| mature miRNA: TTATTTTGGGACGGAGGGAAT species: Hordeum vulgare subsp. spontaneum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|18241224|gb|AV945427.1|AV945427 AV945427 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): AAGCTGCAGTTCAGGTGGGCGCTTNTGCTCTCCCTCCACACGCCCTACATCCACGTACACTCTTCTATCGGTACCTACACATACATGCGCCAGGTGGCTGGATCTCGCAGGGGCGATGTTTTTACTCACATCTCATGATGCATGTCAAGCTATTTGGAGCTTGCTTGCATCATTAAATGAGCATGCACTAATTGGACACAAATAAAGGAGATGAGTACTAAATGAACTTGTACTAAACAGAAACAATTTATTTATGGTGTACTCCCTCCGTCCCAAAATAATTGTCTCAAGCTAAGTACAACTTTATACTAGAGGTAATACAAAGTTGAGACATTTATTTTGGGACGGAGGGAGTACATAATTATCAAGTTGAAAGCTGATCTATAAATAGCAAGTATTGTCGTGTGTAAACCTTTTACTTGGTTCGTCTTTTACAGGAGCTCCATGGCTAAGAAAGTTAAAAGTGCGAAAGTGTGAACCCGTGAAACCCTACTCAGCAAAGAGTTGTTTGTTCTATTTGAGTGTAACGGATAGTAAATATTGTAAGTTGGCATATCTGGGGTTGGGGTTGTAATAGACATCAACAATGAATAGACNATTTAGT | |||||||||
gi|21161577|gb|BJ483123.1|BJ483123 BJ483123 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): AGATATGCAACGTCTAAGTGTTGCATTGGTAGATGTTCTGGTGTTTCAGTATTGTTTTCTTGTTGCTGTTATTGTTTTGATCTGCCATATAGATTGTGTTGTGTTGGATTTTTAAGCTTTTGAGGAGATGTCATTTCGCTGGTTCTTTTCTGCCATATAAAAGATCAAGCATGTTTTTTTTGGCAATTATGAATATCAGCCTTTTTCAGTGTTACTTATCTGCGTGTCTATTACTTTTTACAAAATGCGGTTGCAGATTGCAAGTAAGCATGATTGTGCTCAGTTTAAATAAACTACCGATGCAGATAGGTCCTACTTCAGGAATATAAGGTTGTACTCCCTCCGTCCTAAAATAAGTGTCTTTGATATCTCATTTAGTACAATATTAAGTGTCTCTGATTTCCGATTTTCTACAACGTTGGTAGAAGTNAACACGGAGGGAGTTTATGCCATAATTTANAGTTATTGTACTCTTAAAA | |||||||||
gi|21163294|gb|BJ484849.1|BJ484849 BJ484849 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): GATTCAAAGACCAAGAAAGATGGTGGAAATGATCCCATGGACGAGAGTTGATTGCGGGGTGCACCTAGGGCTGTAGCCTTGATGTGAGTTGCTCATGCCGTCATCTGCGGTGGAAAGTATCAATTTTTAAATCTGATGGCACGCAAAGCACAGGACGTTTTATTTGGCACCCCCTCCGAATCTAGATACTATTTTGGCTGTGAATTTTAGATGCTTTCAGTCGCTTCCATATTTACCAGTTGATTCCGTGTCGTGACTTGAGTATTCTAAAAAATGCTTCCATAGGTTTCGGTTGGTACAATTGCGTGACATGGATATATTTTCAAAAATGCTTCTGAGGTTCTAGCTGGTACCGTTGTGCGACATGAATACATATGCTCTGTCTGTCCCAAAATAACCGTTTCAACTCTGTACTAGCTCTATGGTATCGTTGTGCGACATGAATATATATTCATATGCTCCGTCTGTCCCAAAATAACTGTTTTAACTTTGTACTATCTCTATTACAAAATTATACTAAGTTTAAGACATTATTTNGGACGGAGGGAG | |||||||||
