| mature miRNA: TAGCCAAGGATGACTTGCCT species: Lactuca serriola database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22437581|gb|BU003186.1|BU003186 QGG34F23.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGG34F23, mRNA sequence TAGCCAAGGATGACTTGCCT EST sequence (targeted fragment marked with yellow): GGCTCAAGTAGATAGTAATTTTGTTGATTATGGTTGGACAAATGTGGGGAGCTTTGATGATCTTGATAGAATATTAAGTGATGTTTTGCAGCAACAATGACTTGGTGTATGAAAACACAAACATTTCATCTATGGAATCTCCAAGTTTGCATATAAAAGATGTAAACACAAATTTGGAGCTGATGGAATGCAGTGAGGGCAAAAATGGAAAGTCAGCTTCTTCAAATAACGCACAAAGAATTGGAATGCCAGATGAAAACGGAATCGGAATCAGAATCGGAATCGGAATCGGAATCAAAAAGGCATGTGATCCTTGGTTTTCTCTTGGAAATGAAGGTAAAGAATTTGAAAGAGGGTATACACAACATATCAAAATACCTTCTTCAATGTCTAGAAATCAAGAAACTGAATACAAGAAGTCTCCTTGCGGTTATAAAAGCATAATGGGAAATCAACAATTTGAATCTGGAAGCTCTTCTTTGATGATGGCTTTGAGTATGATGACACCTCAAGAAAAGATTGAAAAACTAAGCGAGCGTCAACAAATGAGGGCATTGGCTGCTATATGTAAA | |||||||||
gi|22401655|gb|BQ984130.1|BQ984130 QGE20M15.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGE20M15, mRNA sequence TAGCCAAGGATGACTTGCCT EST sequence (targeted fragment marked with yellow): GTGGCGGAATGGTAAATTCATGCAATGGTGGGGCCCTCATGTATGAAAACCAAGATGGGCTTCAGGAGGGAGGTTCTTTACGGCAGCAATGGTCAACAATACCTTCTAGTCAAAATTCACAGAGGGCAGTTGCCATGAAATGAAATGATATGATATATCGCATGATTTGGCTGGCAAATCATTCTTGGCTGTTTTTATGTGGAGAAAGGGTAAAAAGGTAAATGGACTTTTTAGTGGGCTCTTACTTATTTTCGGATTCTTTTTTAGTGTTATGTACAAAATATAATGCTGCTAGATGAGCTCTTGATTTACATCTTATTAGACAGTCAGAAATCAATACAATTTAATT | |||||||||
gi|22448136|gb|BU013741.1|BU013741 QGJ5H15.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGJ5H15, mRNA sequence TAGCCAAGGATGACTTGCCT EST sequence (targeted fragment marked with yellow): TCGAATAATGTTGCCTTTAAACTTGAGCAATGATGATGAACCGGTTTTTGTGAATGCAAAGCAATATCATGGAATAATAAGACGTAGAAGATCACGTGCTAAGGCAGAAATGGCAAATAAAGTTTTGAAAAATCGTAAGCCATATATGCACCACTCACGTCATCTCCATGCAATGCGTCGACCAAGAGGAAACGGGGGTCGTTTCTTGAACACCAAAAAGGAAAACAACTGCAAAGATGAAAATACCGATCAAGAAAAAGACAAAAACCTTTTAAAGTCTCCTAATTATACAATTTTCATGTCCAATCATCACAACTTCACTTCTCATCGTGAACCAAATAACATGTTCTCAACGGGAGACGTTAAAAGTCTTCCGATTGGAAACCTTTCGGTGGTCTCTTTTTCAGAAATGATGTCCGGGAACACAGCTCCCAGACATAGTTTTGGCATGCATGGCAAATGGGTTGCAGCGACTGGTGGTGGTGATGGTCGCTGCAATTTTACAGTCTAATGTCAGAGATGAGGTCCTGATGTGTTGTATGTATATCAGCATATCGGGACCTCATATCTTTACAACCAGATGAAATATTTGAAATATTTATCTGGTTGTCTNTGGCAACTCATCCTTGGCTTATTGTGTTGAGGTTGTCTCTAACCTTTCTCACGTTGCATTTCATAGTGTGCAATGTTTTGAGAGTTGTATGAGATGGTCATAGCCTTAAT | |||||||||
gi|83908271|gb|DW110351.1|DW110351 CLRX7314.b1_C05.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX7314, mRNA sequ TAGCCAAGGATGACTTGCCT EST sequence (targeted fragment marked with yellow): CGCGGGAGACGGTGGTCTTCAAGCTGAAAAGACAACACCAATAGTTGAAAATGTTTATGCTGATAATTACTTCAATGGACTCTATACCCCCTATGGACCACACCCTATTTTTGACCAGATTCAACCTCATATCATACAAATAGCTCCTGCCCGAGTTCCACTCCCCATAGATCTCTCAGAAGATGGCCCTATTTATGTCAATGCAAAACAATATCATGGTATTCTCAGAAGGAGACAGATTCGAGCCAAACTTGAAGCTCAAAACAAACTTGTCAAAAACCGAAGGCCTTACCTTCATGAATCTAGACATAAACATGCTTTGAATAGGGTTAGAGGTTCAGGTGGGAGGTTTCTTCCCACCAAGAAACCTCAACAACAATCAAAACCTGCAAGATTCTTGACCTCCCATTTCCCTTCAAGCTATCAAGAAGCTAATCAATCTGGAATGGAACATGAACATTATCATGGGTATAGTGGCATTTCATGGGGGATAAGGGGAAATGAGGGGTTTTTAAGCACATCGGGTGGACAATCATGATTGGTTTGGTGGTTCTATATATTGGCTGGTGGGATAACACACCGGTTGGGCAACTCATCCTTGGCTTTGTTACTAAGTTTTTGATGTTCATTTTGTGTTTCATCGAGCTTAGGTTTATTGTATTTGTTTGGGAAAAGATTTGTAGCTTACTTGAATGGTGTTTGGAAATTTGAATTTCATAAATTGAAGGTTGGTTTATGATTATGGACATTGGAATTTGTTATGAAATTGGTTGGGATTGTATGTATAATTACATAAAATATCAAGTGTTTGAGTTTTACGAGA | |||||||||