| mature miRNA: AGGAGTGGGAGTGGGAGTGGG species: Lactuca virosa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|84032490|gb|DW167809.1|DW167809 CLVY6200.b1_O13.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY6200, mRNA sequence AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): GCGGGGATCGCAATCCACTCCTATTCTTTGCTAGGGTTTGTCTGAACTCTGAAGGGTTTCCGATCAGGAACTGAGCACTACTGTTGCGCATGGCGAAACCAGGACGTGGTCGTCCGGCGGCTCCTGCGGGGTCTGGTTCAGGCTCATCCTCCCGCTCTCGCTCTCGCTCCGTATCCGGATCCTCTCGCTCAAGCTCTCGTTCTAGATCTCGCTCCAGATCCTACACTTCTTCTTCTTCTCCGTCTCGCAGTGTCAGTTCTCGTAGTCGCAGTCCTCCTCCAAAGAAAAGTGCTGGTGATGGACCAAGGCGAGGACGCTCTCCACCACCTCAATCTAAGAGGGCTTCTCCACCTCCAAGGAAAACATCTCCTGTACCTGAATCACTTGTTCTTCACATTGGTCAGCTCACAAGGAACGTGAATGAAAACCATCTGAAAGAAATATTTGGAAACTTTGGCGAAGTTGTACATGTACAATTGGCTATGGATCACATTGTTAATCTTCCAAAAGGGTCTGGATATGTCGAGTTCAAATTACGATCCGATGCTGAAAAAGCCCTATTACACATGGATGGTGCTCAAATTGATGGAAGAGTTGTTCAAGCCAAGTTCACTTTACCTGAGAGGAAAAAGGCTTCTTCACCACCTCCTAAGCCTTTGCCCACTGCTTCAAGAAGAGATGTTGCTAAAAATGATAATGTAGCTGCCGATGCTGAAAAAGATGCACCAAGGCGTGTAACAGCTGCGTCTCCTCGGCGTAGACCTCCATCACCAACTCGCCGGAGGTCTCCTGTAGGCCGA | |||||||||
gi|84034050|gb|DW169369.1|DW169369 CLVY7657.b1_B20.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY7657, mRNA sequence AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): GCGGGGATCATTTCCACTTCACTTCCCCTTTCACTTTCACTCCACTACTCTCATGACTTGTCCTTACTATCCGCCCTGTACTCCAAACACTTGCGTACATGTGAAAACCCAACCTCCCTTCTTCCAGTTCCAGCGAAGTCTAAATTCTCCCACAGAACAACAGCAACTCCCCCTGCTTCCCCCCTCTAGCAGACACCCAGAATACCCCCAACAGCCACTCCTTTCTGCATATGACAACACCGCTCATTCCCTTCCCGCAGTTCGCCACCATCACCCTCCCCCTCCTACTCCTCTCCTTCCACAGGACAGATACTACTACAGTAGACCCGTACTTTCGCCCTCCTACGCCCCCTCAACTCAACGTTCTTACGCTCCCCAAGAATCCCACCGTAGCACATCGCCCGTAACCACACGCTCGACGCCACCCTTTCAACGACACCAACTAGACACTGCTTCTTTCATTCCTCAGAATCGACCAGACGGGATCGCCGATTCTTCCAAAGGCGAGTCTACGTTCACCGGAGAGCACTCAAGTCGAAACCGACTGTCTCCTCCTCCCGCAACCGCATCGTTTCAGCGAAGACGTAATTCCGGTCACCAAATTTCCGTTTGTGCAGATGACGTACCCGGAGCATCCATAAAAGTCGTTCTGCAAAAACAGACAGGAGATATCACAAGCATCGTCGAAGGCGATAACGAAAGGCTGATGATATACGAAGGCTTCGGATACGATGTTCAATTGAGCTGGAAACCATGGTCCCCTTTGCAGTCTGCCGGAAAGGGAATATACGCACGCATCTACTATGCCGTCGTCGGCGGAAACGGACTCATGTACGATCTGTATCCAGCGAACTGGTTCCATTGGCAAGAGCGAAAATCCAGCGTGGAACATTATCCGACATGGTCCCGATGCTACACGTACGTCCTCGATCTT | |||||||||