gi|24971200|gb|BJ552749.1|BJ552749 BJ552749 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): TAGNNCAAAGAGTTGTTCCTGTGTTAGCCAATGATACTCCAGAGCAATTGGCTGCAAGGGTTCTTCATGAGGAGCACCAAGTTTACGTTGAGGCAGTTGCTGCCTTGTGCGAGGATCGAATTGTGTGGCGAGACGATGGTGTCCCACTTGTCAGAAGTCAAGCAAACCCCAATGCGTATACCTAATTCGTGATCTCTGTCCTGAGATCTCCTGAAAATTAATGAAGCTCCTAGTGTCCCCACCAAGTGCCAGTTTTCACCATGGCATGGAGTTAACACTTACACACACCGTTTGTCTGATTGAGTGAAATAACATGTCTGATAATCTTCGTCCCAAAATAATGTGTACCTTGCACTGTGTTTAACTCATTGTATGGNCTTAG | |||||||||
gi|21162953|gb|BJ484507.1|BJ484507 BJ484507 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): CCGGGCTCAGCTCCGTTCTGAAAACCAAGAGCCAGAAGATCATGGACCAGATCAGCGAGCTAGAAAAAAAGAGGGTGCAACTGATAGAGGAGAACGCAAGGCTAAAGGAGCAAGCGTCCAAGATGGAGATGCAGGTCGCCGCTGATCCACTGGTGGTGGTGTACGATGAAGGGCAGTCATCTGAGTCTGTCACCAACACGTCGTATCCACGCCCTCCCCTCGACACCGAGGACAGCTCCGACACATCTCTCAGGCTCGGATTATCACTCTTCAACTCGAAGTGATTGGCTGGAAATTACCCGAAGCGAAGTGACGCTTGGTCACGACCAACTCCTGAATCGAACCACGCGCTGCATTGAATAAACAGTTTGAGCGCACTGGATGATGTGTGTAATCTAAAAGAAGACTGGCTTCTGTTATACTCCCTCCGTCTCAAAATAACTGTCTCAACTTTGTACTAGCTCTAGTACAAAGTTGTACTAAGCTTAAGACACTTATTTTAGGACCGAGGGAATATATAGCATAGTGTGGTACAATAAGAGAACAGGTTCTTGTGATATTACCTGCTACTGTTTTTTC | |||||||||
gi|18241528|gb|AV945731.1|AV945731 AV945731 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): GTTGGTCAGTTGCTTGAATCGGCGCTGCATGTAGCTGGCCAGGTTGCAGGGGCATCAGTTTCTACCTCCCCCCTCCCATACGGCACAATGACTAGTCAATGTGAGGCCCTGGGATCAGGCACTAGGAAGAAGCTATCAAGTTGGCTCGTGAATGGCCACAACTCGACTCCAGACAACCCTGTGCCAAGCCTTCCTGCTGCCGACCATTTCATCCTTCCCAAGGTAAATTCTTGTGGTTTTGAGATCAACCTTGCGTCATCGGAACCGTGCTCCATGGTGAAGCTTCCACCGGCCAGCCCCTTCGACAACTTCCTGAAGGCGGCAGCTTATCGCACCCAGCAGGAGATGTGATTACCCTTGCGGATCACAGCTGAGCTAACCATTCGGAAGAAGTGCTAGACTGTAGTATCTATCACTGAACACTAGTTTGTGTCGATGACTTGGCCGCCTGGCTGGCTGCAAGTAACGTGGTATCAGTTGTTGTAGCGTATGTATGACCATGTGTATCTACTAGTATTATGTACTCCTGCTTATCAACGGCTGTAGCGTGTGTGTGATCGCAGTACTAGATGGCTGTGACCTAGCGTGTCGTGTCTGTTGTCTGTAGCGAGAGAAGACTTGTTTTCGCACTAATGC | |||||||||
