| mature miRNA: GGAATCTTGATGATGATTCCT species: Ipomoea nil database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74401118|gb|CJ755938.1|CJ755938 CJ755938 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf10p06 3', mRNA sequ GGAATCTTGATGATGATTCCT EST sequence (targeted fragment marked with yellow): TCTCTCAGACACCCTTCACTTACTACTACACCTTGAAGGAATACAAATACCTAAAGTGTTTAGCACAGCTCCCCCCTCCTTACCTTCAAGTCCCTTGCCTCAGTGTTTCTGGCTTCCATTTTTACATTGTGGAGACATGTATGAGTGTTCCAATATCTTGCCAGCATGTGAAGACTGTGGCCATTCCGTTCTCGTATAGTCCTTACTTGAATGATAACAGTTTTGGGCTGAGATTGAGTTGGAAGATGAGTGGTGGTGGTGAAGAAGCTGCAGGGCACCATGGAGGAATGTTCATCAAGATTGCAGCTTATCAAGTGTTGGTGGTTGCCATGTTTATATTGGTTGCTATGGTGGTGTTATATTATGTGAGGACTTCTAAGTCCAAGAAATTAAGCTCAGAGGAGGAGATGAAGATGGAGAATAATGGAGATGATGAAGTAGTGAAGGTTGAAGCATTATTATTGCTAGGAGAATATGAAGTTGTCCCCTCAAGCCCTAGCAAGGGGAGACTCAATGTTTCATGTCAAGCTATCTAGTTGATATGATGATGACTCACCAAATGCCAACTACATAAGGGCATGAGACAAGCAATTAGATATCTACATATTCAAATAAGAAAAATAAAAAAGAAGAAGAAGAAATATGTAAACCGTTTAAATTTTTGCAATAGAATGCGTTTTACCATGTAAATGAATACATATTTAATTTGAGTTAATACTCAAAATC | |||||||||
gi|27249077|gb|BJ567257.1|BJ567257 BJ567257 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm13l20 3', mRNA GGAATCTTGATGATGATTCCT EST sequence (targeted fragment marked with yellow): CGACTGAGTTCAATTTAATTAGGGTATATATTTAAAAGCTCCCCAGTTTTAGGGAGCTAGCGAGGCGGGACTAATGATGGCTGGCGAGGAGAGGAATCTCATCGAGATTTTAGAAGAGAATCACCCTATAGACTTCAACAAATATGTCAGTTACGTTCAGTCCCCACAGTGTGGTGCTATAGCCACTTTTGCTGGCACAACTCGGGATACATTTGATGGCAAACAAGTACTAGAGCTTAGATACGAGGCATACACTCCAATGGCAATACGGTGTATCCAGTCTATGTGCTCCTCTGCTCGATCAACCTGGAATCTCCACGCAATTGCCATTGCCCACTGCCTGGGGCCCGTTGCAGTCGGGGAGACCAGCGTATATGTTGCAACATCAGCTGTTCACCGAGCAGATGCGTTGGATGCGTGCAAATTCCTGATTGATGAGATCAAAGCTTCGGTTCCCATTTGGAAGAAGGAAGTGTATACTAATGGAGAGGTCTGGAAAGAAAACAAAGAGTTCCTGGAGAGAATGCTGGATGCTGAGAATTTGACAGAATCACAGGGCATTAAAGTTGAGGCTCATGATAAAAAGGGGTGTTGCTGTGGGACAAAGGTTAGAATTGATGATAAAACTGCTGATTCCTTCTAGGTGACCCCTACCCATCATATTTAAAAAGAATAAAGATAATAGTTTCTACCCAATTTCCTTTTATTCTNTGCAGAC | |||||||||
gi|74409594|gb|CJ764414.1|CJ764414 CJ764414 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf33h01 3', mRNA sequ GGAATCTTGATGATGATTCCT EST sequence (targeted fragment marked with yellow): GGAGGAGCGCCGCCGCAGCGTCGCGCTCAGCAGGCCGATGCCCGGGGTGACGTCGAAAGGCGCCGCCATTTCTTCCATGTCGGCGCTGTGGTTGGTCCCCCAGCTCTCCCTGGCGGGGCTGGCGGAGGCGTTCACGGCCATCGGACAGGTGGAGTTTTACTACAAGCAGTTCCCGGAGAACATGAGAAGCGTCGCCGGGTCCTTTTTCTTCTTGGGGATGGGGGCCTCCAGCTATCTCAACAGCTTCTTGATCTCCATTGTACATAGAACCACAGAAAACGCCAAAACTGGAAACTGGTTGCCGGAAGATCTCAACAAGGGAAGATTAGACTACTTCTATTTCATGATCACAGGCCTGGGAATCTTAAATGTTGTGTACTTCCTAGTATTTTCCAGGTGGTATGAGTACAAGGATGGAACTGAAGGAGCCATTAAAGATACTGAAATGGAACCAAAGAATCTTGACAACAAACATGCAGTTTAGTTTAAGATGGCTGTTGGATTCTGGTATAGGATAGTTTGAATCTGACAGTTAGTCAGTTATTGTCCCTTATCAAATGAGGATCTCTTATTAGGAATCATCATCAAGATTCCATTCTTAAACAATAAGTGACTTTGTTAGGATAGAACTTAACTATCCCATGTAAATTCTATTCTAACAAAATCACTTGCTGGTTAAGAATGGAATCTTTATGATGATTCCTGATATTATGTGCCATGTC | |||||||||
