| mature miRNA: GTACTCCCTCCGTCCGATAGC species: Leymus cinereus x Leymus triticoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159701139|gb|EG377324.1|EG377324 BG01006B2F02.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTACTCCCTCCGTCCGATAGC EST sequence (targeted fragment marked with yellow): CCGTTGCTGTCGGCACACTGAGGTGTATTTCAGAGTCTACAAGTTACAGGAAAAGTACATGGTACTAATGTGCTCTGATCTAAGAAGGTCTTCCATGAGACCAGGACTGGAGAAACCAGCCTATGGAGGCTTCTTTGAATTTGATCTTGCAAAGGAAAGGAAGATATCCCTCAGAACTCTGATTGATCGGTCGGCGGTGGAGAGCTTCGGCGGCGGGGGTAGGGTTTGCATCACGTCTAGAGTTTATCCGGCGGTGCTCGCCGACGTCGGCAGGGCCCACATGTATGCCTTCAACAATGGAAGTGCCACGGTCAGGGTGCCACAGCTCAGCGCATGGACCATGAGGAAGGCACAAGTGAATGTGGAGAATGGTTGGAGTGCTATTTAAAACAGAGGAGTAATTTGATTTCACTGCCTGGCAGAAATAAGGACATTCAACAGGAAAAAATAGCCTATCATTTCTTTGATCTCTAGTATTCATATATTGTAGTTACTACTCCCTCCGTCCGAAAATACTTGTCGGAGAAATGGATAAAAATGGATGTATCTAGAACTAAAATACATCTAGATACATCCATTCCTCCGACAAGTATTTCCGGACGGAGGGAGTACTTAGTAAGCCCTTCCCATCTCAGTTGTATCAATTTTTATAGAAACGCACACTAGTCATAAAATTCACGGGATGAGTACTTTAGTCACACATAAGAATCTCTTGAAATGTTTTAAAGTGGTTACAAGTCTCTGTGAGCAAACATGTCAAAAAAAAAAAAAAAAAATGC | |||||||||
gi|159766800|gb|EG377648.1|EG377648 BG01006B2F02.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTACTCCCTCCGTCCGATAGC EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGACATGTTTGCTCACAGAGACTTGTAACCACTTTAAAACATTTCAAGAGATTCTTATGTGTGACTAAAGTACTCATCCCGTGAATTTTATGACTAGTGTGCGTTTCTATAAAAATTGATACAACTGAGATGGGAAGGGCTTACTAAGTACTCCCTCCGTCCGGAAATACTTGTCGGAGGAATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATTTTTATCCATTTCTCCGACAAGTATTTTCGGACGGAGGGAGTAGTAACTACAATATATGAATACTAGAGATCAAAGAAATGATAGGCTATTTTTTCCTGTTGAATGTCCTTATTTCTGCCAGGCAGTGAAATCAAATTACTCCTCTGTTTTAAATAGCACTCCAACCATTCTCCACATTCACTTGTGCCTTCCTCATGGTCCATGCGCTGAGCTGTGGCACCCTGACCGTGGCACTTCCATTGTTGAAGGCATACATGTGGGCCCTGCCGACGTCGGCGAGCACCGCCGGATAAACTCTAGACGTGATGCAAACCCTACCCCCGCCGCCGAAGCTCTCCACCGCCGACCGATCAATCAGAGTTCTGAGGGATATCTTCCTTTCCTTTGCAAGATCAAATTCAAAGAAGCCTCCATAGGCTGGTTTCTCCAGTCCTGGTCTCATGGAAGACCTTCTTAGATCAGAGCACATTAGTACCATGTACTTTTCCTGTAACTTGTNNACTCTGAAATACACCTCAGTGTGCCGACAGCAACGG | |||||||||
gi|159773976|gb|EG382111.1|EG382111 BG01010A2F10.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTACTCCCTCCGTCCGATAGC EST sequence (targeted fragment marked with yellow): CGATTTTTTTCTTTTTTTTTTGCCGTCTTTCTAAAAGTAGAAAACTCAAAGTGTCTGGGCACAAAGTTACCGACTACGAGGAAACATATATATTGTCGCCACACCTAACATTCATTCTAACAACATACTCCCTCTGTCTCATAATATACTCACATATTGAATGTAATAACATCTTATATTATGGTACGGAGGGAGTACATGAAACTATCAATGCAAACCAAAGCTACACAGGCTATACAAAGTAACACGATTAAACTAAACTATCTAAGAACCTTCCAAAATCCTAGCTTCCAAAACCCTTTTCTGGTATAGTAGTAATGTCTTCAAAAAACACTACCTGAAGAAAGCTATAACTATCATCAATCTAACTGTTCGATTGTGCTCCTTCCAAGTTTCCAATTTACTTCTGGACTGCGCCGTCTGCACGTGATGATACAACAGTACTCTAACAGAAGACTGGAAGTAATCGTTGGCCTTCAGGTGCTCCCGTCACCATTTCTTCCACTCCATTTTGCAGCCAAGTAACTCACAAACGCCTATGGAGAAAATATCCTGACAGCTTGTACTATAACACTGTTCTTTCATGCAAAATGTATCGTTTTTGTATTGCGTATGACTGCAACATTAGAAGGCCATTTCTTGAAGAATTTTCAATGTTGTTTGATGTACCCATTCTAGATGTTGTGCTGTAATGCCAGATGTGTTCTTTGCATATATGCCGCCTAAGACCTTAGAAACTGTCTCAAGGAACATTCCAGGCCGGACAGGCTGTGGCTTGCGGCCCGTTGCATTTTCCCTT | |||||||||
gi|159748630|gb|EG391246.1|EG391246 BG01028B2B06.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTACTCCCTCCGTCCGATAGC EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGGCAATAACAATTTTATCTTAGCAGTTGCAGCTTGTACAAGTAATCACAGGACAGGGCATCTGGCGCTAAAATAATTACCCGGCATAGTCGTCCCATTCAAATAACTGGAGATGAGATCCTACAAGGAAAATATTTGAGCGACAAGGTTTCAATCGGAGCCATAGTTCGTACTCCCTCCGTTCCATAATATAAGAACGTTTTTCAAGCTAACAAGCTTACAAAAATGCTCTTATATTATGGGACGGAGGGAGTACTTGGTTGTTGGCCATGTCAACTGCAAGAACCCATGCCTTTGGGTGCAGGAATTTGACCGTGATGATCAGGTAAACAACAGTTCCGCTCTGCAGCCTCACCGTTCAGGTTGAGAACAGGCTGACATGTCCAGAGATTCTGCAAGTTCCGCTCTGCAGCCTCACCGTTCTTCTGAGCCTCACGCAGCATTCCACAACGAAGCAGTCCAGACCGCATTGTTCTGTCAATTCTGGTGTCAGAAGCGTTGACAGTTCAGTCGATCTTCCAATCCTCCAGAGCATCAGTAACATTCCAGCTGGTGTATGTGCTGAGTACCCAGTTATCGATTCTCAACCTGGGGCCCCTGGTTTAAGGGTCTTTA | |||||||||
gi|159657437|gb|EG391905.1|EG391905 BG01027A2C05.