gi|21163029|gb|BJ484583.1|BJ484583 BJ484583 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): TACACCAAAGCCGGCTCAGTGGCATCGCATAGCTGTTCATAGCGAGCATCTAGGTGCTTATGCTGTTCAGAAGTTGGTGAAAAACTCTGCGGTATATATTGAGGGTGATATCGAAACCAGGATCTACAATGATGGAATTGATGGTCAAGTCAGGAATATACCGGAGATCTGTATTCGGGGTGATGGTAAGATTCGTCTGGTTAAATCTGGGGAGAGTGCTGCTAACATATCACTAGATGAGCTGAGAGACGGATTGTTCTAGTTAAAGCTATCGATGTCAGCACAAGCAGGTCATAACTCGTAACTAGCGGCGGGTTAAGTCGAGAATAAGGCGCTGCTTTGTTGAAGCCTTGAAGCATGACATGGATATTTGTTGCTCCTTCCGTCCCATAATAAACACTCTTATATTATGGGGCGGAGGGAATACATCTCAATCTTGGCAGAAGCAGTTAAATTTACCAGTGGATGCATGTAAGCCTTCCTGGAACCCGCTCGTGTGTTTTACCATGTTGCGGATGCTGATGGACGAACTGTTTTACGACGGTTGACGATGACATGATGTGCTGAAGATTGTTCAAGATAAGGCAGGTAGAACAGCGTAGGCGGCACAGAAGGCC | |||||||||
gi|21159440|gb|BJ480972.1|BJ480972 BJ480972 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): GGTTCCTAACATCTGCATTCCACTACTACACGAGNAAAAGGCCGACTAGCAAATACTCCCTCCGTCCAAAAATAACTGTATCAAGCTTAAAACAATTTTATACTAAAGCTAGCACAAAGTTGACACACTTATTTTGGGATGAAGGGAGTAGTACTCTCTCGGTAAAGAAATATAAAAGCGCTACTAGCACATTTTTTTCAGGAGTACTCCGTAGTACTCTCTCGATTCAGTTGTTTGTTGAAATCTTGAAATCATCCAGCAAGTCAGCAATTGCTGCCGATGAGGATCCACCCATCTCCAGCGCATTGGCAGCAATCTCTTTCGCCATCGTCATCCTCTGCCTGATCTCCTTCCCTTGCTCAGACTCCATGACCAGTCTCACCTTCGCCTCTACCTCCTCCGCTTTCACCATCACCTCGTCGTAGCCGTTCATGGCCACCCCAAGCTTCATCTCCTCCACGACGAACACCTTGTTCATCCTCTGCTCCGCGTACATGGGCCAGCACACCATGGGCACCCCGG | |||||||||
gi|21161007|gb|BJ482549.1|BJ482549 BJ482549 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): ATCTAGGCATGTGATCTGCAGGTACTCCCTCCGTCCCATAATATAAGGCGTTATTACATCCAATATACTCACATATTATGGGACGGAGGGAGTATCTAGTTGCTTCCTTTTGAATTAAAACTTTTTAACAACTAGAGCCGCTCTCTTCATCTCCTGAATACTCTTATGGGTGCATCATACCTGAAACCTCTCGTCTTTCAGGTTTTCCAGTTGCAAGTCGATAATGGTATCCCGATAAAGAGCTGGTTTGATGACCCCGCGGACCAGGAATTGGTTGAGTTACTCCCGTTCCTCGAGACCCTTGTTGATGCAGAGGACGTAAGGCCACTAATCTCAAAGACTTTTCACGGCACAATCCAGCAGGATTAGACTTAAGATGCATCCTTATCATGCACTGAGCCTGAGCTTGCCAGTTCCAGCGAGCTCCATCTTGGGAAATTAGGTATTAGGATCAGCATTCACCATTTATGTTATGTTGGCTGTTACAAATAGCAAGCATAAACTGCATGTCGCCATGGCTTGTATATGTAGTATTGTTCGGTTTTCTGTGTCGCAGGTCTTTGTACATAAACTATAGTAT | |||||||||
