| mature miRNA: TAGATACATCCGTATCTAGA species: Leymus cinereus x Leymus triticoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159770670|gb|EG378587.1|EG378587 BG01016A2C05.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TAGATACATCCGTATCTAGA EST sequence (targeted fragment marked with yellow): GTATCCGTCTACGGAGTAGTACCTCCCAAGCTAGCTCGCAGCTCCGCCGCAATGGCCACCGTAGTGAGCAGTCTCCGCGCGCCCTTCTCCGTCAGCCCCGCCGCCCCTTCGGCGCCCATGGCATCCCGCGTCGCGCTCCCGCTGTCGTCGACGGCCGCAAGGGGCATGAGGCTCCGCGCGCAGGCGACGTACAAGGTGAAGCTGATTACGCCGGACGGCGAGGTGGACCTCGAGGTCCCCGACGACGTCTACATCCTCGACCACGCCGAGGAGGAAGGGATCGACCTGCCCTACTCCTGCCGCGCGGGCTCCTGCTCCTCCTGCGCCGGGAAGGTGGTCTCCGGCCAGCTGGACCAGTCCGACCAGAGCTTCCTCGACGACGACCAGATGGAGGCGGGGTGGGTGCTCACCTGCGCCGCGTACCCCACTTCGGACCTCGTCATCGAGACCCACAAGGAGGAGGAGCTCACCGCTTGAATTGACTGATTTTGTGTATTTCGATCCGTTTCCGGCGTGCGCGTGTACATGCACGATGCATGAACTGTGTCAGGATGTTCAGGAGTACTTGCTGTGGTGGGATTTTGATTGCTTATATAATGCCTAGTGTTAATTTTTTTTCAAGTCAAGTACAACCTCCATCTCAAATTAGTCCACTTAGAATCGTCTAGATACGGATGTATCTAGACACGCTGAGTCAACTAATTCGGGACGCGTGCCTCGCGATTTACTTTTATGATTTACGCAATCTGATATGTGCTTAAATTGGCCTTGCAAANNAAAAAAAAAAAAATC | |||||||||
gi|159737045|gb|EG395520.1|EG395520 BG01034A2F03.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TAGATACATCCGTATCTAGA EST sequence (targeted fragment marked with yellow): ACGTGCTATGTCCTTTGGCTTCCTAACACAGTATGTACATTTACTTTACAACATAAGGGTTAAACTTTTGGATTATGATCTGAGGCAGCAGTGATCTTCCTCATACCGGAAAAACGACCATCTCAATCTTTTCACTCAAAACAGAACCCTGGAGTGGAGGAAATACTTCTGGAGCCGGATGTATCTTTTCCTGTGTCTTACATTTGAAGGTTTTATATAAGAAGTATCCGCTGACCTTAATGTGTATGTAATGCTATCTTTTGTAAATCACATGGCGGTGTAGATGATGAAATATCATACGATGCGCGGAACCGTAGGCCATTGCCTGTATTGGCTGATACTGGGCAGAGCCAGCAGAATATGCTACGTCCCAGCACCGAAATAAGATTCTCATAGACACCAAGGTCATATGGATGATGATAAAGGTCTCCACCCTTTTCTGCCAACCACATTGCTCTAACTCCTTCATGGTACTCAATTGTAGTTTTATTCTGTAATATGAGGTGGATATGCCAGCCCAAGAGCACTGACAGCGCCAGAGTTAATGGACAAAGAATGACCCCACAAATAATAATCAATGTTCTAGAAGAATCACTGCCTAACTGTTCATCTTTCGGAGCACTGTGAATGACGCTCCCTATAATCAGAATCATTGAATNNNAGCTTGCAATTACAGCATACAATACAAAG | |||||||||
gi|159737131|gb|EG403294.1|EG403294 BG01042A2D11.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TAGATACATCCGTATCTAGA EST sequence (targeted fragment marked with yellow): AAAGGAAGAGCCTAGAAGCTGTTGTCTGGTCTCCAACAATGATATGTTTGTTCGCAGGATATGCTGTTGCATTATTAATGTTCTACACAATTACTCCTTTTGTCCTTAAGGTTAAGTTCCCTCCAACATGTTAAGCAGAAAATAAGCTACACAAGTATGAAACAAAGAAAATTGGGTTGATCAAGAAGTTATGAAGTACTTCTTCCATTCACTATTATAAGATGTTCTAACTTTTTTCCGATACGGATGTATATAGATGCATTTTAGTGTGTTTGTTCACTCGTTTCAGTCCGTATGTAGTCCATTCTAAAATATCCAAAACGTCTTATATTTGTGAACGGAGGTAGTATATTTGAATAAACTAAGTATAAAAATAAGCTATTTGGGTATATTAGTTCATTAGGATCTATATAAGCCAGAAGGCCATTCTTTTCTTTTTCTACAGTCCAATAGTAGTTTAGCCCATCCTGATTGCCATAAGCTCTTGCAGATGAGTGGATCAACATTGTTTAATCTCTCACTCTTAACATCTGACATGTGGGCAGTCGCCATTCGACTATTGTTCTATCAACAACAGATAAACTGGCTGTACTATGTAGCATTCACGGTTGTGGCCATTGGATTAATCGTCTACTCACTTAAGTAAGTTTGTTGGA | |||||||||
