| mature miRNA: TCCCTCTGTCCCAAAATAAGT species: Hordeum vulgare subsp. spontaneum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21162953|gb|BJ484507.1|BJ484507 BJ484507 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TCCCTCTGTCCCAAAATAAGT EST sequence (targeted fragment marked with yellow): CCGGGCTCAGCTCCGTTCTGAAAACCAAGAGCCAGAAGATCATGGACCAGATCAGCGAGCTAGAAAAAAAGAGGGTGCAACTGATAGAGGAGAACGCAAGGCTAAAGGAGCAAGCGTCCAAGATGGAGATGCAGGTCGCCGCTGATCCACTGGTGGTGGTGTACGATGAAGGGCAGTCATCTGAGTCTGTCACCAACACGTCGTATCCACGCCCTCCCCTCGACACCGAGGACAGCTCCGACACATCTCTCAGGCTCGGATTATCACTCTTCAACTCGAAGTGATTGGCTGGAAATTACCCGAAGCGAAGTGACGCTTGGTCACGACCAACTCCTGAATCGAACCACGCGCTGCATTGAATAAACAGTTTGAGCGCACTGGATGATGTGTGTAATCTAAAAGAAGACTGGCTTCTGTTATACTCCCTCCGTCTCAAAATAACTGTCTCAACTTTGTACTAGCTCTAGTACAAAGTTGTACTAAGCTTAAGACACTTATTTTAGGACCGAGGGAATATATAGCATAGTGTGGTACAATAAGAGAACAGGTTCTTGTGATATTACCTGCTACTGTTTTTTC | |||||||||
gi|21164201|gb|BJ485759.1|BJ485759 BJ485759 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TCCCTCTGTCCCAAAATAAGT EST sequence (targeted fragment marked with yellow): CGTAGTACACCTCCTGCATCGAAATCCAAGCAAAAGAGGAAATCAGGTGGTGATGATGCCAAATCATCTAGTGGTGCAGCTTCAAAGAAAGCAAAGGTGGAATCTGATACAAAAACATCAAGTATCAAAGACGAGACACCGGCTTCATCAAAACCTACACCAAAGGCCTGTGCTTCATTGAAAAGTGCCAATGTATCTCCTGTGACAGAGGATGAGATCAGGACTGTTCTTCTTGCAGTGGCTCCTGTCACCACACAAGATTTAGTGTCCAGATTTAAGTCTAGACTACGAGGTCCAGAGGACAAGAATGCCTTCGCTGAAATTCTGAAGAAAATTTCAAAGATACAGAAGACAAACGGCCACAACTATGTCGTCCTTAGAGAGGATAAGAAATGATGGGCTCTAAAGTGGTGATTTTCTTCATTGCGAAGTTTCCTCATGTCTTTCTCTGGAGATAATAGTTTTGTACTCCCTCCGTATCAAAATAAGTGTCGCTGATTTAGTATAAAATTTGTACTAATTTAGTTATAAATTTGTGACACTTATTTTGGGACAGAGGGAGTATGCCGAACTTCTACTGCAGCTTGCTTCTAGTAGAAATCAAATAATGATAGGTGCAATGTTGTCATTTCCTGGTGTCATTCTAGAAGAAGTTGCAAGGTTATGATGATGTGTGAGAACAGGTATATTGATGCCAAGACCGTGGTCTCTCTAAACCTANAATCCAAAGNAGTAAAANCTAGAACGA | |||||||||
gi|18239961|gb|AV944164.1|AV944164 AV944164 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TCCCTCTGTCCCAAAATAAGT EST sequence (targeted fragment marked with yellow): GCGTTCTAAGTTCCTGGTATACAAGCGCTGAGATTCTCAACTTTTGTGCTATTGTAATACTGATATTACCTTCTGCTGGAAAGTATTATTAAGTCAATGTTCTGGGAGAAGACGTTGAGTCAACTAGTTTGGTAATTTACCTGGCTAAGATGCAAAAGAGGGCATTTTGGATGCCTATAGTGGAAAAAGAACTGAGAAAAATCGTCTCGACGGGTTGTGTCAAGCAAGGAAGGTGTGACAACAAACACGCATTTTGATATTCTGGCAGTCTTTTGTAGTGTAATTTAGTACTTCCTCTGTCCCAAAATAACTGTCTCAAGCTTAATACAAATTTGTATTAAAGCTAGTATAAATTAAGACACTTATTTTGGGACGGAGGGAGTATCTAAGAGTATATTCTCGGTCCCTAGTAGTGATGTTCTAGATAGGACCAGTGGGGAAGCTACAAGATGTAATTTCCACTAGTGGGGAAGCTAGGAGATGTTCTAGATAGGATTTGGGGCTAACTACGTTTTTTTAAGGTGTAATTTCCACTAGTGAGCAATGAGAAAGACTAGATCACTGAAGGATGTATGGATTCGNATTGGGACCGAATAGNATGTAT | |||||||||