gi|14527897|gb|AV835808.1|AV835808 AV835808 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): TTCAATAGCAGNNTCAAATTAGNATGGTCATGTACATATTACATGGTACTCCCTCCGTCTTAAAATAATTGTCTCAACTTTGTACTAGCTTTAGTATAAAATTGTACTAAGGTTAAGACACTTATTTTGGGACGGAGGGAGTACATATAAGGCTCAACCAGNATTAATTTAGGGGAGGGGGGAGAGGACTGTACAATTTCTGACAAAATTGGAGATGAACATATCTCCTGATCACAAACTCACCCTGACGTCCGTCAGAAAGATGAAAACCTCAATGCTGGTAAGGCCTCAAAGTTTCTCTAGTTCACGTTCCATCGAAGCGAAGTCAAAACCTTCCCAATCAAGTCCTACATCCAACTCAAACATTGGCAACGGTAGATGGCTGATGTCTGCCAGCCCGATGTAGTCGTCGCCAGGCGGTTTGCCTGTTGTGTCAACGAAGTCATTGACATGAAACATATCTGCCAGCCTTGAAATATCATCCAGTGAGAGTTTGTCAGTTGTGCAAACATAGTCACTGATAGGAAGCTCATTTATCTGGCTGTGGAATGCATCCACTGGAATTTCTTCATCGCTAGGTGTCGATGAGCAGTGCACTAAGCTTTCATCAACATTCATCCGGCCAAGGAATGCATCTACCTCAATTTCTTTACCTGGCAGTTCTGGTGAGCAATGCAGTAAGCTCTCATCAGCAGTGTCAGGGTCTATCTCCATTGGCGCTACCTTG | |||||||||
gi|21163291|gb|BJ484846.1|BJ484846 BJ484846 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): ACAGTCAAGTTATGTGATTTTGGGCTCTCTCGGTTATTGTCGAATTCTGCAATGAGTGACAACTCATCTGCAGGCACTCCAGAGTGGATGGCTCCTGAGCTTATTCGTAACGAACCATTTACAGAAAAGTGTGATATCTTCAGCCTAGGAGTTATCATGTGGGAGCTTTGCACTCTGAGTAGGCCCTGGGCAGGAAAGCCGCCAGTTCAGGTTGTTTACTCTGTTGCGAACGAAGGGGCAAGATTGGAAATACCAGATGGACCTCTGGGTAGCTTGATAGCAGATTGCTGGACAGAACCGGANAAGCGCCCAAGCTGCCAGGAGATCCTCACTCGTTTGCTTGATTGCGAGTACACCTTATGTTGAGCTACCTAGCTCTAGTATGTATATCAGCTACAGGCAACACATTGGTTCGGTTTATATTCCCTCCGTCCCAAAATAAGTGCCGTTGCTTTAGTACTATATTTGTACTAACTTAGTTCTAAATTTGGGTCACTTAATTTGGAATGAAGGGAGTACATCATTTGCTTTCCCCCTTTTCACCATTTTGACATTTT | |||||||||
gi|14527271|gb|AV835182.1|AV835182 AV835182 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): CAGCAACTATTCAATCTTTGAGATCTCAGCTTCCTCTTCCTTTTCCTGCTTCGGCAATGCCTCCAGGGGCCGCAACCCTCATGCTGCTGCTACTGCTCGTGTAGGGGAGAGGAGGCCATGGCGCCATCACCATTGGCAGCCTAGACATGGACATGTCCATGGGGGTGGAGGCAGTGTAGATGGGCTCGGAGCCTGCGGCGCACGGGCAGCTGCTATGGGAGGCCGACGGCGGCGGCCGGAGGTACATTAGCTACGACGCGCTGCGGGGGGACGCCGTGCCGTGCTCCAGGCCCGGGGTGCCCTACTACAACTGTCGGGTCAGCACCACCACTAACCCCTACACCCGCTGCTGTGATTCCATCACCCACTGCCGCGACGACGACTCTTCCTAGGTGCTCCCTCCGTCCCAAAATTCTTGTCTTAAATTTACATATAAATATATCTAGTCACGTTTTAGTATTTACATACATTCATTTTTAGATAAACTTAAGACAAGAATTTTGGGACGGTGGGAGTACGTAACAAGTAATTGGCGATTAAAATTGCTGGATCCAGAGAGAGGGTGTTGCTACTCATTTTGTGTGTGCTTTAGTTTTTGG | |||||||||
