| mature miRNA: GAATCTTGATGATGCTGCA species: Lactuca saligna database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|83791481|gb|DW051698.1|DW051698 CLLX4452.b1_G10.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX4452, mRNA sequen GAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): CGGGCTAGCATCAGAGGTTACATTCACAGCTGCCGGAGTTTTCCATTATCCATCAAAATGTATACTTCAAGGAAGAAAATTCAGAAGGACAAGGATGTTGAGCCCACTGAATTCGAGGAGTCTGTTGCTCAAGCATTGTTTGATTTGGAAAACGCAAACCAAGACCTTAAGAGCGACTTGAAAGACCTCTACATCAACACTGCCACCCAAATTGATGTGTCTACAAATCGCAAGGCTGTAGTGATTCATGTTCCATACAGATTGAGGAAAGGCTTTCGCAAGATTCATCTCAAGCTTGTGAGGGAGCTTGAAAAGAAGTTCAGTGGAAAGGATGTGGTTCTGATTGCAACAAGAAGAATGGTGCCTCCACCTAAGAAGGGTTCAGCTGCTACAAGGCCACGTTCACGTACTTTGACAGCTGTCCATGATGCCATGCTGGAAGACATTGTTTATCCAGCTGAGATTGTTGTGAAGCGTATCAGATACAGAATTGATGGATCCAAAATCATCAAGATTTATTTGGATCCAAAGGCGAGAAATGACACAGAGTATAAGCTGGAGACATTTGCTGGTGTTTACAGGAAGCTTTGTGGGANAGATGTTGTGTTTGAGTATCCAATCACAGAGGCTTGAAAAGTATGAATTTGTGTCGTTTCATTTTTGTTGTCTTTTTTAATGTCTGAAGTTTCAACTTAAAAGAATCAGATTATGCTTATTTTCTTTGTAGGAAAATACTGTTTTGATTGAAAATTTTCTATTTAGTTTGTTTGGCTTAAGTTATTGGTTGTTGAAAA | |||||||||
gi|83792768|gb|DW052985.1|DW052985 CLLX5644.b1_G20.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX5644, mRNA sequen GAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): ACTCTCTCCATTTTTTCCTCTTTGGTTCATCGAGTTGTTCATAGATCAGTAGATGGCTGGTGTCCTCGAAACTCTTACTGTTCCCCGAACTTCCGGCTTTCCGTCGGCGTCTTTGTCTCCGATCGTTTCTTCTCCTCTTTCTCGGCTCTCTGGTCGCCGGAATATTATAAAACTGCCGGAATCAAGAGGTTTGAGAATCCAGTCGTTTGGTTCTTCCGGATCGGTGAGCTTGAGAGCTAAATCTGGTCGCCGTGGAGCACGTATCGTATGCGAGGCTCAAGAAGCCGTCCAAGTGCTTCCTGTCACTGATGCAACATGGCAATCACTAGTCCTTGAATCTGGTCTCCCTGTAATGGTTGAATTCTGGGCTCCATGGTGTGGGCCATGTCGTATGATTCACCCAGTGATAGATGAACTTGCAAAGGAATACAATGGGAAGCTCACTTGTTACAAGGTAAATACTGATGAGAGCCCTTCAATTGCAAGCCGATATGGGATAAGAAGCATTCCAACTGTCATTATATTCAAAGATGGAGAGAAGAAAGATGCTGTCATTGGTGCAGTTCCTAAATCAACCCTGTGTAGCTGCATAGAGAAGTTCTTGTAGAGGTATTGTTATGTATATACAGTTCTAGATTTGTTCTTATTTAGTTCTATAATCTGTTTCATGATGTCTACCTTTTGATGTCATGAAACAGATGCTTTGGCGTTTGAGCATCATCAATATTTTCTCCGTATAGTTGGATCTTTAT | |||||||||
gi|83791543|gb|DW051760.1|DW051760 CLLX4509.b1_I24.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX4509, mRNA sequen GAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GTGTATGGAGAGAGCAGTCACCAACTTTGAAGCCAGTACTTACCAAGGAAACAACAACAACAACACTCTTCCTTCAACTCATCATGGAAGCGATCATGATCTGAATTTAAGCTTGGGAATTTCAACCACTTCTGTTGGTGAAGGTTCAAGTAGAAATGAAAATCCCGAACAACCCCATTTGAATTACCCCCATGACACTCGAAGATTTCAGATGGAGAACCCTGTTTCAACAGCAGCAGTAGGGATGCCAGCTGTTAAAGGATTGCCCTTAACTTCTGGACACTCTCCATCTTGGAATGGTGTATACCCTACTTTCGTTCCCAATTACGAGGGAAGCGGGACAAATAGCAGGACGATAGGAGGGTGTTCACAAGGACCGCCAAACTGGGGGTGGCAAGTGCAGGGTCATAATCACATCCCGATCGCAACAGCAGCAGCAGCAGCATCATCAGGATTCTCAGCCACTTCCGGCGACCATCATCACTCAATGGCAGCGGCTGCTTTCAATAGTCATTGTTTTCCGGCAACAACCTCTTCCCAATACTATTACCAGATAAGGCCGCCACCACCACCACCGCCTTAACTTTGTTTATATTTGACCAATTAGTTGACTTGCTACATGTGGCCTATTATATGGCTAGTGAACCGTGGCTGTGTTTGGTAGGTGCACACCCCTTCGGGCCATGATATATGTGTTTTTGTGTGTATGAGATATTGAATCCAATGACTACTTCAATTGTATTGTGTTGGGTATTGGGTATTATTGGGTATCATCAA | |||||||||