gi|84022413|gb|DW159683.1|DW159683 CLVY11793.b1_A22.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY11793, mRNA sequen AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): GGGGTCGATCAGAGATAGCAAAAGGGATTCAGATTCTTCTCACCCAATCTCACCCCAAATCATTCACTACTCTCGATCATGTTGTTAATCAGCTTGGTGAAAAACTAGGGTTTGATTTGTCTCATAAGGCAGCTTTCATTCGTGACCAAATCAACCTACTCCTCTTCCACTCCCACTCCCACTCCCACTCCCAATTCCGCAACCCTCCACCGCCGCCCCAACCCTCCGTTTCTTCACCGGTGACCACCTCTGGGATACCTAAAGACCAATTTTCCTTCCAACATCAACAACCCCAATTTTCCTTCCAACATCAACAGCCTCATGCGCCTCCTCCTCTTCGGCCTCAATATCACCATTCTCATTTTGCCTTTGAACATCAAGAACAACGCCAGAGACACCCGGTTGAGCTTAACTTCGGTAACCCTGAGGCGCCGCGGCCTCCTCCAGAGCAGTCACGAGTGCAGACATTACCGGAGGTGAAGTATGAAGGTTTCCCCATTCAAAATGCGGTTTGGAAATCGCCCGAAAAGATCAAGAAAGGTCCTTCAGCCCACAAAAGAAGAGGTGGGCCAGGGGGGCTGAATAAGCTCTGTGGTATTTCACCTGAGCTACAAGTGATTCTAGGCAAATCATCCTTATCAAGAACCGATATTGTGAAGCAACTATGGGCCTACATAAAGAAAAACAACCTCCAAGATCCTGGAAACAAGAGAAAGATAATTTGTGATGATGCTTTACGTGTTGTTTTTGAAACCGATTCCACTGATATGTTTAAGATGAATAAGTTGCTTGCTAAACATATCATCCCACTTGAACCTACAAGTATATATATAAAGTCACCCAAAATATAATAGTTTTTCAGTTTTTCTACAATTTGCCCTTTTTGATTTAATTTAAATTACAAAAATGTTGATTTTTCAGAGGCATCATCT | |||||||||
gi|84015745|gb|DW153015.1|DW153015 CLVX4839.b1_M10.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVX4839, mRNA sequence AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): CTCTCTGTAGACTGGATTCCATCTCCTACTCCTACTCCTACTTCAATACATGAATTATGTTTATAGTAACACAGATCGGGAATCTAAAACCCTAGCTTGTCTCAATTCCCATTTAACATCGGGTTAATGTCGTCTAAAACATTGCCCTATTCTATCAAAGACATACAATACGATAACGCCGAGTTTCGTCGAAGATCCTTGTTCCAGGTCATTTCACAGATTTTTCTGAACAAAAAAATGGTGTGTTTAAGTATGTCATGTAGCACAGGAAAGTTTCTAGCTGTATTAATGATCTTTGGTTTGACATATCTTGTGATCACTCATGCAAGTCCTATCCATTCTGTAACTAGTGGTGTAGCTAGAGCTATTGGGTCTAAACAAGGTGATAATTCCATCATGGATGGTGGTGGCATTGGAGTCAAAAGATTTTGGAGAAAACCACCCAGGCTTCCACCTCATTTGTCTCCAGATGAAATGAATATCAGCAATAAATCCACACACAACCCTGCAAAATCAAATCTTGATTCTGAATGGGTGGCTAAGCAAGAAAGTGTTAAAAAGGCATTTATTCATGCGTGGTCTGGATACAAAAAGTATGCAATGGGTTATGATGAACTTATGCCATTAAGACAAAAGAGTATCGATGGGTTAGGAGGATTAGGTGCTACTGTTGTGGATGCTCTAGATACAGCCATGATCATGAGACTTGATGATGTTGC | |||||||||
gi|84033493|gb|DW168812.1|DW168812 CLVY714.b1_D12.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY714, mRNA sequence AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): TCAATCTACACTATACCCTCTCCATAATCGATCTCTGCAACAAAACGAATATGTCGGATTCTAATACCAAGTCCAAAATTCAGAGCATGCGCGAATGGGTCGTTGAGCATAAGCTTCGAGCTGTTGGGTCTTTGTGGTTAAGTGGTATTGCTGGATCGATCGCTTACAATTGGTCTCAACCCGGCATGAAAACCAGCGTTAGGATCATTCACGCAAGGTTGCATGCACAGGCTCTGACATTGGCAGCATTAGCCGGAGCTGCAGTTGTGGAGTACTATGATCACAAATCAGGCACAAAGTCAGAACGCTATGCCAAGTTCCTCCCTCCTATTGATTCATCATATTCCCACTCCCACTCCCACTCCCACTCCCACAAAGACTAAATGCAAGTCTGGGTGATTTTTGCAATCATATTGTTTAATTGTAATTATTCACATCAAAATGTTGAATATGGAGTTTTCATGTAATAACAAAATAATCAAACTTTCAGGATTCATACTGTAATCACGCTTCTTTATGGAATTTGATGCAAAAAACAATACATAATTACATTACTCTAAAANGAAAAAAAAAAGAGAAAAAAAGGGGAAAAACATGTC | |||||||||
