| mature miRNA: GGCCGGGGGACGGACTGGGAA species: Ipomoea batatas database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|76296044|gb|DV035619.1|DV035619 BRS1110 storage root cDNA library Ipomoea batatas cDNA, mRNA sequence GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): ATTTTAAGGGAACCGTCNGANAATGTGCGCCTAGANGCGTCGNCGCTAGTATCATCCAAAGTGGAAATCAGAATCAAACGAGCTTTTTCCCTTCTGTTCCCACGTGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGCGAGCGAGCCTTGGGTCCAAAAAGAGGGGCATTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCTTTCGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTTGGCTGTTCGACGCCCGGNGAAGGCCCCCGAAGGAGCCCGTTCCAGTCCGTTCCCCGGCCGGCACGCGGCGACCCGCTCT | |||||||||
gi|76296148|gb|DV035723.1|DV035723 BRS1214 storage root cDNA library Ipomoea batatas cDNA, mRNA sequence GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): CGCCCTAAGTCTGGAGACTCGCGCGTCTTTGCAGGTCGACACTAGTGGNATCCAAANAATTCGGCACGAGGCACATTGCGTTAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTTGGCTGTTCGACGCCCGGGGAAGGCCCCCGAAGGAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGAAGCAGCTCGAGAGTACTTCTAGAGCGGCCGCGGGCCCATCGATTTTCCACCCGGGTGGGGTACCAGGTAAGTGTACCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGAGATCCAATTTTTAAGTGTATAATGTGTTAAACTACTGATTCTAATTGTTTGTGTATTTTAGATTCACAGTCCCAAGGCTCATTTCAGGCCCCTCAGTCCTCACAGTCTGTTCATGATCATAATCAGCCATACCACATTTGTAGAGGTTTTACTTGCTTTAAAAAACCTCCCACACCTCCCCCTGAACCTGAAACATAAAATGAATGCAATTGTTGTTGTTAACTTGTTTATTGCAGCTTATAATGGTTACANAATAAAGCATAGCATCACAAATTTCACAAATAAAGCATTTTTTTCACTGCATTCTAGTTGTGGTTTGTCCAAACTCATCAATGTATCTTAA | |||||||||
gi|195544244|gb|DC880065.1|DC880065 DC880065 sweet potato (Ayamurasaki) developing tuberous root cDNA Ipomoea batatas cDNA clone GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): TACCAGTTCTGAGTTGTCTGTTCGACGCACCGGGGGAAGGCCCGCCGAAAAGGAAGCCGCGTTCCCAGTCCGTCCCCCGGCCGCACGCGCGACCCGCTTCGC | |||||||||