| mature miRNA: TTGGATTGAAGGGAGCTCT species: Lactuca saligna database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|83802405|gb|DW062622.1|DW062622 CLLY2269.b1_J16.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY2269, mRNA sequen TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GTCGCCTTTCTAGCTTTTGCGAACCCTCGCCTGCGCTAAAACTCGATCGATTGCGGCTTTCAAATTGATCTGCTGATGGGGCACTCTAACATATGGAATTCTCACCCTAAGACCTACGGCCCTGGTTCACGCACCTGCCGTGTGTGTGGGAACTCCCATGGTATAATCAGGAAATATGGTCTTATGTGCTGCAGACAGTGTTTCCATAGCAATGCTAAGGAAATTGGTTTCATTAAGTATCGTTAAGGGGTTTTGAAGGTTTGAGTAAAGAAGAGATGATTATTTACTAAAGTGAAAGGGTTTTTATGTGCTTTTTTATATTTAGTATATGTTTGTGACTTCTTGATTGCTCTCTTCAATTTAAGGCATTTTTTTTTGATATTGAATGTATTTGGTGGACATGAAAACCATTTTTTTTTTTTGAAGTAATGATGGGAAACTTAGTTCTAAA | |||||||||
gi|83793360|gb|DW053577.1|DW053577 CLLX6202.b1_C15.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX6202, mRNA sequen TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GCGGGAATGTTTGTTGTGATGTTATTTCTTGTCATCGCCGTGTCCAGGCCGTCCATTCTACAATCTTGACTTCAGAAGTCAATGGCCGTGCTCATGCCGTCGATCGCCTGAGTCTCTCATATATTCCAACGTCAAGTCGTCAACAACCATTCACGTTGCCTTCGATAACAAGAAATGGGTTCTCTCCGGGTGTCTGTATCTTCACTCGTCGTCATCGCCGCCGTCTTTCTTCTCTTCGTTCTCACCTCCGCCGAAATCCGGTTCACCGAGATTCGATCCGATTCAAACATCAACATTCCGATAGACGAATTCGGATTCACTCACTTCGGCCGTCTCCACCTCAACTTGTCTCAAATTTCATTCACTCCTCCAGAACCTGATCTTTCCAGAATTGGATTCTTCTTGTGTACTCGTGATTCATGGATCCATGTTGTCGAACAACTCCAATCGGAGAAAATCCGTTGCCCTCTCGATTCCCCCGCCGTCAAACCCGTCTTTACCTTCAACCACCTCAAACCCACCACCACAACGCCTTCGTACGATGCCGTTTTCAACGTCACCGATACCAATCAATTCACACTCGTTTTTGCCAATTGCGCCGGCGGCATCAAAGTTTCCGTGAACGTCCTCTCCGTCATGTACAATTTAAACCCCCAAAACAACGCGCCGCGATAACTTATCCGCCGGTAAATCAAATCTCCCTTCAATCTATTTCTTGTTTTTCTTGATTTATGCGTCTCTNTCCGGTATATGGATCTACACGCTGCACCACAGGAAGTCATCGACTTATCGAATCCATTACTTTATGTAAGCCGTGTTGCTTTTAAAAGCCCTAATCTCTTATG | |||||||||
gi|83784740|gb|DW044957.1|DW044957 CLLX11772.b1_G16.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX11772, mRNA sequ TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GTAGACATTGAGATCGTTCTTTCGATGCCTCCAGAGTCGCATCTGGATCTTCCATGAAGGGACTGACTGCAATGATGCCAACATTTGGTGCTGCTAATGCATCCGGTGGACCAAGCATGTTGGAAAGAGTTCCCCCAATGCCCTCCATGGTCATGATGAGTGGCGAGAATCGGAATCTGGTAGAATTGGAAAAATCTAGAAATTTGAAAGTGACAGAAATCTCTGAACCATCACAGTGTCGATCCTCAAGGCTTCCAGATGATACTTCTTCTGCAATGCGGGTTACAAGATTGATTTACACTAATTCAGGAGTTGCAGTCTTAGCTCTAGCAGCAAATGCTGTCCATAAATTATGGAAATGGCAGAGAAATGACCGTAATTCAACTGGGAAGGCAACTGCTAGTGTTCAACCTCAATTATGGCAACCAGTGAGTGGTATATTGATGACAAACGATATCAGTGAAACAAACCCTGAAGATGCCACTGCATGCTTTGCATTATCAAAGAACGACTCCTATGTCATGTCTGCTTCTGGTGGAAAGATTTCTTTGTTCAATATGATGACCTTCAAGACTATGACTACATTCATGCCCCCTCCACCTGCAGCAACCTTTCTGGCATTCCATCCACAAGATAACAATATTATTGCCATAGGCATGGAGGACTCTTCAATCCAAATATACAATGTCCGAATTGATGAGGTGAAAACCAAACTTAAAGGCCATCATAAACGAATAACAGGCCTAGCCTTCTCTAATGTCCTTNAATGTGTGATATCCTCTGGTGCTGATTCTCAGTTGTGTGTGTGGAACACGGATGGATGGGAGAAGCAAACAGGCAAACAATTACAAATTCCAGGAGGGCGGGGTCCCCGTCGCCCATGCTGATACCCGTGTC | |||||||||
gi|83796534|gb|DW056751.1|DW056751 CLLX9313.b1_B01.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX9313, mRNA sequen TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CTCGATCGATTGCGGCTTTCAAATTGATCTGCTGATGGGGCACTCTAACATATGGAATTCTCACCCTAAGACCTACGGCCCTGGTTCACGCACCTGCCGTGTGTGTGGGAACTCCCATGGTATAATCAGGAAATATGGTCTTATGTGCTGCAGACAGTGTTTCCATAGCAATGCTAAGGAAATTGGTTTCATTAAGTATCGTTAAGGGGTTTTGAAGGTTTGAGTAAAGAAGAGATGATTATTTACTAAAGTGAAAGGGTTTTTATGTGCTTTTTTATATTTAGTATATGTTTGTGACTTCTTGATTGCTCTCTTCAATTTAAGGCATTTTTTTTTGA | |||||||||
gi|83797857|gb|DW058074.1|DW058074 CLLY10692.b1_H10.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY10692, mRNA sequ TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CTGAACCCTTCGCATCTCCATTGTTTTTCCCGTCAAATTCTCGATCTCCCCTCCATCAAATCTCTCTTCAATCCAAGTCAGAAAATGGAGTTCGAATCCAACAACAACATTGTTGAAGAAAGCAACAACAATCACGGATGGCAGAAGGTTACTTACCCTAAGAAGCAGAGGAAGAATCCGGCGAAGCAGCAACAACAGCAGTCGACGAAGGTGTTTTCTAACGGATCTTCCATCCCCGCCGTTGATAATGTATTCACGTCAATTGAGAAGAAATCGGAGGAGCGTAGGAAGGTTATTGAAGCTGAGAGGTTAGCGAATTTGGCGATGTATGATCCCGCTCCTCCGACTAGATCGTCGAAGAAGAATAACTACTCTGATTATGACGATAGCGATGAAGAGGCTGTTGAAAATGGTGCGGCTGGGAATGGTGTTACCGAGGAGAAGAAGACGAAGCCAAAGAAGGTGAAGAAACCTAAGGTTACAGTTCCAGAAGCGGCGGCGAAGATCGATGCCGCCGATTTGGCTAGTTTTTTGTCCGATGTGACGGCTTCATTCGAGACGCAACAGGATATACAGTTGATGAGGTTTGCTGATTACTTTGGAAGAGCATTTGCTAGCGTTAGTGCTTCTCAGTTTCCATGGGTAAAGTTATTGAGAGAATCTGCTGTTGCAAAGGTTGCAGATAATCCAGTGTCACATATCCCTGAATCTGTTTACAAGACATCAGTTGACTGGATCAAT | |||||||||
gi|83804449|gb|DW064666.1|DW064666 CLLY4313.b1_A23.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY4313, mRNA sequen TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGGGGGATTAAATAACTCTCTTCAGTCCGAAAACAGCACTCGCCTAAAATTGAAAATTCACAAAGAAGGTCAGAAATTCATCTTCGTCTATGGAGCTAACACTAGATCAGTTGAAGCAGTACGACGGCACAGATCCATCAAACCCCATATACATCGGCGTGAAGGGTCGTATCTTTGATGTAAGCACCGCAAAGTCCTTCTATGGTCCTGGCGGCTCCTACGCAATGTTTGCCGGTAAAGATGCGAGCAGGGCCCTAGCCAAGATGAGCAAGAACGATGAGGATGTTATTGGATCTCTCCATGGGCTCACCGAAAAGGAGTTGGGAATTCTTGATGATTGGGAAAAGAAATTCGAAGCTAAGTACCCAATTGTTGGTTCTCTCGCTGCTTAATTAGATGATCGATTTTCTATACAGTTGACTGTTTGGCTTATTAAATTGCAACACTGTTGGTTTTAGTTGTGTATCATGATTTCAAAATCCGAATTTCATATACAGTGACTGTGTGGAAATGAACCCTAAGTTATATGTGTACGTGTGTCACTTGTAATGGGGTTGAATCGTTTGGCTTGAATAAGAGTTCTGTCTCACANAA | |||||||||
gi|83800873|gb|DW061090.1|DW061090 CLLY13565.b1_J07.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY13565, mRNA sequ TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): ATCTTGACTTCGAAGTCATGGTCGTGCTCATGCCGTCGACCGCCTGAGTCTCTCATATATTCCAACGTCAAGTCGTCAACAACCATTCACGTTGCCTTCGATAACAAGAAATGGGTTCTCTCCGGGTGTCTGTATCTTCACTCGTCGTCATCGCCGCCGTCTTTCTTCTCTTCGTTCTCACCTCCGCCGAAATCCGGTTCACCGAGATTCGATCCGATTCAAACATCAACATTCCGATAGACGAATTCGGATTCACTCACTTCGGCCGTCTCCACCTCAACTTGTCTCAAATTTCATTCACTCCTCCAGAACCTGATCTTTCCAGAATTGGATTCTTCTTGTGTACTCGTGATTCATGGATCCATGTTGTCGAACAACTCCAATCGGAGAAAATCCGTTGCCCTCTCGATTCCCCCGCCGTCAAACCCGTCTTTACCTTCAACCACCTCAAACCCACCACCACAACGCCTTCGTACGATGCCGTTTTCAACGTCACCGATACCAATCAATTCACACTCGTTTTTGCCAATTGCGCCGGCGGCATCAAAGTTTCCGTGAACGTCCTCTCCGTCATGTACAATTTAAACCCCCAACACAAGCGCCGCGATAACTTATCCGCCGGTAAATCAAATCTCCCTTCAATCTATTTCTTGTTTTTCTTGATTTATGCGTCTCTTTCCGGTATATGGATCTACACGCTGCACCACAGGAAGTCATCGGCTTATCGAATCCATTACTTTATGTTAGCCGTGTTGCTTTTAAAAGCCCTAAATCTCTTATGCGAAACCGAGGATAAATCCTACATTAAAAGATCAGGCACACCTCAAGGTTGGGATGTTCTGTTCTACATCTTTAGTTTCTTAAAGGGCATCACACTCTTCACTCTG | |||||||||
gi|83808089|gb|DW068306.1|DW068306 CLLY8071.b1_M01.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY8071, mRNA sequen TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGTCGTGGTTCTCGACAACGGTGGCGGTCTAATTAAGGCAGGTATCGGCGGTGAACGTGATCCAACAACCGTAGTCCCAAACTGCACTGCTCGACCGCTTTCCTCCAAGAAATTCCTGCTAGCGGACCAACTTCTGTCTCCAACGGAAGACCTAACCTCCGCCGTTCTCCGTCGTCCCTTCGACCGCGGTTACCTCATCAACCAAGACCTCCAATCGACCATCTGGTCACACATCTTCTCTTCTCTCCTCCACGTCACACCTTCCTCCTCGTCACTCCTCCTCACCGAACCCTTATTCAACCTCCCTTCAATCCAACGCGCCACCGACGAAATCGTCTTCGAGGAGTTCAATTTTCAATCACTGTTCGTCTCCGATTCACCGTCTCTAGTTCACTTATACGAGGCCAGGAGACGCCCTTACGACGTCCTGTCGAAGGCGCAATGTAGCCTAGTGGTGGACGTAGGGTTCAGTTTCACTCACGTAGCCCCGGTTTTCCAGAACTTCACTGTGAATTACGGCGTGAAGAGGATGGATTTGGGCGGGAAGGCATTGACGAATTACTTAAAAGAACTAGTGAGCTATCGGTCTATTAATGTCATGGATGAAACCTTCTTAATGGATGATGTCAAAGAAAAACTATGCTTTGTTTCAACAGATGTCGCTCGTGATTTGCAGATAGCTAGGAGACGTGGAAATGACAATTACTTTAGGTGTACATATGTGCTTCCTGATGGAATCACACACATAACGGGATTCGTGAAAGACCCTGTTGAAGCACAAAGACATCTTACATTATCTGAAAAT | |||||||||
