miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGAGCTTGTTTGGTGGCCACC
species: Ipomoea batatas
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|195545080|gb|DC882276.1|DC882276 DC882276 sweet potato (Kokei-14) mature tuberous root cDNA Ipomoea batatas cDNA clone IT3473

TGAGCTTGTTTGGTGGCCACC
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ACTCGAACAAACCACCGGTGG

EST sequence (targeted fragment marked with yellow):
ACCCTATTTGACAGTAGCCCATATGACCTGGGAATACTTGCTCATCATATGCCGGGTATTCTTTAGCATGACACAGAATACCAAGCCTTCGAGAGTCTGTGGCAAGAAAGAGATGACCATGAAAGAGGTCATATCGATTCAATGACACATTCAGTCCTACCTCAGGGCCTCGACTGACAATCATCTCAAACAAAAATTTTAGGTATGAATTTATCTCCTCATTTATGAAATGTCTCCCATAAGGAGTTCTAGTCAGCTCACCGATTTTTCTTTGACCCTTCGACATCAGGAACAGGGATAACTGTAGGGTCGAGTGCCCAATGAATAGACCCGGGATCACCACCAGAGTCAACGGCAAGGCGTGCGAGCTCCATCACCGGCTCCGGTGGCCACCAAACAAGCTCATTCTCCTCTTGCCTACCCTCGGAACCACTCAATTTCAAACCCAGCGCGCTCCAGGCTTGCGAGGATTCGTATCTG