gi|84025334|gb|DW162604.1|DW162604 CLVY14543.b1_N12.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY14543, mRNA sequen AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): CGCGGGGGATCCAATGCACCGAGAAATAAAACATGAACCCTAGGTCATCATCATGAATTCTAATGGTTGACGAACATCGTGCTGCTGCTCGTCTCTCCATTTTTGGTATCAGAATGCTTCTAAAATACAAATGGAAATGACTGTTGTGCCCTTGCGGTGGATAAAGGAACAAAAGCATCCAATCCGGTGACGAAAATGGCTTGAATTATGATGTAAACCGACGGCGATTCACGATATTGAATGCTTTTGTACCCATCGGAAAAAATGCACCACTTATCATCATCGTCGTGGATGCTCCGCCGCCTTTGCTGTCATGCAACGCCTTCCTTTTCGCCCTCTACCGCCGTTTATTCTACTTGTGCTGCTACTCGCACTCCCACTTCTTCCAAGAAGAAAAAACTCGTTTTCATGGGTTCTCCCCCGGTCTCTGCTTCCGTTCTCGAGACTCTTCTCGACGCATCCTCCGCCGCTGATTCCTTATTCGAGCCATTGTTACTCAGCCACCTTCGGGAAGAGATAGGGGAAGAAAAGTGATGCCATCACCTGTAGCACAACATGCTCTCGATAGAGGTTTTCTTG | |||||||||
gi|84039088|gb|DW174407.1|DW174407 CLVZ538.b1_D15.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVZ538, mRNA sequence AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): ACACCCAAAACCCAACAAAGCTAAAACACAGCCATGAATGTAGAAGAAAGAAGTTGAAAAACTCAAAGTAGAGATCCAAAGACTCGGCAGTAAGCAAGACGATGGCTCTTACAAGGTGACATTTGGTGTGCTCTTCCACGATGATAGATGTGCGAACATATTTGAAGCATTGGTTGGGACATTGAGAGCAGCGAAGAGGCGTAAATTATTGACATATGATGGTGAATTACTTCTTCAAGGTGTTCATGATAATGTTGAAATTGTTCTCAAACCCACTCCCACTCCCACTCCCACAGCAGCAGTATAATCGATCGCTTCAAATGTTTTTATCACTGTTTTCTTGTATCATTTATCATAATTTGTGTTTGTAACTTTGTATTGTAACCTTGACATTGTGATCATCATCATCATATGGCTACATAATCTGTGCTTCAAAACTGATC | |||||||||
gi|84016264|gb|DW153534.1|DW153534 CLVX533.b1_J13.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVX533, mRNA sequence AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): GCGGGGACGAGACAGTTTTCAGGCTTTATGTCCATGGTCGCAGAGGCACTCATTAAATTCTCCAGCTGTACGCCGAACTCCCGCCATGTGACTCTGCGTCCCCACTTCCACTCCCACTCACCATAAACCTCCAAATCCCTTATTTTCCTTATCTCTGTAACTCAAATTTCCCCTAAAACTACATCTATGGCGCCATCTGTTCTTCTTAACACGCAAATCGCACTATGCCTGGTGTTACTCGCGCTTGTACACTCCTCAGGCGCCGATGTATCAAACGCCGTGAAGGAGCACTCGCTACGTCTCATCACCGACGAGCTTGACTGGCCGACATCGTCGATGTACGACGGAATTGACGAGATCGATGGCGTAAACGACGAAGATGGCTCCACCGTCGCCGGTCGGAGATCTCTGTTCTGGAAGAGGTTTGGATACTACATTTCCTATGGCGCACTCTCCGCTAACAGAGTCCCATGTCCGCCGCGATCCGGCCGATCATACTACACTCATGAATGTTGGAGAGCCAGAGGTCCCGTTCATCCTTACACTAGAGGTTGCTCCGCCATCACTCGTTGTCGCCGGTGAAATCCGCCGCCTGAAATTACTAGGTTAGCGTTTGCTAAAGTTGAATCTACGTCTCTAATTATTTTTAAGGAGATGAGTTAATTATGTGTCCGTTTTTCCCTTGCTATCATGTTGATCGAATCTGTATCAACTTAATTGTGTTTATGAAACTTGAATGACTCCATTGTTGGATGAAGAACCTTGTATAATGTATTATGATTTTGCTCTTGAGAAGTTCTAAACTTTTGTGTG | |||||||||
