| mature miRNA: GGGATGTTGGCTGGCTCGATG species: Ipomoea nil database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27254413|gb|BJ572585.1|BJ572585 BJ572585 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm21c24 3', mRNA GGGATGTTGGCTGGCTCGATG EST sequence (targeted fragment marked with yellow): AAGCTTCACTTCTTGGTCCACACCAGCGCTGCCGGGCAAGAAAAGGGGAGTGGACCTCCTGTTGCGGTTGAGGACTCTACTCTGAGCTCCGGCGCCGGAGGTTGTCAGCAAGTTCCGAGATCCTCGATGGGTTGGAGGGAGTTGGGAGTTGCGTCAGTTTCAGACCGATGGGGAGACCAATTGGGATGGTGTGATTGATGCCGAGGTTAAGAGGAGGAAATGGTTAGAAGATAACCCGGAGACATCGAGCAGCCAAGATCCTGTGGTTTTTGACACTTCCATTATTCCTTGGTGGGCATGGATGAAGAGGTTCCACCTTCCTGAAGCTGAAATCCTTAATGGGCGAGCTGCAATGGTAGGATTCTTTATGGCTTACCTGGTTGACAGCTTGACCGGATTAGGCCTAGTGGATCAAATGGGCAATTTCTTCTGCAAAACCTTGTTGTTTGTAACAGTAGGTGGAGTTCTTTTGGTCCGAAAGAATGAGGACATAGAAGCACTGAAGAAGTTTCTAGAGGAGACAACATTCTACGACAAGCAGTGGCAGGCAAGTTGGAAAAAAGAGATTTCCACCGACTCTAATTGATTATTAATTAAGCTTTAATCTGTTGTATAAGCTAAGGTTTCAGAAATTTTATAT | |||||||||
gi|27247762|gb|BJ565942.1|BJ565942 BJ565942 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm9m10 5', mRNA GGGATGTTGGCTGGCTCGATG EST sequence (targeted fragment marked with yellow): GGTTGCATTCATTTTTATTATCGTACTTAGCTTGGGTTATTATATGATTCTGAAATTGAGGTGCCGGTCCTCCGATGATAAGGTTGTTCCTACGAACTGGGCAGTAGTGGGAATGATGCCGGCGCTTCTTAAGAATGCTCACCGAGTCCACGAATTCGCGACTGATGTTCTGAGACACAGCGGAGGGACATTTGAGTTTAAGGGTCCAGCTGGCTTTGATAGCTTGAGCATGCTGGCTACCAGCGACCCAGCTAACATCCACCATGTCCTCAGCAAAAACTTCTCCAACTATCCCAAAGGACCAGAGTTTCGAAAAATATTTGATATTTTAGGAGACGGGATTTTCAACGTAGATTCCCAGTTGTGGGAGCTTCACCGTAAAACCACCCTCTCCTTCCTCAATCATGCCCAATTCTACACCTTGTTACAGACAAATGTGTGGCACAAGGTAGAGAAAGGTTTGTTGCCGGTTCTTGATTGGTTTGCAGAAGAGGGAGCGGAGTTTGATTTGCAAGATGTTTTCCAGCGCTTCACCTTTGACGCCATTTCGAAGCTCGTCTTACACCATGACCCTGAAAGTCTCTGCCTTGGCTTGCCTTATGTTCCCTGCGAG | |||||||||
gi|27236462|gb|BJ554642.1|BJ554642 BJ554642 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm14n11 5', mRNA GGGATGTTGGCTGGCTCGATG EST sequence (targeted fragment marked with