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTACTCCCTCCGTCCGATAGC EST sequence (targeted fragment marked with yellow): CGATTTTTTCTTTTTTTTTTTGAATGAATATTCTGCAAATTACATTTCATCAAACAAATACAAGTGTTACACATGCTTAATCAAATTACTGTTGAAGCACACACACACACCCAATCGTATGTATCTGTTGTAGTACACAGCCAAACTAAGACAAATTAATCTCACCAAACCAATGCATATAAATTAACACACGCACGCAAGAAAAACTACTCCCTCCATCCGGAAATACTTGTCAGAGAAATGGATGTATCTAGACGTATTTTAGTTCTAGATACATCCATTTTTATCCATTTGAGCGACAAGCTTTTTGGGACGGAGGGAGTACTTAACAACCGACGGATTGATTGATTGCATGATGAAATAAAATTTGGAATGAACAGCTAATAAATAACATACATGCATGCATGGATGCACTGGCGATGCATGCATGCGCTGATTTGCCGGAGGAACTGATGGATTAAGCGCACTGGAAGCCCTTGGGGGCGGTCTTGCCGCAGTAGTTGAGGAGGAGGCTGAGCTTGACGGGGATGTTGAGGACGATGCCGAGGACGTTGGCCTTGAGCGCGGTGCNNNGGCACACGGCGGCCTCCAGGTCGGCCAGGCCGCCGNNGNNNCTGCAGCACTTGTCGCCGCCGCCGCTGGGGGGCTTGCCTACGCCCACGCTCACCAGGCCCAGCACGTTGGCGCNNNCGCCCAGCTTCAGCGTGTCTGTGGG | |||||||||
gi|159689265|gb|EG378259.1|EG378259 BG01006B2A01.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTACTCCCTCCGTCCGATAGC EST sequence (targeted fragment marked with yellow): TTTTTTTTTAGTCTGGCCCGCCCAACTTTTTCTTTCAAGCTCCGCCACTGTACATAGCCATCCAGGAACATACACTCATCTAGCCATCCAGGACACACACTAGGGAGCTCGTCCATCCTCTGTAGGGCACCTAATACAGGAGATGAAAAGCACGAGGTGCTGGTGCGTCAACACCAAGCTCGACACCATTATTCCTCCGACAAGTATTTCCGGACGGAGGGAGTACAATAGTGACAGGCAGACCTAGCGTTGTCCTGTTAGTGGTGCATCTACCACCATGTGTTCAGTCCTACATGGCCCATCGTCGCCCCATCACCGGACTTCGCACCATCACCGTGCGACCACAAACACTCCAAGAGAAAGCTTTGCTGATGTGCATATGGGTACGCCCAACACACAGATTGTCTTCACTGATAAATTATCAATACACTATCAAGTAAATTGTCCCCTCTTAATTATTGCCGAAGCTCTGCTCCGTCTTAACTTATTAAAAGATGAAAGTAAAATGGAATCAAGGGGGTACAAATAATCAATTTATAAAGAATAAATCGTGTCATTGCATATAGCTAATACAATTTATTAACTGTATTTCCTCGGTCGGTCATGCCAATTTGCGGATAAGGTAGGGGAGGATGCCTCCATGGTTAAAGTATTCCAGCTCCACCTGTGTGTTGATGCAAAGCGTGCAAGTGAAGGATTTCCCATTTTGTGTCATCACGGTCACATCCTGGCCCGGACGAATCTTGGTAATCTCGCCAGGGAGNTCGATGGTGAAACGCTCATGCCCACTGAGGTAGAGTGAGTCTGCATCCTCGCCGTCCTTAAAGC | |||||||||
gi|159750254|gb|EG378458.1|EG378458 BG01009A1F11.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTACTCCCTCCGTCCGATAGC EST sequence (targeted fragment marked with yellow): GCATTTTTNNNTTTTTTTTTTGCGGAGTACAAAGCACTGCTAACATTCTGCTGGAAAGTTTGGTCGCTGTGGGGTACTCCCTCCGTCCGATAGCTTGCAAAAACGTTCTTATATTATGGGACGGAGGGAGTACATTTTACAATGTACAAGGAGTCATGCGTGTTCTGCCAGTTCTTTGATGTCATATCCAGGATTTCACAAGTACTTTATGCATTGTCATCCCAGGAAACAGGTTTCACTTTCAAATGTTACATAAATAATAGCCTAGTCAAAAGTGAAACGAACCCTAACACTGATTTTACTTTATCACAACATAGCGGCCTCAACTACCTCCACTTGTCTCTTAGTTCCTTTTTCTCAGACCAAATCCAAGTAACGAAAAGAGCAGCAACCAATGCGACAATAGTAATTAGAAGAAGGGCATAACTGAATTCATCGGTGAGTGAATCATAGGTTCTTGATGGAGCAAGCCGAGTGTAGAAGAGATCCACACCATATGTGAAAACAAGAGTAGTGGACTCCAACTTTGCAGGAATAGAAACAATTCCTCGCAGGGCTTCCACTTGAAGAGAGTGCGTCACATAGGACTGTGGAATAATAGGCAAAGAATCTGTTAATGGTATAATACCCTCTTCTTTCTCTTGTTGTGTGGGATTCAGTGAACGGCGTGGGTCAAGAAAGCGCTTGTCAAGTGCCAAAACCTGGTCACCAATCGTGCCAATGNNNAGCTGCTTGGAAGTGATACCCTTGGCTGTTTGTGTAACTGCCATTGCCT | |||||||||
gi|159669112|gb|EG385375.1|EG385375 BG01025A1G10.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTACTCCCTCCGTCCGATAGC EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTAGGGAGAGAAAAATAAATATACTGGGAGAACCTTCCAATCCAGAAAGAAAAAAAAAGTAATGTTACATTACATGGATGAAAAAGATGTACTCCACGTCACTTATTTTGGGACGGAGGGAGTACCAAGAATACATGGATGGAATGGAATACAACATCAATTACATGTTAGATGTTCACAGAGACAGCCTACCTAATGCTTCAGCAGCAACTTAAGCGACAGTGCATGTTAACACATGCTGGTACTTCAGTGACTACTTAATCCATGTCGGCGTTCGTCACGGAGGACTGAAGCGCGCAAGCCACGATCAAGGTCCACTACTTGGCTCCGATAGGGAGGATCCCACGCGACTAGGGTTCACCAACTGTCACCTGACAGTGGAGTACATGATGCATTCCCTGGAGGTGAAGTGGAAAGGCTGGTGGGGAACAAGGTTCGGTCGTGGCCCATATATCTTGATCTGCCGGACATGAGTGTCCCTCCCGTTCAGGTGATTGGCCAACACCGCGATTTGGAGCATAAATGTATGAATGAATGTTTCTCGGGGATCAGTGCCAGATAACGATATATGAACCCATCCTACAGGCTTTGAAAGGTCCACCGTTTTAATTTCCTTGAGATTGTGGAAGCCGTCGCCGGCCCGGATGGAGATCTTGCTCGGCGTGTAGCTCTCGTCCAGCTTGAAATCCACGTAGAGCACAACAAGCTGCAGCTGCACCTTCTTCTGGAACTGGATG | |||||||||
gi|159658847|gb|EG396409.1|EG396409 BG01036B1A11.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTACTCCCTCCGTCCGATAGC EST sequence (targeted fragment marked with yellow): TGCTACATATAGCTTCTATTTGTTCTCACTGATCCCACAATTCAACCTAGTCACAGTTACTTGTCTAAAATCAAGTTGAAGGTCTTTGCAATTACTTGATATGTGTTACTGGATTAAGCAGCTTCTATCTGTTCTCAAGTGATCCCACAACTCCACTGTAGTTGCAGTTGTCTAAAATCAAATGGTAGATTTTTTCTCAGAGTTATTATTGCTGGATCAATCTTCTGATGTTACTGCTGTCGGTGCATGAAGGTCTCCATTTCTGGAAGACTCCATCTGCATCCGGTCAAGCATTATAGTAGTTTGCACAATATGGCCTTTGTTACATGTTTGGTGATCGGTGTTCTTCGTAGTATGCTGGGAGTTTATCACTTAATATGGGACGGAGGGAGTACTATCGAGCAGCAGATAAAGGGTTGAGCCGAACAGAAGCTCTCTTTCTTGGGAACTTTAGATGGCTACCATCAGCCCATCAGTCTGCTGAGCTCATCTGTTTCCCTGAAGAGTTAGTATGGGAGTATCAAATAGACATGTATCAGCAACGTCATCAGTCTGCTGAGCTCATCTGTTTCCCTGACTGAAGAGTTAGTATGGGAGTATCAAATAAAAATGTATCGGCAACGTCAGAATGGTTAGGAACCTTCATACAACAGTAACTAGAGGCAATACCAGAGCAATTCGTTCTTCGAAAGCCTGAATATCGCTGTTGATATTTTGTCTATAGTAAGCACACTGCATGCATGTCCCGATGTCCGGTTATTGGCTTTCTCAATATTTCCCTTC | |||||||||