gi|18241224|gb|AV945427.1|AV945427 AV945427 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TCCCTCTGTCCCAAAATAAGT EST sequence (targeted fragment marked with yellow): AAGCTGCAGTTCAGGTGGGCGCTTNTGCTCTCCCTCCACACGCCCTACATCCACGTACACTCTTCTATCGGTACCTACACATACATGCGCCAGGTGGCTGGATCTCGCAGGGGCGATGTTTTTACTCACATCTCATGATGCATGTCAAGCTATTTGGAGCTTGCTTGCATCATTAAATGAGCATGCACTAATTGGACACAAATAAAGGAGATGAGTACTAAATGAACTTGTACTAAACAGAAACAATTTATTTATGGTGTACTCCCTCCGTCCCAAAATAATTGTCTCAAGCTAAGTACAACTTTATACTAGAGGTAATACAAAGTTGAGACATTTATTTTGGGACGGAGGGAGTACATAATTATCAAGTTGAAAGCTGATCTATAAATAGCAAGTATTGTCGTGTGTAAACCTTTTACTTGGTTCGTCTTTTACAGGAGCTCCATGGCTAAGAAAGTTAAAAGTGCGAAAGTGTGAACCCGTGAAACCCTACTCAGCAAAGAGTTGTTTGTTCTATTTGAGTGTAACGGATAGTAAATATTGTAAGTTGGCATATCTGGGGTTGGGGTTGTAATAGACATCAACAATGAATAGACNATTTAGT | |||||||||
gi|14527897|gb|AV835808.1|AV835808 AV835808 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TCCCTCTGTCCCAAAATAAGT EST sequence (targeted fragment marked with yellow): TTCAATAGCAGNNTCAAATTAGNATGGTCATGTACATATTACATGGTACTCCCTCCGTCTTAAAATAATTGTCTCAACTTTGTACTAGCTTTAGTATAAAATTGTACTAAGGTTAAGACACTTATTTTGGGACGGAGGGAGTACATATAAGGCTCAACCAGNATTAATTTAGGGGAGGGGGGAGAGGACTGTACAATTTCTGACAAAATTGGAGATGAACATATCTCCTGATCACAAACTCACCCTGACGTCCGTCAGAAAGATGAAAACCTCAATGCTGGTAAGGCCTCAAAGTTTCTCTAGTTCACGTTCCATCGAAGCGAAGTCAAAACCTTCCCAATCAAGTCCTACATCCAACTCAAACATTGGCAACGGTAGATGGCTGATGTCTGCCAGCCCGATGTAGTCGTCGCCAGGCGGTTTGCCTGTTGTGTCAACGAAGTCATTGACATGAAACATATCTGCCAGCCTTGAAATATCATCCAGTGAGAGTTTGTCAGTTGTGCAAACATAGTCACTGATAGGAAGCTCATTTATCTGGCTGTGGAATGCATCCACTGGAATTTCTTCATCGCTAGGTGTCGATGAGCAGTGCACTAAGCTTTCATCAACATTCATCCGGCCAAGGAATGCATCTACCTCAATTTCTTTACCTGGCAGTTCTGGTGAGCAATGCAGTAAGCTCTCATCAGCAGTGTCAGGGTCTATCTCCATTGGCGCTACCTTG | |||||||||
gi|21162646|gb|BJ484198.1|BJ484198 BJ484198 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TCCCTCTGTCCCAAAATAAGT EST sequence (targeted fragment marked with yellow): TAGATTTGTTTACATGTAAGTGTATCTAGTCACGTTTTGGTATTTAGATACATCAACTTTTAGACAAACCTAAGACAAAAATTTTGGGACGGAGGGAGTAATATGATTGAAATTGTTGTTACATTGCCCTGCATGGATTTGGTGGCAAGACTAACTAAAATGCGGTATTTATTTTCTATGTCCTTGCATGAAGTTATCTCGATCTCAACATTCATGTCTCAGAATGCCCGAGGATAGTGCCGAGAAGACCAACATGGTGCGGGAGCCATCCAAGGATTTTAAGAACCTGAACTTGAAGTTGCTCCAGATGTCCGGGTTCGAGGAGGAAGACAATGTGACAACCTATATAAGGCTTGTCATGGAACGAGCTGTGGGGTTAAAGAAAATCGAGCTGCAAGGTTACCGCCCATTCTGGGCCTGCAATGCCACCGACGCTGATAGAAAATCCCAGGTGGATGAAGCTAGCAGGCGTCGGATTAAGGAGCTGCTCGCGAATGGATCCTCCTCATCTGTGGAGATAGTAATTTGTTGACAGGTATGGTCAAGGAATGTAAGTTTCAGAACGCTCGCAGCTGCTAGATTAATGACTTTGCACAGTCAATTGTAATTTCAGTTTCTAGTTATTGATAGCCCCAGAGTACTCAATTGCTATGGACCTCATACTGTAGCTAGATTATGTGTGTACT | |||||||||
