| mature miRNA: TGTGTTCTCAGGTCACCCCTT species: Lactuca saligna database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|83799210|gb|DW059427.1|DW059427 CLLY12022.b1_L05.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY12022, mRNA sequ TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): ACTACTCCCACACTCTTACGACGCTTTGAGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTTAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGAGGGCACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACCGCTCTCATCTCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAAAACCATATAAAAATTAGATGTATCTTCATACTTTCTCACTCTCTATCTCCATAAGTTATGGTTGTGTCACTGCTGCGTTGTTGTTCAATAAAGTATTCCCTGTGCTATT | |||||||||
gi|83799311|gb|DW059528.1|DW059528 CLLY12114.b1_C06.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY12114, mRNA sequ TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): CGGGGATATCGACTCTCACACCACTCTTACGACGCTTTGAGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTTAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGAGGGCACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACCGCTCTCATCTCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAAAACCATATAAAAATTAGATGTATCTTCATACTTTCTCACTCTCTATCTCCATAAGTTATGGTTGTGTCACTGCTGCGTTGTTGTTCAATAAAGTATTCCCTGTGCTATTTCAATAA | |||||||||
gi|83810601|gb|DW070818.1|DW070818 CLLZ2194.b1_C22.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLZ2194, mRNA sequen TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GACTATCCACACACTCTTAAGACGCTTTGAGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTTAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGAGGGCACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAGGCTTGATTGTCTACTGCTCTCATCTCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAAAACCATATAAAAATTAGATGTATCTTCATACTTTCTCACTCTCTATCTCCATAAGTTATGGTTGTGTCACTGCTGCGTTGTTGTTCAATAAAGTATTCCCTGTGCTATTTCAATACTTGAATATCTTTTGAGCCAAGTTTTGAATTTAGACTTGTTTT | |||||||||
gi|83787442|gb|DW047659.1|DW047659 CLLX14303.b1_M23.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX14303, mRNA sequ TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): CACTCTTACGACGCTTTGAGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTTAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGAGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTACGCGAAGAGGGCACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGCTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCTATTCCAGGGAATACTGACGCTTTCTTTCTTGAAAAAAAAGAAACCGTATAAAAATTACATGTATCTTCATACTTTCTCACTCTCTATCTCCATAAGTTATGGTTGTGTCACTGCTGCGTTGTTGTTCAATAAAGTATTCCCTGTGCTATTTCAATACGTGAATATCTTTTGTCGAGAAGGTGGTAATTACCGGAGGA | |||||||||
gi|83784339|gb|DW044556.1|DW044556 CLLX11382.b2_K14.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX11382, mRNA sequ TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GCGGGACTCGACACTCACACACACTCTTACAGACGCTTTGAGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAAGAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTTAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACGACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGAGGGCACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAAAACCATATAAAAATTAGATGTATCTTCATACTTTCTCACTCTCTATCTCCATAAGTTATGGTTGTGTCACTGCTGCGTTGTTGTTCAATAAAGTATTCCCTGTGCTATTG | |||||||||
gi|83788160|gb|DW048377.1|DW048377 CLLX14975.b1_N24.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX14975, mRNA sequ TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): ACTACTCCCCACTCTTACGACGCTTTGAGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTTAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGAGGGCACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGCTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAAAACCATATAAAAATTAGATGTATCTTCATACTTTCTCACTCTCTATCTCCATAAGTTATGGTTGTGTCACTGCTGCGTTGTTGTTCAATAAAGTATTCCCTGTGCTATTTCCATACTTGAATATCTTTTGAGAAAAAAAAAAAAAA | |||||||||
gi|83785943|gb|DW046160.1|DW046160 CLLX12894.b1_K08.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX12894, mRNA sequ TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GCGGGATCTCGACTCTCCACACACTCTTACAGACGCTTTGAGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTTAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGAGGGCACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAAAACCATATAAAAATTAGATGTATCTTCATACTTTCTCACTCTCTATCTCCATAAGTTATGGTTGTGTCACTGCTGCGTTGTTGTTCAATAAAGTATTCCCTGTGCTATTTCAATACTTGAATATCTNTTGAGCCAAGTTTTGAATTTAGACTTGTTTTTATACAATTTCCCTTTTCTGTTTA | |||||||||
gi|83808292|gb|DW068509.1|DW068509 CLLY8286.b1_K08.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY8286, mRNA sequen TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GCGGGGATATCGACTCTCCACACACTCTTACGACGCTTTGAGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTTAAACCTGGACCTCATGGTTTCCACGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGAGGGCACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTTGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAAAACCATATAAAAATTAGATGTATCTTCATACTTTCTCACTCTCTATCTCCATAAGTTATGGTTGTGTCACTGCTGCGTTGTTGTTCAATAAAGTATTCCCTGTGCTATTTCAATAC | |||||||||
gi|83813919|gb|DW074136.1|DW074136 CLLZ632.b1_O14.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLZ632, mRNA sequence TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): CGGGGGAATCGATATAATAATAAACCGTGCCCTATCTCGAGGTATCATCGACTACTCACACACACTCTTACAGACGCTTTGAGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTTAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGAGGGCACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAAAACCATATAAAAATTAGATGTATCTTCATACTTTCTCACTCTCTATCTCCATAAGTTATGGTTGTGTCACTGCTGCGTTGTTGTTCAATAGAGTATTCCCTGTGCTATTT | |||||||||
gi|83810672|gb|DW070889.1|DW070889 CLLZ2266.b1_D16.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLZ2266, mRNA sequen TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GCGGGGTATCGACTACTCCCCACTCTTAAGACGCTTTGAGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTTAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGAGGGCACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAGGCTTGATTGTCTACTGCTCTCATCTCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAAAACCATATAAAAATTAGATGTATCTTCATACTTTCTCACTCTCTATCTCCATAAGTTATGGTTGTGTCACTGCTGCGTTGTTGTTCAATAAAGTATTCCCTGTGCTATTTCAATACTTGAATATCTTTTGAGCCAAGTTTTGAATTTAGACTTGTTTTTA | |||||||||