| mature miRNA: GTATAGCATCATGAGCAATCA species: Ipomoea nil database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74404377|gb|CJ759197.1|CJ759197 CJ759197 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf1h12 3', mRNA seque GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GCTAAAGAATGGCTTTGATGTTGTGAACAAGGAAATGGGGAAGCATGACAGGGGATGAACTCGAATCTCAGCGAGTACAATGGAATCAACCCGAGCGAAGAGTATATAATGAGGGTGTTTGCTGATAGAAACTCATCAGTTCATGTCAGGGGAAACAATGGTGGAGGAGCTATGGAGGATTCCAATCACGACATGGGCGTCTCTTCGAATAGGTTTCTGTCGTCTAGTTTGCCTAGAGTAGGGAAGAGGATCAGCGATGGCAGCAGCGGTGTAGGGTGTAAACGGGAGAGGAATTCAGTCGATAGCGTCGACCAAATCGCTGCCTCGATCAGGTTCTTGGGAGAAGGGTTCATGAAGATCGAGAAGATGAAAATGGAGATGGCGAAGGAGATGGAGCAAATGAGGATGGAGCGGGAAATGAAGCAGAGCCAGATGATACTCGAATCCCAGAAGCAGATGGTGGATTGTTTCATGACGGTGTTGAGTGAGCTCAAGAACAGCAAAAAGGCGAAGAAGACAGGAGGCGAGCACGGGCAGGAATCATAGTCCAGGATTTCTCCATTGATATGAGTTTGGATTTGATGTTTATGATGCTATATATGAATCAGGTTAGTGCAAAATGCTGAATCTGCTACTAGTTTTAGTAACTTATATTATCATCATTGAGAGGTATATGTAGCTTCTGTAGCCATGACAGTTATATGTAACATAGCATAAGGTTTGCCTGAAGGAAGCT | |||||||||
gi|74391762|gb|CJ746582.1|CJ746582 CJ746582 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf34p05 5', mRNA sequ GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GATTGGATGCTCCCGTTTTCGCCCCTCTAGAACTTTCGCTCTTCCAGCTCGGCGCTCCGAACGAAATAAGGCGCTTCTTTTATCGTTCCGGTGAATCATCGGCAAGTACAGACGTAGATAGTCTGCTACTATCATTCACGTAGCCGTTTTCATACGTCATCTTGGAACAATGGCCACCGTGATGCAGAAAATCAAAGACATCGAAGATGAGATGGCAAGGACTCAAAAGAATAAAGCTACTGCTCATCACCTTGGCCTGTTAAAGGCTAAACTTGCAAAACTGCGAAGGGAACTTCTTGCACCTTCGTCAAAAGGTGGTGGTGGTGGTGCTGGGGAAGGTTTTGATGTTACAAAAAGTGGTGATTCTAGAGTTGGTCTGGTGGGCTTTCCTTCTGTTGGAAAATCTACACTACTGAACAAGTTGACAGGCACCTTTTCAGAGGTAGCTTCATATGAATTTACAACCTTGACTTGTATTCCAGGAGTGATCGTGTATAGAGGAGCTAAAATCCAGTTGTTGGACCTTCCTGGTATCATTGAGGGTGCTAAAGATGGAAAAGGTAGAGGAAGGCAGGTTATCAGTACTGCTAGGACGTGCAATTGCATTCTGATTGTTCTTGATGCGATAAAACCAATTACTCACAAGCGCCTGATA | |||||||||
gi|27258558|gb|BJ576730.1|BJ576730 BJ576730 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm40o23 3', mRNA GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTCTCCATTTGGGAAGACTGACACTGCTTCTGTCTTGTTAGAAGCTATTGGGTACATTAGATTCCTTCAAAGCCAGATTGAGGCCCTTAGCTTGCCCTACTTGGGCAATGGATCAGGAAATAACATGAGGCATCAACAACAGTCATTTGTGCAAGGTGCAGAGAGGAATAGTTTATTCCCTGAAGACCCTGGTCAGCTCTTAAATGACAACTGTTTGAAGAGGAAAGGAACATCTGATCATCATCAGCCGCAGGATGGTGATGAAGAAGCAAAGAAGGATTTGAGGAGTAGAGGGTTGTGTCTTGTGCCGATATCATGCACGCTTCAAGTCGGGAGTGATAACGGGGCGGACTATTGGGCTCCGGCGGCTTTCGGGGGAGGAGGTTTCCGATCATGAAACTTAAGATCATATCAGATCAGAGTACAAAATTAAAACTACGTATAATGTGGTTACATTACGTTAAGTTGATTATTATCCCACGTTGCGTACAGCACACTAAAAATTATTAACCTACTAGGGAATTAGCTAGAGAAATTATATTAGCTATAACATCATGAGCAGTCAATCTGCTAAGATTCCAAGGCTGATTGCTCATGATGCTATACATTCTTAGTATGTTCGGATAATTTTAGGTGTGCTGTATTAATTATGTATAATTATTATTATTATTATGTATTATTAATTCTGATCGATCTTTCACAACTAATTAAGTCATTAAGATCATTAT | |||||||||