gi|21164188|gb|BJ485746.1|BJ485746 BJ485746 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): CAATTCATGAAAAATGCTTGAAAGAAATGAAGGAGCATTGCCAATTCGCATGCCCGCTCTGCTCCAAGTCGGTGTGTGACATGTCAAAGGCATGGGAAAGACTGGATGCAGAACTAGCGACTCTGTCAAACTCCTTCGACGATAAGATGGTTCGCATATTGTGCAATGATTGCGGGGCGGTATCAGAGGTGCAGTTCCACTTAATTGCACATAAGTGCCATAGTTGCAAGTCATACAACACCCGGCAAATTTGAAGTAGTGAGCCATGGAGGGACTCTACGTTCTTCCTAGAAGTTGGCGAGCGCGCTCCAGCAGTGGAAATCGATTCATCTACGTGATGTTTTCCACGAAGGCAGATCACTGGACAGTTTATCTGCATCCTCCGCAGTTAGCTGCTGCCTTTTGTTTGTCCTTCATTTGTTTCTGCATGGTCTCCTTTTGTTCAGTGTGTAACAGCTTCCGCGTGACCGATCAAGCCTTGCATATTTTAGCACAACGCGGCATCTGGTAGAATTGTGTTCTACTCCCTCCATCTCAAAGTAAGTGACTCAAAAATGACTCTTCTCTTGAGTCATTTTTGAGTCACTTATTTTGGGACGGAGGAAGTACTCGATTGGTATCATTTCCAGCATTGGTCAGGACTGCAACCTATAGGATCACCACTCTGGCGAGTCNTGCTGCGTGCATGCAGCAGGCTGTGGGCATAGGGTTTAGGTTGCAAAATTTCTNATTCTCAATTTAAAT | |||||||||
gi|18239961|gb|AV944164.1|AV944164 AV944164 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): GCGTTCTAAGTTCCTGGTATACAAGCGCTGAGATTCTCAACTTTTGTGCTATTGTAATACTGATATTACCTTCTGCTGGAAAGTATTATTAAGTCAATGTTCTGGGAGAAGACGTTGAGTCAACTAGTTTGGTAATTTACCTGGCTAAGATGCAAAAGAGGGCATTTTGGATGCCTATAGTGGAAAAAGAACTGAGAAAAATCGTCTCGACGGGTTGTGTCAAGCAAGGAAGGTGTGACAACAAACACGCATTTTGATATTCTGGCAGTCTTTTGTAGTGTAATTTAGTACTTCCTCTGTCCCAAAATAACTGTCTCAAGCTTAATACAAATTTGTATTAAAGCTAGTATAAATTAAGACACTTATTTTGGGACGGAGGGAGTATCTAAGAGTATATTCTCGGTCCCTAGTAGTGATGTTCTAGATAGGACCAGTGGGGAAGCTACAAGATGTAATTTCCACTAGTGGGGAAGCTAGGAGATGTTCTAGATAGGATTTGGGGCTAACTACGTTTTTTTAAGGTGTAATTTCCACTAGTGAGCAATGAGAAAGACTAGATCACTGAAGGATGTATGGATTCGNATTGGGACCGAATAGNATGTAT | |||||||||
gi|21163294|gb|BJ484849.1|BJ484849 BJ484849 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTATTTTGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): GATTCAAAGACCAAGAAAGATGGTGGAAATGATCCCATGGACGAGAGTTGATTGCGGGGTGCACCTAGGGCTGTAGCCTTGATGTGAGTTGCTCATGCCGTCATCTGCGGTGGAAAGTATCAATTTTTAAATCTGATGGCACGCAAAGCACAGGACGTTTTATTTGGCACCCCCTCCGAATCTAGATACTATTTTGGCTGTGAATTTTAGATGCTTTCAGTCGCTTCCATATTTACCAGTTGATTCCGTGTCGTGACTTGAGTATTCTAAAAAATGCTTCCATAGGTTTCGGTTGGTACAATTGCGTGACATGGATATATTTTCAAAAATGCTTCTGAGGTTCTAGCTGGTACCGTTGTGCGACATGAATACATATGCTCTGTCTGTCCCAAAATAACCGTTTCAACTCTGTACTAGCTCTATGGTATCGTTGTGCGACATGAATATATATTCATATGCTCCGTCTGTCCCAAAATAACTGTTTTAACTTTGTACTATCTCTATTACAAAATTATACTAAGTTTAAGACATTATTTNGGACGGAGGGAG | |||||||||