| mature miRNA: GTGCAGGTGCAGCGTCATCTC species: Leymus cinereus x Leymus triticoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159625005|gb|EG395722.1|EG395722 BG01036A2B12.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTGCAGGTGCAGCGTCATCTC EST sequence (targeted fragment marked with yellow): GCACCCNNNNCCATCGGAGGAGGAGCTTGAATCCGGCGGCCGGCCGNNNTGAGCAGCAGGAGGAGGAGGCGCCCACAGGATGCCACGGCGAGAAGGGCGTTGCTGTTGATGCGAGATTCCCAATGGCGTCGCGCAGCGCCGCGCTCTGCTTCTCCGCCGCCGTCACCACCACCGCCGCAACCGGCGGCGGCAGGGGCAGGAGCCGGAGGCGCTTCTTGGTCGTCTGCTGCGAGAGCAGCCGGAGATCCGACCTGCTCTCTTCCTCCCTGGCGGCCAAGGTGCTGGGCGCGCCGACGACCTTCGACGCGGCGAAGCTGACGGTGCAGTTCACCGGCGGTGAGGACCGTGGCCCGGCGTTCCCGAGAGCCTACACCCTCAGCCACTGCGACTTCACGGCGAACCTGACGCTGGCGGTGTCGGAGACCACCACGAGCGAGCAGCTCCGACGGTGGGGGTGGCGGCGGGACGACGTCTTCGCCGAGTGGAAGGAGATGACCTGCACCGGCGGTCCAGGAGGAGGGGAGATGACGCTGCACCTGCACTGCCACGTGAGCGGGTCCAACCCGCTGCAGGAGCTGGCGGCCGGGTTCAGGTACTACGTCTTCTCCAAGGAGCTGCCGCTGGTGCTCAAGGCGGTGGTGCACGGCGACGCCGCCCTCTTCGCGGCACGGCCGGAGCTCATGGACGCCCGTGTCTGGGTGCACTTCCACTCCTCATCCAGGAAGTACAACCGCATCGAGTGCTGGG | |||||||||
gi|159770077|gb|EG384964.1|EG384964 BG01018B2H11.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTGCAGGTGCAGCGTCATCTC EST sequence (targeted fragment marked with yellow): GAATGCTNNNCAGGGACCCCAAAAAGAGACTGACCGCCCACGAAGTTCTACGGCATCCATGGGTTCAGGTTGGCGGTCTGGCTCCTGACAAGCCTCTGGACTCTGCTGTTCTATCCCGTATGAAGCAGTTCTCGGCCATGAACAAGCTGAAAAAGATGGCTCTCAGGGTGATTGCGGAGAACCTGTCCGAGGACGAGATCGCCGGCCTCAAGGAGATGTTCAAGATGATCGACTCAGACAACAGCGGGCAGATCACCTACGAGGAGCTCAAGGTGGGGCTCAAGAAGGTCGGCGCCAACCTCCAGGAGTCCGAGATCTACGCGCTCATGCAGGCCGCTGACGTGGACAACAGCGGCACTATCGACTACGGCGAGTTCATCGCGGCGACGCTGCACCTGAACAAGGTGGAGCGGGAGGACCACCTGTTCGCGGCGTTCCAGTACTTCGACAAGGACGGCAGCGGCTACATCACCCCCGACGAGCTGCAGCTCGCCTGCGAGGAGTTCGGCCTCGGCGGCGACGACCTCAGCCTCGACAACATGATCAGAGAAGTCGACCAGGACAACGACGGTCGCATAGACTACAACGAGTTTGTGGCGATGATGCAGAAGCCGGCGCTGGGGCTGGCGAAGAAGGCCGGGGCCGGGTTGGAGAGCATCGGCTTCAGGGAGGCGCTGAGGATGGCTTGAGCCTTGAAGTAAGAGGAGGAGCTAGGTAGTCATGGTGACGCTAACTTCTTTCTGCTCGTCGANNACNGTTGTTGTAGAGACATGGTGCGGTGATTGAGTTTTC | |||||||||
gi|159753129|gb|EG400616.1|EG400616 BG01038A2C08.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTGCAGGTGCAGCGTCATCTC EST sequence (targeted fragment marked with yellow): GGTATATTCGAAGAGGTTCTACACGGGNNTCTCGACTTCCAGTCAGATCCATGGCCCAGCATCTCCGAAGGGGCCAAGGATCTCGTGAGGAGAATGCTCCTGAGGGACCCCAAGAAGAGACTGACCGCACATGAAGTTCTACGGCATCCATGGGTTCAGGTTGGCGGTCTGGCTCCTGACAAGCCTCTGGACTCTGCTGTTCTATCCCGTATGAAGCAGTTCTCGGCCATGAACAAGCTGAAAAAGATGGCTCTCAGGGTGATTGCAGAGAACCTGTCCGAGGACGAGATCGCCGGCCTGAAGGAGATGTTCAAGATGATCGACTCGGACAACAGCGGGCAGATCACGTACGAGGAGCTCAAGGTGGGGCTCAAGAAGGTGGGCGCCAACCTCCAGGAGTCCGAGATCTACGCGCTCATGCAGGCCGCGGACGTGGACAACAGCGGCACGATCGACTACGGCGAGTTCATCGCGGCGACGCTGCACCTGAACAAGGTGGAGCGGGAGGACCACCTGTTCGCGGCGTTCCAGTACTTCGACAAGGACGGCAGCGGCTACATCACCCCCGACGAGCTGCAGCTCGCCTGCGAGGAGTTCGGCCTCGGCGGCGACGACCTCAGCCTCGACAACATGATCAGAGAAGTCGACCAGGACAACGACGGGCGCATTGACTACAACGAGTTCGTGGCGATGATGCAGAAGCCGGCGCTGGGGCTGGCGAA | |||||||||
gi|159746080|gb|EG389647.1|EG389647 BG01028A2G03.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GTGCAGGTGCAGCGTCATCTC EST sequence (targeted fragment marked with yellow): CTCTGCCTCTCTCTGCTTTCTCTCTCTCGTGCAGCTCAGGCAGCAGCCACGTACATCTCTCTCTCACTTCTTGTGCGAAGCACACGGCACCAGCAGCCACCGGAGGAGGAGCTTGAATCCGGCGGCCGGCCGGCCTGAGCAGCAGGAGGAGGAGGCGCCCACAGGATGCCACGGCGAGAAGGGCGTTGCTGTTGATGCGAGATTCCCAATGGCGTCGCGCAGCGCCGCGCTCTGCTTCTCCGCCGCCGTCACCACCACCGCGGCAACCGGCGGCGGCAGGGGCAGGAGCCGGAGGCGCTTCTTGGTCGTCTGCTGCGAGAGCAGCCGGAGATCCGACCTGCTCTCTTCCTCCCTGGCGGCCAAGGTGCTGGGGGCGCCGACGACCTTNNACGCGGCGAAGCTGACGGTGCAGTTCACCGGCGGTGAGGACCGTGGCCCGGCGTTCCCGAGAGCCTACACCCTCAGCCACTGCGACTTCACGGCGAACCTGACGCTGGCGGTGTCGGAGACCATCACGAGCGAGCAGCTCCGACGGTGGGGGTGGCGGCGGGACGACGTCTTCGCCGAGTGGAAGGAGATGACCTGCACCGGCGGTCCAGGAGGAGGGGAGATGACGCTGCACCTGCACTGCCACGTGAGCGGG | |||||||||