gi|74398945|gb|CJ753765.1|CJ753765 CJ753765 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf42b05 5', mRNA sequ GGAATCTTGATGATGATTCCT EST sequence (targeted fragment marked with yellow): GGCTTTTTTCTCAATTTCTTCTCTACTCTCTACTCTAATAATATAGAGTAGTTGTCTCCGTCAAGATTCCATTATATATTTAAACTGCTATCTGTTTCAATTATTGCGTATGTATTTGAGTTGATCGCTTAGACGCAGAATTGGGGTTCTCGAGAACAGATAAATAAAAAAAAATGGGGATTTCATCAAGATTCCAAATGGACAGGCCGTTCTTGATTGCTTCTCCTTATGAGGAAGCAAAGATCCGCAGGAGTCAAGAGTGTACCCAAGAGGGTGTTCGTGCTGGCGCCAAGGCTGCTGCAATTGCATGTGTTTCCAGCGCTGTTCCAACATTGGTTGCTGTCCGAACGATTCCTTGGGCGAAAGCAAACCTCAATTACACTGCTCAGGCACTTATTATATCTGCAGCTTCCATTGCTGCATACTTCATCACCGCTGACAAAACAATCCTGGAATGTGCGAGGAGGAACACCCATTACGACAAAACAACCTAAGGCGATGACATAGTAGTTGTGCTCTCGACCATGCCAGGTGCTGTGTTGTATCAGAGGAAAGATGATCAAGATCAACTCTTCTTATCCTTTGTGTACCTTCAAATAATGAAGTATTATGTTTTTTTTTTTTTGGG | |||||||||
gi|27258960|gb|BJ577132.1|BJ577132 BJ577132 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm34c04 3', mRNA GGAATCTTGATGATGATTCCT EST sequence (targeted fragment marked with yellow): CACAATGNTGCATGTTATTAGCAGGCTAGTGCCCNCCTGTTGGTGAAGAGTCCCAAGAACAANTAATGGGCATTCTTGGAATTGACAAGGTGAAAGTGGAGGAATGCCAGAAGNTAATCAAGGAAGTAGCATCAAGAATCCAGTTTGAATCAGCTTATAAAAGGAAGTATGGAGCAATGCCAGGGAGCCCTAAAGGTGTGATGGAAGTGTCATTTAGCTCATCATCATCATCATTATCATCAGACAGCTCCAAAGATTCCTGGGCAGTGTCTGCTAATGCTTCTTCATCTTCTTCTACCTCTGCAACATCCTCAGTTTCTTCATCCCCAGAGCCATTGTCCAAGAAGACAAGGATGATGTCTCCTCAAGAACATCAAAACTCCCCCACCATCACCCCTCAACATATTATTAATCATTAATCTTGTCCTTAATATTTCCTTAATTTTAGACTAAATAATAGCTAGGCACCTCATCTCATCAGCTCCCTGTTCTTGTTTATTTGTTGGTAACATGTTAAATTGCCCACCATCTTTGCACAATTTCAGTCAGTCCAAGCCCCTCTTCAATGGTAGGGTGCTACATTATATTATATTTATGATGGGGCATGGAGATTTGGACCCCCTCCTAGAGGTGGAGATGGTATGCATTTTTTCCGGAAATATATACCTCAAATATATATATACCATTTCAATAAGAG | |||||||||
gi|74415705|gb|CJ770525.1|CJ770525 CJ770525 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf40d01 3', mRNA sequ GGAATCTTGATGATGATTCCT EST sequence (targeted fragment marked with yellow): GAAGCCATGGATGAGTCAACTCGCTGCTGTGGCTTGTCTCTCTCTTGCTGCTAAAGTTGAAGAGACCTTTGTCCCTCTCCTCCTAGATTTCCAAGTTGAGGAATCGGAGTATGTGTTTGAGGCGAAAACCATCCAAAGAATGGAGCTTTTAGTACTCTCGAATCTTGAATGGAAGATGAACCCTGTGACTCCATTCTCGTTTCTTGATTACATTGCAAGAAGGCTTGAGCTGAAGAGCCATCTCTGTTGTGAATTCCTTAGGAGATGTGAGGGTGTTCTTCTCTCCATCATTTCTGATTGCAGATTCATGTGTTACCTACCCTCTGTAATGGCATCTGCCACAATGCTGCATGTTATTAGCAGGCTAGTGCCCACTGTTGGTGAAGAGTCCCAAGAACAACTAATGGGCATTCTTGGAATTGACAAGGTGAAAGTGGAGGAATGCCAGAAGCTAATCAAGGAAGTAGCATCAAGAATCCAGTTTGAATCAGCTTATAAAAGGAAGTATGGAGCAATGCCAGGGAGCCCTAAAGGTGTGATGGAAGTGTCATTTAGCTCATCATCATCATCATTATCATCAGACAGCTCCAAAGATTCCTGGGCAGTGTCTGCTAATGCTTCTTCATCTTCTTCTACCTCTGCAACATCCTCAGTTTCTTCATCCCCAGAGCCATTGTCCAAGAAGACAAGGATGATGTCTCCTCAAGAACATCAAAACTCCCCCACCATCACCCCTCAACATATTATTAATCATTAATCTTGTCCTTAATATTTCCTTAATTTTAGACTAAATAATAGCTAGGCACCTCATCTCATCAGCT | |||||||||