| mature miRNA: TTTGGATTGAAGGGAGCTCTA species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90498569|gb|DY960427.1|DY960427 CLSM10761.b1_A03.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM10761, mRNA sequen TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CGCGGGGTGGGAGAGAGGGCCCCCTTCAATCCAAACCCTCGCCTCTTCCCCTCACCATCACCGGTTAATTCTCTCCGGCGACTACTCCTCCGCTCTCCGCCTCATGGCTTCGCGCCATTTTTTTGCTGGAGATTAGTTGCCGGAAGGTAGAAATGTCGTTCTGATTCGACGAGCTCCCTTTTTTCTTTCCACTTTCGTCGTCATTGTGGTTTCTATGGCGTCTGCGATTTTATCAAGCAGAAATGAACGAAACTCGGGTGATTTTATGAATAAATTTACTGAAAATAGTCATCTAACTTTCTCCAGATTACAGAATATCACTTGCCCTACTCCTCACTCTAACCCTAACCCTAATTCTAGCCGTTTCTTTAGCAGAAATGTTCATTGGAAAAATCAGGAGCAAATGCGGTCTTCTGGTCCGTCTGGAGAGGTGTTTATCGGTTCGTCGATCAATTCCGTACCGGCGAGCTCTCATGGATACAGGTACATTACCTATCGTCTTGGTTCGTACACTAGATTAGAGCTTAAGGAGTTGAAAAAAAAGTTGGTTCTGGATCTGGAACGGGTGAGGGACCTCAAGCATTGGATCTGTTCGACGCCGATACCCAAAAGGCATTATCAACCACCGCCGCTGGGGTTACCGCCGGCTCCTGAAGCTGATTTGACGGTGAAAGAACGGCCAAAGAATGCAGTCGGTCAGAAACGTGCGAAACCGTCTTCTTCAGCCAGGGATACGAAGAAGCATTGTGGTGCTCGTGTGAAGAACAATACGCAGAGGAGTAAGCTCGTGATGAAGAAATGTAGTCAAATTTTAGCTAAGCTGATGAAGCACANACACGGTTGGGTTTTCAATACTCCAGTTGATGCGGCTGCTTTGAAGCTAAGTGATTATCAT | |||||||||
gi|90499528|gb|DY961386.1|DY961386 CLSM11735.b1_M06.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM11735, mRNA sequen TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GACTGCATGATGCCACATTTGGTGGTGCTAATGCTAATGCACCCGGTGGACCAAGCATGATGGAAAGAGTTCCCCCAATGCCCTCCATGGTCATGATGAGTGGTGAGAGTCGGAATCTGGTAGATAGGCAAAGAATTGGAGATGAGGCCATGGAAAAATCTAGAAATTTGAAAGTGACAGAAATCTCTGAACCATCACAGTGTCGATCCTCAAGGCTTCCAGATGATACATCCTCTGCAATGCGGGTTACAAGATTGATTTACACTAATTCAGGAGTTGCAGTCTTAGCTCTAGCAGCCAATGCTGTCCATAAATTGTGGAAATGGCAGAGAAATGACCGCAATTCAACTGGGAAGGCAACTGCTAGTGTACTGCCTCAATTATGGCAACCAGTGAGTGGTATATTGATGACAAATGATATCAGTGAAACAAACCCTGAAGATGCCACCGCATGCTTTGCATTATCAAAGAACGACTCCTATGTTATGTCTGCTTCTGGTGGAAAGATTTCTTTGTTCAATATGATGACCTTCAAGACAATGAGTACATTCATGCCCCCTCCACCTGCAGCAACCTTTCTGGCTTTCCATCCACAAGATAACAATATTATTGCCATAGGCATGGAGGACTCTTCAATCCAAATATACAATGTCCGAGTGGATGAGGTGAAAACCAAACTTAAAGGCCATCATAAACGAATAACAGGCCTGGCCTTCTCTAATGTCCTTAATGTGTTGGTATCTTCTGGTGCTGATTCTCAGTTGTGTGTGTGGAGCACGGACGGATGGGAGAAGCANNACATCAAACAATTACAAATTCCAGGAGGACGTGTCCCTGCTGCCCATGCTGATACACATGTCCAGTTCCACCAAGATCAAACTCACTTGCTA | |||||||||