miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCTTTCCTACTCCTCCCATT
species: Juglans hindsii x Juglans regia
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|133869327|gb|EL900630.1|EL900630 CGF2003232_D07 WRO-02: Walnut root Juglans hindsii x Juglans regia cDNA clone WRO-02-1_III_

TCTTTCCTACTC-CTCCCATT
.||.|||||||| ||||||||
GGAGAGGATGAGAGAGGGTAA

EST sequence (targeted fragment marked with yellow):
CAATATCCAAAGAAAAAACAAATGGGAGAGAGTAGGAGAGGATTAGGTGAATGTGTAGCTAACGGTCAGTCTATGTATGGGTTTTGATCTTGCGTTGCAGTTTTTGGGTTACTCCTACCCAATTATTTTGAGATGGTAAATACAATTAGCTATGCTATGAAGCTCCGTATCTCTATTCACTACTTAAAAATATATAATTTTATATTAAATTTAATATAAAATATAAAAATAAAAAAATAAAATTACATATTTTTAAATAATATATAAGAATGTCAGACTTATATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT