miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTGGATTGAAGGGAGCTCTA
species: Lactuca saligna
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|83784740|gb|DW044957.1|DW044957 CLLX11772.b1_G16.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX11772, mRNA sequ 

TTGGATTGAAGGGAGCTCTA
|||||||||||.|  |||.|
AACCTAACTTCTCAGGAGGT

EST sequence (targeted fragment marked with yellow):
GTAGACATTGAGATCGTTCTTTCGATGCCTCCAGAGTCGCATCTGGATCTTCCATGAAGGGACTGACTGCAATGATGCCAACATTTGGTGCTGCTAATGCATCCGGTGGACCAAGCATGTTGGAAAGAGTTCCCCCAATGCCCTCCATGGTCATGATGAGTGGCGAGAATCGGAATCTGGTAGAATTGGAAAAATCTAGAAATTTGAAAGTGACAGAAATCTCTGAACCATCACAGTGTCGATCCTCAAGGCTTCCAGATGATACTTCTTCTGCAATGCGGGTTACAAGATTGATTTACACTAATTCAGGAGTTGCAGTCTTAGCTCTAGCAGCAAATGCTGTCCATAAATTATGGAAATGGCAGAGAAATGACCGTAATTCAACTGGGAAGGCAACTGCTAGTGTTCAACCTCAATTATGGCAACCAGTGAGTGGTATATTGATGACAAACGATATCAGTGAAACAAACCCTGAAGATGCCACTGCATGCTTTGCATTATCAAAGAACGACTCCTATGTCATGTCTGCTTCTGGTGGAAAGATTTCTTTGTTCAATATGATGACCTTCAAGACTATGACTACATTCATGCCCCCTCCACCTGCAGCAACCTTTCTGGCATTCCATCCACAAGATAACAATATTATTGCCATAGGCATGGAGGACTCTTCAATCCAAATATACAATGTCCGAATTGATGAGGTGAAAACCAAACTTAAAGGCCATCATAAACGAATAACAGGCCTAGCCTTCTCTAATGTCCTTNAATGTGTGATATCCTCTGGTGCTGATTCTCAGTTGTGTGTGTGGAACACGGATGGATGGGAGAAGCAAACAGGCAAACAATTACAAATTCCAGGAGGGCGGGGTCCCCGTCGCCCATGCTGATACCCGTGTC


gi|83808089|gb|DW068306.1|DW068306 CLLY8071.b1_M01.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY8071, mRNA sequen 

TTGGATTGAAGGGAGCTCTA
||||||||||||||| |  |
AACCTAACTTCCCTCCAACT

EST sequence (targeted fragment marked with yellow):
CGTCGTGGTTCTCGACAACGGTGGCGGTCTAATTAAGGCAGGTATCGGCGGTGAACGTGATCCAACAACCGTAGTCCCAAACTGCACTGCTCGACCGCTTTCCTCCAAGAAATTCCTGCTAGCGGACCAACTTCTGTCTCCAACGGAAGACCTAACCTCCGCCGTTCTCCGTCGTCCCTTCGACCGCGGTTACCTCATCAACCAAGACCTCCAATCGACCATCTGGTCACACATCTTCTCTTCTCTCCTCCACGTCACACCTTCCTCCTCGTCACTCCTCCTCACCGAACCCTTATTCAACCTCCCTTCAATCCAACGCGCCACCGACGAAATCGTCTTCGAGGAGTTCAATTTTCAATCACTGTTCGTCTCCGATTCACCGTCTCTAGTTCACTTATACGAGGCCAGGAGACGCCCTTACGACGTCCTGTCGAAGGCGCAATGTAGCCTAGTGGTGGACGTAGGGTTCAGTTTCACTCACGTAGCCCCGGTTTTCCAGAACTTCACTGTGAATTACGGCGTGAAGAGGATGGATTTGGGCGGGAAGGCATTGACGAATTACTTAAAAGAACTAGTGAGCTATCGGTCTATTAATGTCATGGATGAAACCTTCTTAATGGATGATGTCAAAGAAAAACTATGCTTTGTTTCAACAGATGTCGCTCGTGATTTGCAGATAGCTAGGAGACGTGGAAATGACAATTACTTTAGGTGTACATATGTGCTTCCTGATGGAATCACACACATAACGGGATTCGTGAAAGACCCTGTTGAAGCACAAAGACATCTTACATTATCTGAAAAT


gi|83797857|gb|DW058074.1|DW058074 CLLY10692.b1_H10.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY10692, mRNA sequ 

