| mature miRNA: TGAAGCTGCCAGCATGATCT species: Juglans hindsii x Juglans regia database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|133868010|gb|EL899449.1|EL899449 CGF2003980_G03 WRN-02: Walnut root infected with Pratylenchus vulnus Juglans hindsii x Jugl TGAAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): CACTTTCATCGTCCTTACAGAAAGAAAAAAGCTTCATCTCTCTCTCTCTCTCTCTGATCTCTCTTTTATCCATCTTCTTCAATCTGTGGCTGCCTTACGGCCTGCTTCTCGTGCACCACTAGCAGTTGAAGCTGCCAGCATGATCTAAACTTTCTTCTCGATTAATCAAGGAAAGATCGGATCATATGGCAGCTTCACCTGTTGATGGAATCACGAAAAACCCAGAATTTTTTTCACAAATTGATCATGTCCATTCTTGCCATGATCTCCGCTGGATTATTAATACATATCTCATATATATGCCCATCTGGGTATTCTAGTGAAAGGCCCTAGAACAAGATTTGGTAATATTCTCTATTCAAATTTTACTCTTTTGGACAGATGCAAGATTTACCTTCTTCTATATCTGATTCTTGGAGCCATTCCATTTGTATATGTTGGTTTTGTTGTTGTTGTTATTCTTGTGTGTTTAGTATTTTGATCATTTTTGGGTTGTACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|133871662|gb|EL903045.1|EL903045 CGF2003586_F03 WRO-02: Walnut root Juglans hindsii x Juglans regia cDNA clone WRO-02-9_I_F0 TGAAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): TCATGCTCTATTTCGGATAGTTCCGAGTTGTCTAAAGCTTATTGGACTGATTAATGGAGGAGGCAGTACTGACGAAGGCGGAAGCCGAAATGCCAACAGCGGCTCAACCTCTGGCTTCTTTAATTGATGTTCCAAACGATGCAGCAGATGAGAAAGCTGTGGCTCTAGCACCAGAACCCAAAGCTATTGTGGAGAGTAAGCCCTGATTTTCTATCTCAGCACTATTTATTGTTTTCAGCGATCGTTTTCTTTTTTTGCCAAATATATTTGCAAAGACAGATGATGATGGTAGTTTCAGCAACAAACCAGTCATTGGAAATCCACTTTTCCTTTTGTTTTCAGAAGAAAACTAGATTATATCCCATAATGGTCGATTCAATGAAAGTCAAGGCTCAAATCCTACTTATGATCAGGAAAAAAAAATGAAAAATCTCCTGGAAATCTTGAGAGGGTCAGTCGGATGATATGAAAAAGGCATATAATTGAATAATGAGGCATCATGATCAGTTGAATGGAATGTGAATATGTTGTAAATCTATCTTTATTGGTTAATTTCTGTAACAGAGACTCCAGACGCTGTGGTGAAGGTAGCTTCAAAGGGTTCACTTGATAGAGGTGAGTATCGGAATTACTTCTCAATGCCATTTATTTTCATTGAGAAATGCTTAGTCCACAGTACTGATTGATGTACTTGATCAGATGCATTTCCCATTTCCTCTAGCTCCCGAAAAAGACATTATATGTACTGGATTAAAAGGGTCAATCATCCAAAAATTAAGATTTTT | |||||||||