gi|83812272|gb|DW072489.1|DW072489 CLLZ3920.b1_O19.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLZ3920, mRNA sequen GAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GACTCCTAGCATCAGAGGTTACATTCACAGCTGCCGGAGTTTTCCATTGTAGATCCATCAAAATGTATACTTCAAGGAAGAAAATTCAGAAGGACAAGGATGTTGAGCCCACTGAATTCGAGGAGTCTGTTGCTCAAGCATTGTTTGATTTGGAAAACGCAAACCAAGACCTTAAGAGCGACTTGAAAGACCTCTACATCAACACTGCCACCCAAATTGATGTGTCTACAAATCGCAAGGCTGTAGTGATTCATGTTCCATACAGATTGAGGAAAGGCTTTCGCAAGATTCATCCCAAGCTTGTGAGGGAGCTTGAAAAGAAGTTCAGTGGAAAGGATGTGGTTCTGATTGCAACAAGAAGAATGGTGCCTCCACCTGAGAAGGGTTCAGCTGCTACAAGGCCACGTTCACGTACTTTGACAGCTGTCCATGATGCCATGCTGGAAGACATTGTTTATCCAGCTGAGATTGTTGGGAAGCGTATCAGATACAGAATTGATGGATCCAAAATCATCAAGATTTATTTGGATCCAAAGGCGAGAAATGACACAGAGTATAAGCTGGAGACATTTGCTGGTGTTTACAGGAAGCTTTGTGGGAAAGATGTTGTGTTTGAGTATCCAATCACAGAGGCTTGAAAAGTATGAATTTGTGTCGTTTCATTTTTGTTGTCTTTTTTAATGTCTGAAGTTTCAACTTAAAAGAATCAGATTATGCTTATTTTCTTTGTAGGAAAATACTGTTTTGATTGAAA | |||||||||
gi|83797280|gb|DW057497.1|DW057497 CLLY10099.b1_F05.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY10099, mRNA sequ GAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GGGATAGTAGACCAAAACTTAAACTCGATCTTAATCGATTATCTCTCTATACAAATGAAGAGATCAATGTCCAAATCCGAAGATCCTACGAACAGCACCATTGATGTTAAAAACAGCAAGATGAAGAAGATTAAGTTATCAGAAGATCAGGCTCCGCTGCCGGAAGCGGTTACGGCGGTGGATGTCCTCTCTGACGAAAACTTGCTGTACGAGATCCTGAAGCACGTCGATGGTCGGACCTTAGGTGCGGCGGGTTGCGTGTGCAAGCAGTGGCATCGGACTTCTCAAGATGAGCGGTTATGGGAGCTGATATGTACAAGGCATTGGGCAAATATGGGCTGCGGCAACAACCAGCTCCGTTCGGTAGTCCTTGCGCTAGGTGGTTTCCGCCGCCTTCACTCTCATTACCTATGGCCATTATCCAAGCCATCAACCTCCACGATCACCTCATCGTCTTCTTCCACCATCGCCGCCGCAACCTCATCCAGCTCTGTGTGGCCGTGTCTACCACTGCCGCGTACAATTGGTGGTCTCTCAAAGCCTACATCCCCCAAAACACATTGGGGAAAAGACGAGGTTCAACTCTCGCTATCTCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAAGAATCGAACCAAATGAAACCATCAAAATTAGATCAAGAATTCAAGATCACATGGTTTTTTTGTTTTCAGTTTCATCAGGATTTGACTTTTCCTTTGTCTTAATTGATGTTTGTTCGTAGTTTCTAGTATGATGTAGTACGTTGTTCTGCCATATTCCTAACCAAAAACAACACAACTGTTAAATTGTGC | |||||||||
gi|83809118|gb|DW069335.1|DW069335 CLLY9139.b1_F06.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY9139, mRNA sequen GAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): AGGCCACCAAGAAAGGCTCAGCAGCCACCAGACCTCGTTCACGCACCCTGACAGCTGTCCATGATGCCATGCTGGAAGATGTGGTGCACCCTGCTGAGATTGTTGGGAAACGTGTTAGATATAGGCTCGATGGATCCAAAATCATCAAGATTTATTTGGATCCAAAAGCTCGTAATGACACTGAGTACAAGTTGGAGACATTCAGTGGAGTTTACAGGAAGCTTTCTGGGAAAGATGTTGTGTTTGAGTACCCAATTACAGAAGCTTGAAATGTGTTTGAAGGATTTTGAGTTGGTTGAATTATATTTTATGTTGAAAATTTTGACTTGAAAAGTATATCATCAGTCGTTCTTTGGTGTTAGTTAAATTGACGTTTGCTTCTTTTATTGGGGCATGATTGTAGTTGGATTAGGAATATGGGTATTAAAGCGATTGCTTCTAGAAATTATCTTG | |||||||||