| mature miRNA: TGACAGAAGAGAGAGAGCAC species: Hordeum vulgare subsp. spontaneum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21156840|gb|BJ478354.1|BJ478354 BJ478354 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TTCGGCACGAGGCGTCCTTCTCGGCTCCAAGGCCGGAGCCAAGCTGGTCCGGGATCATCAAATCCGAGGACAGCAATCCATTCTACAGCACGCACCAGGTTAACTTCGGCGGCGCCACGTCGTCATACTCCAAAGAAGGCCGGCGCTTCCCCTTCCTCCACGAAGGAGACCAGATGAGCTTCAGCACCGGCGCGCCGGCACTCGAGATCCCCGTGTGCCAGCCTCTCCTCAAGGCCGTCGCCCCGCTGCCGCCGCCGCCCGAGAGCAGCAGCAGCAACAAGATGTTCTCCGATGGACAGTTGACGCACGTGCTCGACTCCGACTGTGCTCTCTCTCTTCTGTCATCCCCGGCCAACTCCTCCAGCGTCGACGTCAGCCGGATGGTCCGTNCAAGCGAGCACGTCCCCTCTGTCCCCAG | |||||||||
gi|18240764|gb|AV944967.1|AV944967 AV944967 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTTTGACAGGCTCAAGGCAAAGGAAATAGACCTNCAGGTAACAGAGAAGTTCCGGGATAGAGTTGTCGACGAGGGTTACAACCCAAGCTATGGTGCCAGGCCTCTGCGACGGGCTATTATGAGGCTTTTGGAAGACAGCCTCGCGGAGAAGATGCTGGCTGGCGAGGTCAAGGAAGGTGATTCTGCTATTGTTGATGTGGATTCAGATGGTAAGGTGGTGGTTCTCAACAGTGGGAGTGGTATTGCAGAGCCGCTGGCGCCTGTGCTGAGTGCCTAGTTGGGGGTCCTTTTTATTTCGCTATCTCCGCTTGGGGTCCTGGTGATGGTACCTAGATTAATATCACTCCCCTTTCAGTCATGTGTTCTACTCTTCCTTTTTCTCTCTCTTCTTTCACTCTGCTTNAAGTTTCAAGTTTGAAGCGAGGCACTAGNAAATTGTTATGTAAACGTAAACAAACANAG | |||||||||
gi|21163158|gb|BJ484713.1|BJ484713 BJ484713 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTGAAAGAGATAGCTGATATTATGCTCAAAGAGGTGTTTGACAGGCTCAAGGCAAAGGAAATAGACCTCCAGGTAACAGAGAAGTTCCGGGATAGAGTTGTCGACGAGGGTTACAACCCAAGCTATGGTGCCAGGCCTCTGCGACGGGCTATTATGAGGCTTTTGGAAGACAGCCTCGCGGAGAAGATGCTGGCTGGCGAGGTCAAGGAAGGTGATTCTGCTATTGTTGATGTGGATTCAGATGGTAAGGTGGTGGTTCTCAACAGTGGGAGTGGTATTGCAGAGCCGCTGGCGCCTGTGCTGAGTGCCTAGTTGGGGGTCCTTTTTATTTCGCTATCTCCGCTTGGGGTCCTGGTGATGGTACCTAGATTAATATCACTCCCCTTTCAGTCATGTGTTCTACTCTTCCTTTTTCTCTCTCTTCTTTCACTCTCTTGAAGTTTCAAGTTTGAAGCGAGGCACTAGAAATTGTTATGTAAACGAAACAAACATAGATGCATGTANAGCAAGCT | |||||||||
gi|21164115|gb|BJ485673.1|BJ485673 BJ485673 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GACAATGTTATGCCGCATGGTGCACATCATGGTTTCGATGGGTTCATGGCATTCAAGGGAACTTCTACAAAGTTCCCTAATCAAGGTGTCCAAGCTTCCGCTGTCGCCCCCAACTCCAGTGGCGCCCCGGATCTTCAGCATGCTCTCTCTCTTCTGTCAAGCAACCCAGTGGGTGCTGCCAACCTCCAGCCAACTTCCCAGATGCACTCTGGGGTGGCTGCCATTGCCGGCACCCCCAACCCCGCGATGCACGTGCTGGGATCATCGGCAGGGCTCTGGCTAGACGGCGGGCCACCCCTAGATGATCACCCGCGGTTCCAGGTCTTCGAGCGCTTGGGGGACCACGACAGCGAGCTCCAGCTCCCAAAGCCTTCCTACGACCACGCCTCGCACTTCGACCGGATGCACTGATGACGACGGCGCTCCGATCCGGTCACCCCGCTCGGTGCGTGATTTTATCACGCGATCGACGCCGTTTGTTCGGTCTGAAACCCGGGATCCTGCATTTTCTTTGCTTGGTGCCGTTGCCTGCCTAGAGGCTTATGGTTTGGCAATGCCTAGAATAAAGGCGCACACGAACAGACTTAGGATCAAATTGACCCGGTTGTGTTGCCAGGAAGAAGATCTNATCCATCATT | |||||||||
gi|18241727|gb|AV945930.1|AV945930 AV945930 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GACCTCCAGGTAACAGAAAAGTTCCGGGATAGAGTTGTCGACGAGGGTTACAANCCAAGCTATGGTGCCAGGCCTNTGCGACGGGCTATTATNAGGCTTTTGGAAGACAGCCTCGCGGAGAAGATGCTGGCTGGCGAGGTCAAGGAAGGTGATTCTGCTATTGTTGATGTGGATTCAGATGGTAAGGTGGTGGTTCTCAACAGTGGGAGTGGTATTGCAGAGCCGCTGGCGCCTGTGCTGAGTGCCTAGTTGGGGGTCCTTTTTATTTCGCTATCTCCGCTTGGGGTCCTGGTGATGGTACCTAGATTAATATCACTCCCCTTTCAGTCATGTGTTCNACTCTTCCTTTTTCTCTCTCTTCTTTCACTCTCTTGAAGTTTCAAGTTTGAAGCGAGGCACTAGAAATTGTTATGTAAACGAAACAAACATAGATGCATGTATGAGCAAGCTGTATGCTATATCTTTTGAGTTCTCTCCCTCTTTTTCTTTTTCTTTTTTAT | |||||||||