCCGTGTCGTGACTTGAGTATTCTAAAAAATGCTTCCATAGGTTTCGGTTGGTACAATTGCGTGACATGGATATATTTTCAAAAATGCTTCTGAGGTTCTAGCTGGTACCGTTGTGCGACATGAATACATATGCTCTGTCTGTCCCAAAATAACCGTTTCAACTCTGTACTAGCTCTATGGTATCGTTGTGCGACATGAATATATATTCATATGCTCCGTCTGTCCCAAAATAACTGTTTTAACTTTGTACTATCTCTATTACAAAATTATACTAAGTTTAAGACATTATTTNGGACGGAGGGAG | |||||||||