gi|83809012|gb|DW069229.1|DW069229 CLLY9032.b1_O02.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY9032, mRNA sequen TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGCGGGGATCTTCACTCTGATACTATCTACTTCATCTCTCCAGTGGGAATTCACTACTCTTGCAGACTTGTTCATAGATCGGGTAGATATGGGGGTAGTGAAGGCGGCGATTGGTGATGGGGTGTTGACTTTCATGTGGGTTTTCTGTGCTTCCACCTTGGTGCTACTACTTCCGTCATCGCCGCTGCCATCGGGATCCAAGGGATGGCGTCTCTTTTGATCACAATCTCCCTCGTATTCATCCTCTTGCTCATCTTCGGTGTTATTGGCGATGCGTTAGGTGGAGCTAGCTTCAATCCCACCGGTACTGCCGCCTTCTATGCTGCCGGTCTCGGCCGCGATTCCCTCATCTCCGCCGCCGTCCGATTTCCTGCTCAGGCTTTAGGTGCTGTTGGTGGTGCTATGGCGATTGTTGAAGTAATGCCATTGGAGCACAAACACAAGCTCGGTGGACCTTCTCTGAAAGTTGACATGCACACGGGTGCCATTGCTGAAGGCGTGTTGACTTTCTTTACAAGTATTTTGGTCCTCTGTATCATTCTCAAAGGTCCCAAAAGTCCACTCATAAAGAATTTTCTGCTTTCCACATCAATCGTCACTATGGTCGTTGCTGGTGCCAAGTACACTGGTCCTTCAATGAATCCCGCCAATGCGTTCGGATGGGCATATGTGAATAAGCGACATGATACATGGGAACATTTTTATGTTTATTGGATTTGTCCATTTGTAGGCGCGATATTTGCTGGTTGGGTTTTCCGATTGTTCTTTCCACATCAATCGAAGACGAAGGTGAAAGCAAAATCGAAAAAGGCTAAAACCGAGCTCAAGATTTGTTCCTATATATTTGCTTATTGTAACTAATTGATGTTC | |||||||||
gi|83807050|gb|DW067267.1|DW067267 CLLY6726.b1_K02.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY6726, mRNA sequen TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): ACGCTTCGATCCCACTTCCCCCACCATTGCCACCTAATCACCACCCTTTGATTTCCAAAACCGATGGCATAAACACCATCTCCGCCTCCTCCTTTTCCAAACCTACAAACACGATCAGTGGTGGCAGCAGTAGTAATTGGTGTAGATTATGGAGTGATGGTGATTACAATTTCGAAGCGGAGAAACAAAATCAAAATCAAAATCAAAATCATGGTATGGACCACCCTAGATACACTGCAGCCTTTCCAGCAAATCTTGGTGGTTTGCCTTACGAATCCAACCCTCTCATTTGGCCACCTCCTCCTAATCTAATGCTTCAAAAATCATCACACTTTCAACAACCTTGTTCTTCATCAATGGTGAATGTTTCAACAGGAACTTCATCATCGTCATCATCATCTGTATTAAATTTTCAGATGGAGCCCCCTTCAAACCAAAGCTATAATAATGGCAACAACAACTACCATCCATTGTGGCCAGAGGAAGACAAGATGGTTGGCATGAAAAGGCCATACCCGTTTTCATTGGAAAACGTGCCAATTCCATCTTTTCATTGCAAATTTCCTTCGGCTTTTGTGTCTCCCATTTCAAGATCAGATGAATCAGCTTCTTGTAGCAATGGAGGCACTATCACCATGGAACCTGCACATCCAGTTTTCAGAGAGAATCCTTCAAGCTCAGGTCTCATATCCGATACAATAACAAAGAAATTCATCGATGAACACCAAGGTTTGACTTTGACCAGAGATTTTCTCAAGTTAGCCCCTCCTCAAGCATCTTGTATA | |||||||||