gi|84033493|gb|DW168812.1|DW168812 CLVY714.b1_D12.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY714, mRNA sequence AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): TCAATCTACACTATACCCTCTCCATAATCGATCTCTGCAACAAAACGAATATGTCGGATTCTAATACCAAGTCCAAAATTCAGAGCATGCGCGAATGGGTCGTTGAGCATAAGCTTCGAGCTGTTGGGTCTTTGTGGTTAAGTGGTATTGCTGGATCGATCGCTTACAATTGGTCTCAACCCGGCATGAAAACCAGCGTTAGGATCATTCACGCAAGGTTGCATGCACAGGCTCTGACATTGGCAGCATTAGCCGGAGCTGCAGTTGTGGAGTACTATGATCACAAATCAGGCACAAAGTCAGAACGCTATGCCAAGTTCCTCCCTCCTATTGATTCATCATATTCCCACTCCCACTCCCACTCCCACTCCCACAAAGACTAAATGCAAGTCTGGGTGATTTTTGCAATCATATTGTTTAATTGTAATTATTCACATCAAAATGTTGAATATGGAGTTTTCATGTAATAACAAAATAATCAAACTTTCAGGATTCATACTGTAATCACGCTTCTTTATGGAATTTGATGCAAAAAACAATACATAATTACATTACTCTAAAANGAAAAAAAAAAGAGAAAAAAAGGGGAAAAACATGTC | |||||||||
gi|84022413|gb|DW159683.1|DW159683 CLVY11793.b1_A22.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY11793, mRNA sequen AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): GGGGTCGATCAGAGATAGCAAAAGGGATTCAGATTCTTCTCACCCAATCTCACCCCAAATCATTCACTACTCTCGATCATGTTGTTAATCAGCTTGGTGAAAAACTAGGGTTTGATTTGTCTCATAAGGCAGCTTTCATTCGTGACCAAATCAACCTACTCCTCTTCCACTCCCACTCCCACTCCCACTCCCAATTCCGCAACCCTCCACCGCCGCCCCAACCCTCCGTTTCTTCACCGGTGACCACCTCTGGGATACCTAAAGACCAATTTTCCTTCCAACATCAACAACCCCAATTTTCCTTCCAACATCAACAGCCTCATGCGCCTCCTCCTCTTCGGCCTCAATATCACCATTCTCATTTTGCCTTTGAACATCAAGAACAACGCCAGAGACACCCGGTTGAGCTTAACTTCGGTAACCCTGAGGCGCCGCGGCCTCCTCCAGAGCAGTCACGAGTGCAGACATTACCGGAGGTGAAGTATGAAGGTTTCCCCATTCAAAATGCGGTTTGGAAATCGCCCGAAAAGATCAAGAAAGGTCCTTCAGCCCACAAAAGAAGAGGTGGGCCAGGGGGGCTGAATAAGCTCTGTGGTATTTCACCTGAGCTACAAGTGATTCTAGGCAAATCATCCTTATCAAGAACCGATATTGTGAAGCAACTATGGGCCTACATAAAGAAAAACAACCTCCAAGATCCTGGAAACAAGAGAAAGATAATTTGTGATGATGCTTTACGTGTTGTTTTTGAAACCGATTCCACTGATATGTTTAAGATGAATAAGTTGCTTGCTAAACATATCATCCCACTTGAACCTACAAGTATATATATAAAGTCACCCAAAATATAATAGTTTTTCAGTTTTTCTACAATTTGCCCTTTTTGATTTAATTTAAATTACAAAAATGTTGATTTTTCAGAGGCATCATCT | |||||||||
gi|84023649|gb|DW160919.1|DW160919 CLVY12964.b1_H02.