| mature miRNA: TGCATTTACACCTGCACCT species: Ipomoea batatas database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|120446455|gb|CO500944.1|CO500944 KH01016E07 KH01 Ipomoea batatas cDNA, mRNA sequence TGCATTTACACCTGCACCT EST sequence (targeted fragment marked with yellow): CCTGAGAAGTTTCGCACAGAACAACCACAGCGAGTGTGTGATGTATGCTCTGTACGTCTTCAGTCAGTCCAGGCATACTTAATGGATCAAGTAAGCCGTGCTGCACAGTTGCCAACCCATGATTTGACAGATCTCAGCACACTAAGGTCCTGGATAAATTTCCCATGGGGACAGTCAATGGAGTATGAAATTTACAAGGCTACCAACACAATTCGGAGCTATAATACGGTTGGTTCTTTGGGGAATGAGAAGAGAATTCCAGAAGCTATTCTTCGTGGTGCTCATGGCCTTGCAATACTCACAGTACTGAAAGTTGGAGTTATGGTTACGTACAACATTGGAACTGGTCTGGTAGTTGCTCGGAGGGAAGATGGCTCATGGTCTCCCCCCTCAGCCATTTCTTCTTTCGGTGTGGGATGGGGTGCTCAGGCTGGAGGAGAGCTGACTGACTTCATAATTGTTCTTGCAACTAATGATGCCTGTGAAGACATTTAGCGGTGAGGCACATATTTCAATTGGAGCAGGTGTAACTGCACCTGCAGGAGTCATTGGACGAACAGCTGAACCGCATGTACGTGCTGGTACTGGAGGCTA | |||||||||
gi|120445257|gb|CO500042.1|CO500042 KH01003H02 KH01 Ipomoea batatas cDNA, mRNA sequence TGCATTTACACCTGCACCT EST sequence (targeted fragment marked with yellow): CCCTGTCTGAGCAGAGCCGCGAGGAGTTCCCGAAGCTCTCTTCTCCAGAAAAATGACTTTCAAGCGAAGGAACGGAGGCCGTAACAAGCACGGCCGTGGCCATGTCAACTTCATCCGCTGCTCCAACTGCGGCAAATGCTGCCCGAAGGATAAGGCCATCAAGAGATTCCTTGTCAGGAATATTGTTGAACAGGCTGGAGTCAGGGATGTCCAGGAGGCTTGTGCCTTGGATTCTTACACACTTCCCAAGCTGTACGTGAAAATGCAATACTGTGTGTCTTGTGCAACTCACTCCAAGGTCGTTAGGGTTCGTTCACGTACTGATAGAAGGGTCCGTGAGCCTCCACAGCGTTTCAGACGCCCAAGGGATGATCAGCCAAAGCCAGGTCAAGCCCCACGACCTGCAGGAGCACCAACTGCTGCCC | |||||||||
gi|28879714|gb|CB330585.1|CB330585 SpEST549b Sweetpotato cDNA library Ipomoea batatas cDNA 5', 3' similar to ribosomal protein S TGCATTTACACCTGCACCT EST sequence (targeted fragment marked with yellow): TCGCTGTTTGCTGGAGAAACCCTGTCTGAGCAGAGCCGCGAGGAGTTCCCGAACCTCTCTTCTCCAGAAAAATGACTTTCAAGCGAAGGAACGGAGGCCGCAACAAGCACGGCCGTGGCCATGTTAACTTCATCCGCTGCTCCAACTGCGGCAAATGCTGCCCGAAGGATAAGGCCATCAAGAGATTCCTTGTCAGGAATATTGTTGAACAGGCTGCAGTCAGGGATGTCCAGGAGGCTTGTGCCTTTGATTCTTACACACTTCCCAAGCTGTACGTGAAAATGCAATACTGTGTGTCTTGTGCAATTCACTCCAAGGTCGTTAGGGTTCGTTCACGTACTGATAGAAGGGTCCGTGAGCCTCCACAGCGTTTCAGACGCCCAAGGGATGATCAGCCAAAGCCAGGTCAAGCCCCACGACCTGCAGGAGCACCAACTGCTGCCCGTACCTAGACGCCCCTTGTGTTATTTTGTTCTCACTAGACTGTTTCCTTTTACTCTCAAGGGAAGCTATGGAGTTAATATATGTTGGTTTTGATGTTTCTGTCTGCTAAGGTTTTGGACTAAATGTCACATTATTCCTCTATGTTTGTGACACAACAGAGATTACAGTTCTATGAATTTTGACAATTTCCATAGTGTTTTCTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|114784653|gb|EE881278.1|EE881278 sp_d25_39 Sweetpotato cDNA library D Ipomoea batatas cDNA 5', mRNA sequence TGCATTTACACCTGCACCT EST sequence (targeted fragment marked with yellow): GGGGGCTGTTTGCTGGAGAACCCTGTCTGAGCAGAGCCGCGAGGAGTTCCCGAAGCTCTCTTCTCCAGAAAAATGACTTTCAAGCGAAGGAACGGAGGCCGTAACAAGCACGGCCGTGGCCATGTCAACTTCATCCGCTGTTCCAACTGCGGCAAATGCTGCCCGAAGGATAAGGCCATCAAGAGATTCCTTGTCAGGAATATTGTTGAACAGGCTGCAGTCAGGGATGTCCAGGAGGCTTGTGCCTTTGATTCGTACACACTTCCCAAGCTGTACGTGAAAATGCAATACTGTGTGTCTTGTGCAATTCACTCCAAGGTTGTTAGGGTTCGTTCACGTACTGATAGAAGGGTCCGTGAGCCTCCACAGCGTTTCAGACGCCCAAGGGATGATCAGCCAAAGCCAGGTCAAGCCCCACGACCCGCAGGAGCACCAACTGCTGCCCGTACCTAGACGCCCCTTGTGTTATTTTGTTCTCACTAGACTGTTTCCTTTTGCTGTCAAGGGAAGTTACGGAGTTAATATATGCTGGTTTTGATGTTTCTGTCTGTTAAGGTTTTGGACAAATGTCACATTGTTCTTCTATGTTGGTGACACAACAAAGATTACAGTTCTATGAATTTTGACAATTTCCATAGTGTTTTCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||