gi|83790397|gb|DW050614.1|DW050614 CLLX3398.b1_L10.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX3398, mRNA sequen TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGGGGTTGATGAATGATTAAAGGAGAGAGCATCATAGAACCACACGGCTCCGTACGTATAAGCAAAAACCGCCAGAAATTCCTTGAATCCAATTGGGTATTCGATTTGAAGCTTAATTTCTACCATTCAGAGTGCAATTCGGAGATTCACTTAAAAGAGTAAAATATGGCAGTGGCATTTTCGCAATTTTCATGGTGGTCATGGAGTGGAAAACATCAAGATACAAAAATCCGCAACGGGTCCTCCAAGAATTCCTCAACAACAAAAACCGATATAAATATATTAGAATTCGACAATCTAAAGTTCCCATTAGTAAATGTGACACCATCAGCCTCTAAAAGAGTAAAAAGAAAGTGGCAAAATCGAAGAGAACGCAAGGTTGATAAAGAATATGATGTTGTATTGGTTCCATCCGACGGTGGTTGTTTATCCGGATCAGAATCCGACGACTCTGATTGGTCGATTGGATGGTTGGAACCTCATGGTGCTGGTTTTTATAGTGATGATGATGATGATGATGATGATTCAGATGATAGTTTTGCTGTTCTTGTTCCTTGTTATGGTCGTGGACGTGGGGATGTTGTTAACACTAAGAATGTTTCAAATGATAGATTCTTGGACCACACTATTGGACAAGTTCCCGATATTTATTCTACTCGTAAGTCCTCTTATTTTTCTATGAAATATTCATCACAATTTGTAAAACTTAGGTTTGTAATTGTCTGATAGATGGAAATCAGGTATACAGTGGTCTGCTAGGTGGCTGACATAAAAACCGTCTGCCTATAATGAGTTTAGTCCACATTGGAATTGGGACTCGTGACTAACATGATGCAT | |||||||||
gi|83813536|gb|DW073753.1|DW073753 CLLZ5451.b1_E19.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLZ5451, mRNA sequen TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GCGGGGAGTATTAAAAAGGATTTGGTTTTTGGGAAACAGTGTGTGTGTGTGGTGAGAAGATACAGAGATTGAGGGATTTGGCAATGGAGACTGCCATTAGCCGTCGACTCGCTCCTTCCCCTAACCATGGCCTTCTTCAATCCAAACCAGGGGACAAATACCTGCTTCATAAACAAAGCACAAAATGGATCACAGTTATGACAATGGCGCCTCCAAGGCTGGAAAAGGGTGCTGGGGTGTTAGATAAGCCAGTAATAGAGAAAACAACTCCTGGAAGAGAGTCTGAGTTTGACTTGAGGAAATCAAGGAAAATGGCACCACCATATAGAGTGATGCTACACAATGACAACTACAACAAGAGGGAATATGTTGTGCAAGTGTTGATGAAGGTTATACCTGGAATGACAGTTGACAATGCAGTTAATATCATGCAAGAGGCACACATCAATGGGTTGTCTGTGGTGATTGTGTGTGGGCAAGCAGATGCAGAAGAGCATTGCACACAGCTGAGAGGGAATGGGCTTTTGAGTTCAATTGAACCCGATAGTGGAGGGTGTTAGAAAGGTGAGTTAGTAAGTAAGTGAGTACATGATGGGTCTAGTGACACTATATATAGTCAGTCATCTGTGATTTGTAAGTACTAGGATTATGGCTATATCAATGTCAATAATGAAAAAGAATGATATTATATATATATATATTGAATATGATAAGAATTAAGAAATATGATTTCGGATTGCTTTTACTA | |||||||||
gi|83813596|gb|DW073813.1|DW073813 CLLZ551.b1_N17.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLZ551, mRNA sequence TTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGGGGGACTAAAATAACTCTCTTCAGTCCGAAAAAGCACTCGCCTAAAATTGAAAATTCACAAAGAAGGTCAGAAATTCATCTTCGTCTATGGAGCTAACACTAGATCAGTTGAAGCAGTACGACGGCACAGATCCATCAAACCCCATATACATCGGCGTGAAGGGTCGTATCTTTGATGTAAGCACCGCAAAGTCCTTCTATGGTCCTGGCGGCTCCTACGCAATGTTTGCCGGTAAAGATGCGAGCAGGGCCCTAGCCAAGATGAGCAAGAACGATGAGGATGTTATTGGATCTCTCCATGGGCTCACCGAAAAGGAGTTGGGAATTCTTGATGATTGGGAAAAGAAATTCGAAGCTAAGTACCCAATTGTTGGTTCTCTCGCTGCTTAATTAGATGATCGATTTTCTATACAGTTGACTGTTTGGCTTATTAAATTGCAACACTGTTGGTTTTAGTTGTGTATCATGATTTCAAAATCCGAATTTCATATACAGTGACTGTGTGGAAATGAACCCTAAGTTATATGTGTACGTGTGTCACTTGTAATGGGGTTGAATCGTTTGGCTTGAATAAGAGTTCTGTCTCANNTTGNNNAANA | |||||||||