gi|159776984|gb|EG380841.1|EG380841 BG01005A1F12.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTACTCCCTCCGTCCGATAGC EST sequence (targeted fragment marked with yellow): TTTTTTTTAGTTACATGTTATTTTTAAATTGATAAATGTAGCGGCGGTTGGCCAAAATTTATACACGTACCTCACGTTACACAGTGCATTGCAGAGGCAAACTCCATTAATTTCTACTCCCTCCATCCGAAATTACTTGTCGAAGAAATGGATGTATCTAGACGTATTTTAGTTTTAAATACATATATTTTTTATACATTTCTGCGACAAGTGTTTTCGGACGGAGGGAGTATATGATAACGAATAACTTGTGTAGTATACAAGTACGTACAAATTAGAGTTAAAAGGGGAAAAAGAAGGAAGACACCAATTATAGATAGCACACTAGATTCGATTCAACCGAAATTCGGTTCACTCAGTACCGTACCACTCCTTGTGAAATTGGTACTGGACCTTCCCATCCGGAAGAACCGCCCTCACACTCTCCCTTTGCTTGCACCTCTTCTCCCATCGCGTGAGCTTGGGGCACTCCACCTCAAGGTCAAACCCTCCGAGCTGCTCGTAACCGTAAAACATGCTTGAAAATGGGATGAAGACGATGTCTAAGAACCCGAATTCGTCGCCAGAGAAGAAGCCTTTGTTCCCGAGCACCTCCTCTAGGCGTTTGAGTTGCTCGACCAGCTCTTCCTTGGCCGCATCTTTCTCCTCGCCCCTGCTCTCCAGAAACCTTTCCTGGGCGCTGAACACCTTGTGGTCAATGAAGTCAGCCCAGAACCTGGCATCGGCCCTGTCGGCCGGGTCGCCGG | |||||||||
gi|159730448|gb|EG379705.1|EG379705 BG01010A1A07.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTACTCCCTCCGTCCGATAGC EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGTCCAGGGATAATTTTCATATTCTAGATGATCTTGTCCAGGGATAACAATCATACAGGCCTCGGTGCCAACACTCAGCTTGTACACCTAAACTACTCCCTCCGTCCGGAAATACTTGTCGGAGGAATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATTTTTATCCATTTCTCTGACAAGTATTTTCGGACGGAGGGAGTACTACACATGTTGTGTTTGTGCTGTCAGTTTACAGGTTACAGCTAATGCTACAAAACTGGGTGGTTAATGGTACACTAATGCCCCAAGAGAATCCATAGTTGCTGTCAATTCTGATTCCGCATGATGTGCTTTCTTCCTTCAAGCTCTGAGTTCTCTTCGAAAGCACATTCAGGCCATGACTCGGGAAGCACAAGCGAAAATCATAGATCCGAATAAATGTCCAATTCTCAGTTTGTGCTTTAAAGTGAACTTACAGGTCATCATCATCCACCATCAGTTCATCTGGAAGGTGTACTTTCTCCATTGCAGACTGCCAAACATCAGGCAAACATTCTCTCAAAAAAAACATCAGGCAAACATGTAACAGTATTCAAACACAAGTGATTCCAATCAATGATACCAGCGCGGTAATGCGAAGAAATTATTTAACTAGCAATTATTATGGGACCACTCTAGGAAAAGAAAAACATAGGTTGGTTTATGTATAACAAAAAAAATGTAGTGAAGGAAACAAAAAGACAGCAAAAGGGGCGGCTT | |||||||||