gi|21161007|gb|BJ482549.1|BJ482549 BJ482549 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TCCCTCTGTCCCAAAATAAGT EST sequence (targeted fragment marked with yellow): ATCTAGGCATGTGATCTGCAGGTACTCCCTCCGTCCCATAATATAAGGCGTTATTACATCCAATATACTCACATATTATGGGACGGAGGGAGTATCTAGTTGCTTCCTTTTGAATTAAAACTTTTTAACAACTAGAGCCGCTCTCTTCATCTCCTGAATACTCTTATGGGTGCATCATACCTGAAACCTCTCGTCTTTCAGGTTTTCCAGTTGCAAGTCGATAATGGTATCCCGATAAAGAGCTGGTTTGATGACCCCGCGGACCAGGAATTGGTTGAGTTACTCCCGTTCCTCGAGACCCTTGTTGATGCAGAGGACGTAAGGCCACTAATCTCAAAGACTTTTCACGGCACAATCCAGCAGGATTAGACTTAAGATGCATCCTTATCATGCACTGAGCCTGAGCTTGCCAGTTCCAGCGAGCTCCATCTTGGGAAATTAGGTATTAGGATCAGCATTCACCATTTATGTTATGTTGGCTGTTACAAATAGCAAGCATAAACTGCATGTCGCCATGGCTTGTATATGTAGTATTGTTCGGTTTTCTGTGTCGCAGGTCTTTGTACATAAACTATAGTAT | |||||||||
gi|14526800|gb|AV834711.1|AV834711 AV834711 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TCCCTCTGTCCCAAAATAAGT EST sequence (targeted fragment marked with yellow): GNAATTCGGCACGAGGGTTTATTGTATACTCCCTCCCGTGCCCAAAATAAGTGAGTCACTTATTTTGGGACGGAGGGAGTATTAGATTGTAAAAAACCTCTAAGTTAGTAAACTAGATCTGTCCAGTTTTAGGAAATTTGTAAATACAGTGTGCCTTGGTAAAAAAACACACTTCTTTAAAAAACTGGAAATCATATTCTTATCACCAATCTTTTTTCATTTATATTCATATATTNNTCTGCATATCTTACTTGCTCTCTCAGCTACAGGGTTATTCATGTTTCTTCTACTCGCGTTTGTTTCTGACGGCAACAGAGGCAAAGGAACATACATACTCAGGGTAGTCCCGACTGATGCTTTTCATGCAGATAAAACAGTACGGATAGCTGACCAGAAGTGAACATGGAACCTCTTGAATTATTGCGGAAAGGTGTGATTTGGGAGAATATATGTTGATCAGAATAGGTTTTGTGAACGTCTGTAGGTCATGCACGTATGCAGAGAATTGATTC | |||||||||
gi|21164539|gb|BJ486097.1|BJ486097 BJ486097 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TCCCTCTGTCCCAAAATAAGT EST sequence (targeted fragment marked with yellow): GAGAATATTGGTTCAGAGATTAAGAACATCAAAGAATTGGTCTGGGGACTGGATGAGAAGATGGATTCAATGGAAGCCAAACAGAATTTTTCATGCGCTGGTGTGATGTACCTCTGCCAATTCATAGAGCAAAGTGGTGGGAAGCTCCCTGAACGCCTGGAAGGCATCAAACCATCAGCGAAGCGATTTTCAACAATTGGCATACAGGGGTTGCAACTAGCCATAGAAACAGGGGATTATCGTGAATTCAGCAATGCTGATTCCACTGACAAGATAAGCAGGTCGAACTCGTTGAAGTCTGCCAACTAATTTTCTTTGGGGTTGGCGAGACGAATATCCAGATTTGTTGCTCAGTGGAACATTGTAAAGGGAGATCCTTGCTGGTTAAAATGTGAAGTGTCCCAGCCTTTTTGTTATTTGCTTGCAGGAAGTGCTGTTTTTTAAACTTGAAAACGTGTGCCAAGTGCTCCCCCCGTCCTGTAATATAAGAGAGCTTCTGACACTAACGCTCTTATTTTATGGGACTTTTATGGGACGGAGGGAGTAGTATCTACTAGGGAATCTAGACCAGAGAGTATTCTGGCATCACTTGTGCCTTGCATTTTTAGGCAATACCTAGCTATAAATAAATGTAACACTTGAGATTCGTTGAACCATTTCATTTATGGGTCTGTAAATCTTGCTGTTTGTGCATTCTGTTTTGAGGATTGCTTCATACAATAAAATGCTGTCGTGTCCCACNT | |||||||||