| mature miRNA: TGCCAAAGGAGAGTTGCCCTG species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|83981808|gb|DW127917.1|DW127917 CLSX4445.b1_I08.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX4445, mRNA sequence TGCCAAAGGAGAGTTGCCCTG EST sequence (targeted fragment marked with yellow): CGGGGAAGCGAACTAATTGCAGGGCGTCTCTCCTCTGGCAGAAAACCCTAATTAATTTTCCCATTGTCGAATGATTTTGGATATATGGAAGATTTAGAACGCTATTTGCCAAAGGAGAGTTGCCCTGTATCTGGTTTGCTTAATCGAGTCAAGAAAATGAATGAAGGTGTGGATAAGTTCATAAAGGGAAAACCAAGCATACTATATAGAACATGGTACGCATTGTGGTGTGGCAACTCATGCACGATCAACAGATAAATATTGTCTCTAAAACCAGAATCATAACAATGTGGCAAAACAATTGCCACATTGTTTTTTTGGAGCCACAACCTAATTGTTGAATGCGTTAGCACGTCTTACTTATTCAAATAGTGGAATCTTTCTTAAGAGAATCATAAATTGTAACTTCGAACTTTAGGGTTGGATTTTAATTTGAGTTTGACATATATAATTTTTAGTTTGTACAAAACTACGTGTGTGATTTTGTCTATATGATGCACACATTATCATTGTTTTGAACTTTTTGATTATATCAATTTGTCTAAGACGAGAGACAACCA | |||||||||
gi|83995620|gb|DW141729.1|DW141729 CLSY9793.b1_A02.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY9793, mRNA sequence TGCCAAAGGAGAGTTGCCCTG EST sequence (targeted fragment marked with yellow): CGGGGGAGGAGCCACGTGATGTTTCTTGGCTACAAACGGTGCGGAAGCTAACGGATCATGGCTGCTTTAAAGTTTAAACCCGCAGTTAGCGAACTTTTCTCCTTTCAGGGAAATAAATAGATCATCTTCTCAAAATAGCCAAATTTCCTTCTCATAATCGATAATTATCTCTCTTAGTATATGGTGCCTCGTTTGCTTCTTTTTCTGTATTATCTTTTTTCGGTTGATTCATCTTCTTCGTAAACAAACTCTCCGGGCAAATCTCCTTTTGGCAATTTACATATCTGGCTTCTTTAGTTCCTTTCGGAGCCATTTATTTATATATATAAATATAAATTAATTAAATAGATAAACTCCTTCGGGCAAATCTCCTTTGGCAAATCCAGAATTCATTTCTGGTGAAAACTTTGATCCAATTTATTTGGGGCAAATCTCCTTTTGGCATATCGGGTGTCTCTTCCAGACCCCTCTTTATCGGGCAAATCTCCTTTGGCAATTATCTCCGGTTTCTTTGGAGATCCCATCACTCTCTATATCACAAGGATTGAAGTGATGGATGTGTTTCTAAGTGATTTCGATAGCTACAGTGAAAGCAGTAGCTCTGATGATCAAGAAGACGATGAGTTCATGTACAGTGGACAAGCAAGCTGTATCCTCTCAAATCTTCAAGAAACCATTGGAAAAATCGATGATTTCTTGTTGTTTGAAAGAAGATACGTTCATGGCGACATCGTTTGCTTGATGAAAGATCACTCACAAATGGGAAAAGTAACAAACTTTGAGATGCTTGTAGACTTGGAGAATCTTAACGAGAAGAAACTANAGACATCAACTCCAAAGAGCTTCAAAGAATCCCGTTCATCTCAATGGGCGATTTCGTAATTTTC | |||||||||