| mature miRNA: TTGGACTGAAGGGAGCTCCCT species: Ipomoea nil database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74411260|gb|CJ766080.1|CJ766080 CJ766080 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf3d20 3', mRNA seque TTGGACTGAAGGGAGCTCCCT EST sequence (targeted fragment marked with yellow): TTGATTACGTCACCACCGGAGGATTAGCAACCGCCCAACCGTCCTCCCCGGATTTTCCGCCCCAAGTTCATCTCGGAAACCCTCTACATCTCCCTCCTCCTCCTCCGCCGCCGGTGTTCACTATTCCCGGCGACCACCACCCGGAGCTGCAGAATTTCTCCTTCGTCACCGACCACCGCCACCACCACCACGGCAATCACAACGAATACAATCTAAACTTCAGCATTTCGTCTCCTTCGTCTCATTCGGGCCTTGCTGCTTTTAGGGGGACCCTTCAGTCCAATTCTCCTTCCTCGCCTTCTCTCTTGCCTCACCTACAGAGGTTTCCGGCGGCCGTAGACTTAACGCCGGCAAGTTTCTTCACCGCCGCTGCACCCACTGCCCCAGTCGACAACCACCACCACTTCCTCGGATTCGACGCCCGTTTGCAGCTCTTCTATGGCGACCACCACGCAGATCATAACGGCAAAGGAAAAACCTGAGCTCATAAAAGCTCCGCAGATCTCCTCTCTACCTCATCTTCAAACAAGGTGATTGAAGGTGAATGAATGTACTCAAAAGTCTCAAGTGAAGCAAGCTTCCCTGCCTGCAACTTCTTATTATGCTTCTAAAATCATTATTATGATTTCTGGATTTGTTCATTTCAAGCAATTCAGTTCGCATTCATGTATTCATGCCTGTCAAGTTGTGTTGTATTTTCTTGATATGAAATAATGTGTTTGCT | |||||||||
gi|74389398|gb|CJ744218.1|CJ744218 CJ744218 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf29e16 5', mRNA sequ TTGGACTGAAGGGAGCTCCCT EST sequence (targeted fragment marked with yellow): GACTGCGATTAAGCAACCTTTCATTCTCATCTTCTCATTATCGCAGCCTTTGCCTCTTTCTGCTGCAAAGAAATCTTATGATTATTGTTTATTTCTTTCATTAACATCCTATGTGGTTTCACCCACCAACCATTTTTTTCTTAATTTCTGTTCGAGGTTTATATATGTGCATGTTTGAGTGTGGTGTAATAAAAATTATAAAAAGAAAAAAGAAGAGAGCTTTCTTCAGTCCAAACATGGGTGGCAGTAGGATTCAATTAGCTTCCGACTCATTCATCCAAATGCTGAGATGAGATGACGATGAACCCGGCCTTGATGACTAATGAACACTGTCTCAGTAACTGAGTGAATGATGCGGGAGACAAGTTGGATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTCCCTTTTTAACCTTTAATTTTATTTTTCTGTTTATTGCACTTATTTTTACCTTTAATATCTGTCTCTTTGCTAAGTTTCTGCAGATTCTTTGTTCCCTTTTCCACACTAATCGATCTGCCCAGCCAGATTCTATTTGGTTTGGTTTAATTTGTTGGTGTTTGCCAGTTACATATATAAATACACACATATACGTATAATTAAGTTTCAATTATTTCTGCATATTAATCTTGAAGGCTGGAGAAAGGGTTTTTCATTGGTTAAAATNAGGGTTTTCGCCATTACTTATGCGGTTGAA | |||||||||
gi|74413284|gb|CJ768104.1|CJ768104 CJ768104 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf51h08 3', mRNA sequ TTGGACTGAAGGGAGCTCCCT EST sequence (targeted fragment marked with yellow): TTCAGACCATTTAGCCCCTGCCGGAAATAATGGCAATGGCCAACAAAACAACAACGAGTACAACCTAAGCTTCAGCATTTCGCCGTCTTCTTCATCTTCCGGCCTTCCTGCCGGTCTTAATAGGGGGACCCTTCAGTCCAATTCTTCTTCCCCGTCTCTCCTGCCTCACTTCCAGAGGTTTCCTCCCTTAGACGGATCGTCACCGGGTTTCTTCACCCTCTCCACCGCCGACAACCACCACCACCACTTTCTGCCCCGATTCGACGCCCGTTTGCAGCTCTACTACGGGGACACCCACACCGCCGCCGCCGCTCGCCCCTCTTCTGACCACAAGGGAAAAGGAAAGAATTGATTTTCATTCAACTTTCACTTCCTCTCAACCCCCCATCTTCAAACCTGGTAAGTGAAGATGGAAGTGGGAACTAATGTGAAGAAGCTTTCTGGTTTCCCCTTGTGAAGTTGCGGCGCTTATTGTAATGGTAATGGTAATGGTAATTGTGAGATGGGATTTTATCCTCCATTACAAAGTATAAATTATTGTGAGGCACCCAAAAATATAATATTCCCAGGCAGGCATCCATGCATTTTGGTGCTTTTATGATGGCTGGTGCCCAGTAGCAGTCCGGTT | |||||||||