TTGGATTGAAGGGAGCTCTA
|||||||||||.||| | |
AACCTAACTTCTCTCTAAAC

EST sequence (targeted fragment marked with yellow):
CTGAACCCTTCGCATCTCCATTGTTTTTCCCGTCAAATTCTCGATCTCCCCTCCATCAAATCTCTCTTCAATCCAAGTCAGAAAATGGAGTTCGAATCCAACAACAACATTGTTGAAGAAAGCAACAACAATCACGGATGGCAGAAGGTTACTTACCCTAAGAAGCAGAGGAAGAATCCGGCGAAGCAGCAACAACAGCAGTCGACGAAGGTGTTTTCTAACGGATCTTCCATCCCCGCCGTTGATAATGTATTCACGTCAATTGAGAAGAAATCGGAGGAGCGTAGGAAGGTTATTGAAGCTGAGAGGTTAGCGAATTTGGCGATGTATGATCCCGCTCCTCCGACTAGATCGTCGAAGAAGAATAACTACTCTGATTATGACGATAGCGATGAAGAGGCTGTTGAAAATGGTGCGGCTGGGAATGGTGTTACCGAGGAGAAGAAGACGAAGCCAAAGAAGGTGAAGAAACCTAAGGTTACAGTTCCAGAAGCGGCGGCGAAGATCGATGCCGCCGATTTGGCTAGTTTTTTGTCCGATGTGACGGCTTCATTCGAGACGCAACAGGATATACAGTTGATGAGGTTTGCTGATTACTTTGGAAGAGCATTTGCTAGCGTTAGTGCTTCTCAGTTTCCATGGGTAAAGTTATTGAGAGAATCTGCTGTTGCAAAGGTTGCAGATAATCCAGTGTCACATATCCCTGAATCTGTTTACAAGACATCAGTTGACTGGATCAAT


gi|83809012|gb|DW069229.1|DW069229 CLLY9032.b1_O02.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY9032, mRNA sequen 

TTGGATTGAAGGGAGCTCTA
| |||||||||  |||||.|
ACCCTAACTTCGATCGAGGT

EST sequence (targeted fragment marked with yellow):
GGCGGGGATCTTCACTCTGATACTATCTACTTCATCTCTCCAGTGGGAATTCACTACTCTTGCAGACTTGTTCATAGATCGGGTAGATATGGGGGTAGTGAAGGCGGCGATTGGTGATGGGGTGTTGACTTTCATGTGGGTTTTCTGTGCTTCCACCTTGGTGCTACTACTTCCGTCATCGCCGCTGCCATCGGGATCCAAGGGATGGCGTCTCTTTTGATCACAATCTCCCTCGTATTCATCCTCTTGCTCATCTTCGGTGTTATTGGCGATGCGTTAGGTGGAGCTAGCTTCAATCCCACCGGTACTGCCGCCTTCTATGCTGCCGGTCTCGGCCGCGATTCCCTCATCTCCGCCGCCGTCCGATTTCCTGCTCAGGCTTTAGGTGCTGTTGGTGGTGCTATGGCGATTGTTGAAGTAATGCCATTGGAGCACAAACACAAGCTCGGTGGACCTTCTCTGAAAGTTGACATGCACACGGGTGCCATTGCTGAAGGCGTGTTGACTTTCTTTACAAGTATTTTGGTCCTCTGTATCATTCTCAAAGGTCCCAAAAGTCCACTCATAAAGAATTTTCTGCTTTCCACATCAATCGTCACTATGGTCGTTGCTGGTGCCAAGTACACTGGTCCTTCAATGAATCCCGCCAATGCGTTCGGATGGGCATATGTGAATAAGCGACATGATACATGGGAACATTTTTATGTTTATTGGATTTGTCCATTTGTAGGCGCGATATTTGCTGGTTGGGTTTTCCGATTGTTCTTTCCACATCAATCGAAGACGAAGGTGAAAGCAAAATCGAAAAAGGCTAAAACCGAGCTCAAGATTTGTTCCTATATATTTGCTTATTGTAACTAATTGATGTTC


gi|83807050|gb|DW067267.1|DW067267 CLLY6726.b1_K02.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY6726, mRNA sequen 

TTGGATTGAAGGGAGCTCTA
|||| |||||||| ||||.|
AACCAAACTTCCCCCGAGGT

EST sequence (targeted fragment marked with yellow):
ACGCTTCGATCCCACTTCCCCCACCATTGCCACCTAATCACCACCCTTTGATTTCCAAAACCGATGGCATAAACACCATCTCCGCCTCCTCCTTTTCCAAACCTACAAACACGATCAGTGGTGGCAGCAGTAGTAATTGGTGTAGATTATGGAGTGATGGTGATTACAATTTCGAAGCGGAGAAACAAAATCAAAATCAAAATCAAAATCATGGTATGGACCACCCTAGATACACTGCAGCCTTTCCAGCAAATCTTGGTGGTTTGCCTTACGAATCCAACCCTCTCATTTGGCCACCTCCTCCTAATCTAATGCTTCAAAAATCATCACACTTTCAACAACCTTGTTCTTCATCAATGGTGAATGTTTCAACAGGAACTTCATCATCGTCATCATCATCTGTATTAAATTTTCAGATGGAGCCCCCTTCAAACCAAAGCTATAATAATGGCAACAACAACTACCATCCATTGTGGCCAGAGGAAGACAAGATGGTTGGCATGAAAAGGCCATACCCGTTTTCATTGGAAAACGTGCCAATTCCATCTTTTCATTGCAAATTTCCTTCGGCTTTTGTGTCTCCCATTTCAAGATCAGATGAATCAGCTTCTTGTAGCAATGGAGGCACTATCACCATGGAACCTGCACATCCAGTTTTCAGAGAGAATCCTTCAAGCTCAGGTCTCATATCCGATACAATAACAAAGAAATTCATCGATGAACACCAAGGTTTGACTTTGACCAGAGATTTTCTCAAGTTAGCCCCTCCTCAAGCATCTTGTATA