yellow): CTGTTTGCATTTCGTCCCTGTCAATAATCTTTACAGAAATCGCAGCCAGCCAGCCAAAATCCCCATCAGTTTAACTCTGGAAGCAACCTCCGCTCTGTGTATGACTTCATAGAAAGCGAAACTCTCTGCACTCCATGTCTTCTTCTCTGCTTCTCTCTCGGCTTCCTGGTCCGGCCACCGCCGGGAACAACCGCGACTTGTGTTCTTCTATAAGCCTCCACAAATCGAGTTTTCTCTCCTCCCAAAACCTCATATTCGCACCTTCTGGGCGCAGCCCTAGAGCAAAAAATGGTGTGAGAGGAGGATGTCCGTACATGTCTCCCGTAGCTTCTTCTAAGTCTCTCGACCACATACCCAAACAATTCCGAGAGGAGAATCTCAAAGAAGGGTTGATGGAAAACTATAAAAATGTGCCTCAGACTCTCTATGGCCTTACTCCATCACAGATGGATTTGTTCCTGAAAGAAGATGGCCATGTGCATCGGCAATCTGAAAGTGTCACTGAGGAAAGCATATCATCAAGACACAATTATCTGAACAA | |||||||||
gi|74417726|gb|CJ772546.1|CJ772546 CJ772546 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf45p18 3', mRNA sequ GGGATGTTGGCTGGCTCGATG EST sequence (targeted fragment marked with yellow): TTCCATCAGTACCAGGTTGTCGGAAGAGCGCTCCCGTCGGAGACCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCAACCAATGAGGTCCGTGCCAAGTCCAAGTTCTGGTATTTTTTGAGGAAGCTGAAGAAAGTTAAGAAAAGCAATGGCCAGGTCCTCGCTATCAATGAGATATTTGAGAAGTGCCCTACCAAGGTTAAGAATTACGGGATATGGTTGAGGTACCAGAGCAGAACCGGGTATCACAATATGTACAAGGAGTTCCGTGACACAACCTTGAATGGCGCTGTTGAACAGATGTACACTGAGATGGCTTCTCGTCACAGGGTGCGCCACCACTGCATCCAAATCATCAAGACAGCCACCATCCCAGCAAAACTCTGCAAGAGGGAGAGCACCAAGCAATTCCACAACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAGGTGAGGCCACCATCCAGGAAGCTCAAGACCACATACAAGGCATCTAGGCCCAACATCTTTGTGTAACTTGTTTGGTCTAATACTGTGTCTCATTACCAGTTTCCTTGTTCTGCAATTTTAGACCTGTTTAAGTGAAAGATTGTTATCTGGAGAAGAAAAAGGGAGAT | |||||||||
gi|27260347|gb|BJ578519.1|BJ578519 BJ578519 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm38i16 3', mRNA GGGATGTTGGCTGGCTCGATG EST sequence (targeted fragment marked with yellow): ANCCAATGAGGTCCGTGCCAAGTCCAAGTTCTGGTATTTTTNGAGGAAGCTGAAGAAAGTTAAGAAAAGCAATGGCCAGGTCCTCGNTATCAATGAGATATTTGAGAAGTGCCCTACCAAGGTTAAGAATTNCGGGATATGGTTGAGGTACCAGAGCAGAACCGGGTATCACAATATGTACAAGGAGTTCCGTGACACAACCTNGAATGGCGCTGTTGAACAGATGTACACTGAGATGGCTTNTCGTCACAGGGTGCGCCNCCACTGCATCCAAATCATCAAGNCAGCCACCATCCCAGCAAAACTNTGCAAGAGGGAGAGCNCCAAGCAATTCCNCAANTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAGGTGAGGCCACCATCCAGGAAGCTCAAGACCACATNCAAGGCATCTAGGCCCAACATCTTTGTGTAACTTGTTTGGTCTAATACTGTGTNTCATTACCAGTTTCCTTGTTNNGCAATTTTAGACCTGTTTAAGTGAAAGATTGTTATCTGGAGAAGAAAAAGGGAGATTAACTTCTATCATTATTTNGATCAAATTTTCTAGTTTTACTATGAAGGTACCTATATTTAGCTACTTTNTACATGTGTTCGATAATCACAACTATGAATTGCTTATGCTTCATATTT | |||||||||