miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGTGTTCTCAGGTCACCCCTT
species: Lactuca perennis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|83877097|gb|DW079177.1|DW079177 CLPX15133.b1_J15.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPX15133, mRNA se 

TGTGTTCTCAGGTCACCCCTT
||||||||||| ||||||| |
ACACAAGAGTC-AGTGGGGTA

EST sequence (targeted fragment marked with yellow):
GCCATTTGACAAAAACATGAACCAAAAATGGAGTGCCCAATGGGGTGACTGAGAACACAACAGAAGTTTGATGATCCGAGGTTAAATTCAGGATTGGGTTTCTGAATTTTAAACTATATGTTGAGCAGAGTTTTTGCAGTCTGTGTTTTTTTTTATTTTGTTCAAAGAAAATTATTTACAAGATTTGAACTTTTTGAGTTTTGACTAAGCGTGTTGAGTGAATAACTTGTCATTACTGAATAAAGGTGTTTTGGGGTTGTAAGGATGCGTGATTATTTGAGGCTTTTGATTGGTTTTTTA


gi|83900449|gb|DW102529.1|DW102529 CLPZ5133.b1_J11.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPZ5133, mRNA sequ 

TGTGTTCTCAGGTCACCCCTT
|||| ||||||.| |||||..
ACACTAGAGTCTATTGGGGGG

EST sequence (targeted fragment marked with yellow):
ACGCGTTGGGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGTAGTTGCAGTTCTTTAACAGTCAGTGAGGGTGTTAGTGGCACACAGTCCTCTTCGAACAGAGAGACAGAAGGTGCTCCCACCACTGTTACGTCGCAAACACTTTCTGAGCTCTTAAACCTGGACCCACACGTTTTCCACTGATTCATGCACTTGGTGACACAACCTATGGATGCATGTCAACTGCCTCCTCATAACAATCCTCATGCAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAGGGTTGATTGTCTACTGTTCATCTCTATTCCAGGGAATACTGAGGCTTCATTTCTTGAAAAAACCC