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY12964, mRNA sequen AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): ACACGCGATACACCAGAACTTCTTCCCATCCCCACCTCATGGATTCTCTTCCCCCCGAAACCCTAGCTCCCACTCCTACTCCCTATGATGCGTTGGATTACACCAAGAACTCCAGTAACCAGCATCCGCCGCCTGATTTTGGCTCAGCACCTCCACCCCCGCCGTCCGATTCCGACCACAATTTTTCTCATCAACTACAAATCGTATGTCAAACGGATCCCAAGCCAGACACAACAGATCCGAAGCCTGAGAATGGCGGCGTTAGGAGTGTTACTACGGAAAAGGATAACTCTGGCGTGGAGGAGGATACAACAAGCAGGAGACGGAGGCGGAGCAGATGGGACCCGCCTCCTACCGATGGAGATGCTGATCAGAATGGGGGTAAAAAGAGGAAGTCTCGTTGGGCGGACGACGAGCCGAAACCGGTGTTTCAGTTGCCGGATTTCATGAAGGATTTTACTGGAGGTATGGATATGGATCCTGAAATTCAGGCTTTGAATGCAAGGCTTATGGAAATTAGTAGAATTTTACAGTCTGGACAACAGTTAGATGATCGTCCGGAAGGTGCTAGGTCTCCTTCGCCGGACCCGATATATGATAATATGGGAACCAGAATAAACACTAGAGAATTTAGGGCGAGGGAAAGGCTTAACAGAGAGAGACAAGAGATTATTTCGCAGATTATTAAAAGAAATCCTGCGTTTAAGCCCCCTGCTGATTATAGGCCTCCGAAGCTTCAGAAGAAGCTGTATATACCAATGAAAGAATACCCTGGTTATAATTTTATCGGACTTATAATTGGGCCGAGAGGTAATACGCAGAAGAGGATGGAAAAGGAGACTGGAGCTAAAATCGTTATACGGGGGAAAGGCTCAGTGAAAGAAGGCAGGTTTGGGGCAAAGCGTGATTT | |||||||||
gi|84039088|gb|DW174407.1|DW174407 CLVZ538.b1_D15.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVZ538, mRNA sequence AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): ACACCCAAAACCCAACAAAGCTAAAACACAGCCATGAATGTAGAAGAAAGAAGTTGAAAAACTCAAAGTAGAGATCCAAAGACTCGGCAGTAAGCAAGACGATGGCTCTTACAAGGTGACATTTGGTGTGCTCTTCCACGATGATAGATGTGCGAACATATTTGAAGCATTGGTTGGGACATTGAGAGCAGCGAAGAGGCGTAAATTATTGACATATGATGGTGAATTACTTCTTCAAGGTGTTCATGATAATGTTGAAATTGTTCTCAAACCCACTCCCACTCCCACTCCCACAGCAGCAGTATAATCGATCGCTTCAAATGTTTTTATCACTGTTTTCTTGTATCATTTATCATAATTTGTGTTTGTAACTTTGTATTGTAACCTTGACATTGTGATCATCATCATCATATGGCTACATAATCTGTGCTTCAAAACTGATC | |||||||||
gi|84022413|gb|DW159683.1|DW159683 CLVY11793.b1_A22.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY11793, mRNA sequen AGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): GGGGTCGATCAGAGATAGCAAAAGGGATTCAGATTCTTCTCACCCAATCTCACCCCAAATCATTCACTACTCTCGATCATGTTGTTAATCAGCTTGGTGAAAAACTAGGGTTTGATTTGTCTCATAAGGCAGCTTTCATTCGTGACCAAATCAACCTACTCCTCTTCCACTCCCACTCCCACTCCCACTCCCAATTCCGCAACCCTCCACCGCCGCCCCAACCCTCCGTTTCTTCACCGGTGACCACCTCTGGGATACCTAAAGACCAATTTTCCTTCCAACATCAACAACCCCAATTTTCCTTCCAACATCAACAGCCTCATGCGCCTCCTCCTCTTCGGCCTCAATATCACCATTCTCATTTTGCCTTTGAACATCAAGAACAACGCCAGAGACACCCGGTTGAGCTTAACTTCGGTAACCCTGAGGCGCCGCGGCCTCCTCCAGAGCAGTCACGAGTGCAGACATTACCGGAGGTGAAGTATGAAGGTTTCCCCATTCAAAATGCGGTTTGGAAATCGCCCGAAAAGATCAAGAAAGGTCCTTCAGCCCACAAAAGAAGAGGTGGGCCAGGGGGGCTGAATAAGCTCTGTGGTATTTCACCTGAGCTACAAGTGATTCTAGGCAAATCATCCTTATCAAGAACCGATATTGTGAAGCAACTATGGGCCTACATAAAGAAAAACAACCTCCAAGATCCTGGAAACAAGAGAAAGATAATTTGTGATGATGCTTTACGTGTTGTTTTTGAAACCGATTCCACTGATATGTTTAAGATGAATAAGTTGCTTGCTAAACATATCATCCCACTTGAACCTACAAGTATATATATAAAGTCACCCAAAATATAATAGTTTTTCAGTTTTTCTACAATTTGCCCTTTTTGATTTAATTTAAATTACAAAAATGTTGATTTTTCAGAGGCATCATCT | |||||||||