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mature miRNA: TCGCTTGGTGCAGGTCGGGA
species: Ipomoea batatas
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|195546067|gb|DC881272.1|DC881272 DC881272 sweet potato (Kokei-14) mature tuberous root cDNA Ipomoea batatas cDNA clone IT253

TCGCTTGGTGCAGGTCGGGA
| ||||||||||| ||||||
AACGAACCACGTCGAGCCCT

EST sequence (targeted fragment marked with yellow):
CAACAGGAGGTACTACCCAAAGGAGGGAGAGGTAGCTGGGGACCTCAGCGTGGAGGACATGGTGGCCAAGGTGGTGAGCTCCACGAGGGGAATGGCTCCTCAGCAGTCCTATGGACACCCTGAGTATCAGCAAGGTAGGGGTGCCCAGCAATATCAGCGTGGAGGGGCTCCATTGCAGCGCCGTGGTGGCATAGGTGGGCNTGGGGCACCTTCTGTTGGTGGGCCTCCGAGGCCATTGGTTCCCGAGCTGCACCAAGCAACCCAGCTTCCATATCAAGCCATTGCAACTCAGCCCATGTCTTATCCTAGGCCAGTGGAATCTCCTGTGGAGGCTGGTTCTTCATCTAGACAACCTGAGCAAGCACAAATGACCCAGCAATTGCAGAAACTTACTCTGCAACCTGAAGCTGCTCCCACCCAAGCTATCCATCTCCCACCTGCATCCAGCAAGTCGATGAGATTCTTGTTCACGACCTGGAAAGAGTGGTACCAAGGTGCATTGTGAAGGCTAACCACTTCTTTGCTGAGCTGCCTGATAAGGACTTGCACCAGTATGATGTTTCAATCACACCTGAAGTTGCTTCTCGA