gi|159619719|gb|EG385359.1|EG385359 BG01025A1F07.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TAGATACATCCGTATCTAGA EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTCTTACAGACCGTTCCAATAAATATATACACACAGATAGACAATCCAAGCCACGCAGGAGTTAAATCTCTTCTGTTATTTTCTTTGCTTACTTAAAACACCAAACAAGAAGCGCCTCAAAAGGACTGACACCCTTCCAAGATGAAAGAGACACAGGTAAGAAAGCATTGGCATATACTCCCTCCGTTTCTAAATATAAGCCCTTTTTTAGAGATTTCAATACGAACTACATACGGATGTATATAGACGTATTTTAGAGTGTAGATTCACTTATTTTGCTCTGTATGTAGTCCATATTGGAATCTCTAAAAAGGCTTATATTTGGGAATGGAGGGAGTATATCCTACTAGGTGAAAGGCACAAGCTCACAGGGTACTCAGAAAGGCCGGTTCTTCATTTTGGAGATCAGACAGGGTTGTTCGTTGTTCAGATCAGACCCAGTGCGGCGTCAGAAAGCAGTGTGCGGTTTGCTAGTGAATTCCACTGGTTGTGCCGTGGCCACTGCTGACAGAGCCCCAGTTAGTTTCTCCACCTCCCATCTGCACGGCGATGCTGTCCATCGACTCCGAGGTCCCACTTCTATGACCCCAGCTTGATCGTCTCGAATGCATACCAGCCCTACCTTCCATGAGCTCAACTGGAAGGGCTTCTCTGCTTNNNTCTGGTGACGCATGGGTTATTCTGCCCTCTTTCTCATCCAACATGCCCC | |||||||||
gi|159749253|gb|EG379745.1|EG379745 BG01008A2C05.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TAGATACATCCGTATCTAGA EST sequence (targeted fragment marked with yellow): CGATTTTTTTTTTTTTTTTTTAGAGCTTCCCGAGCTAGTATATATATTGACAACCCGCACTATTTACATTCTGTACTGATCCGAGTCCTGCCGACCTCCTTGTGTAAATAAATGTTAAATGTCAACTGAACCATAGGATTCGGGGTCAGTGCACCAAAAAGTTCGGAGGTGTGCACTGCACTGTACAGGACTTGAATTTGACAGCACACCTGTTTGCTAACTTCCCTTTGTACAGTCATAGTAAACTTTTTCAGCGGAATGCTGTTAATCAGTCGGTATGTTCAGACAGTATCCTCAGCGTGCATCTGATCTACCTGGCGACATCTCCAGGCTCCAGATTAGACTCTTCTAAAACCTTAATAACACTATATTGGTGAACGGTGACCAATCTCCCCCCAAGGGCAACAACATTCTCTTTGTTTTCTACTCCCTCCGTTTCTAAATATAGGTCCTTTTAGAGATTTCAATACGAACTACATACGGATGTATATAGACATATTTTAAAGTGTAGATTCACTCATTTTGCTCCGTATGTAGTTCATATTGGAATCTCTAAAAAGACTTATATTTAGGAACGGAGGGAGTATTAGCCAAAACAGTGTTCAAACTTCGCGGTTTCCAACATCAGGTATTGATTCCTGAATCGCTTGAGTAAACATAGCAATCTTGTAGGTAAAAAACCCAACGAGCATGGGTATCAACTCCAGGTGCATGAAGCCGTAATCTGGAACTAGTATCGCATTCCATCGATTGTACATCAT | |||||||||
gi|159606955|gb|EG380592.1|EG380592 BG01007B2B04.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TAGATACATCCGTATCTAGA EST sequence (targeted fragment marked with yellow): AAAGACATTGAAGAACTCGCCACGCACCGAGCAAAATCCACTAGGTTCTGACTTCTGACTGAGCAGAGCCGCATGGAGACGAGCCTGCTGAGAAGCCGTACCATCGCTCCACTCCCATCGACGCCCCGGCTGGTCTCCTCCCAGCGCCGCCGCTGCCGGCTTCCCTCCAGAACGTTCTTCCCGCCGCAGCCTCCCCCGCCAAGCCAATTCGACAGGGAGTGCAGCAGGGCAATGCGGCAGCGGCAGGAGTGGGTGGGGGACTGGGTCCGGAGCAACGACACGCTCGTCCGTGCCCTCCCCATCCTCGTTGGCGGCGCGTCACTCCTCGCCGTCCTCCTCAACCGTGCCGTTTCCGGCATCGCCGCCGTCTCCGACGCCTCCAGTTCGCAGTCGAGGGCTGACATACTCACTTTGGCGCTCTCTGTAACTGACATCCTTGCCGGCCTTGTTTGGCTGTCAATCCGCCCGAAAACCATTTCTCCGGTCGTTCCTCGAGGTGTCGATTGTAAGCGAGTAGATGCGGATGTATCAAGTTCGGCTCTTCGTGAACTACTTTGGACATGGGATTCCCTGACGGCTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTATGGA | |||||||||
gi|159732968|gb|EG377405.1|EG377405 BG01007A2A12.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TAGATACATCCGTATCTAGA EST sequence (targeted fragment marked with yellow): CGCACCTTGCCAATTTGGCATCAAGTTTTGGCCNNNACACGTCACCTGTACTTTTGCATTACAACACGCATACTCCGGTAGGTACTCAAGTACTCCTCCGTACTATAGTTTGTTTGAGGGGATGGCAGTTTCTGTTAGAGAAGGCAATTTTCGTTTTTAAACTGCCATCGTTTGACCTCGTCTCAAAACTAAAACTGTCATCAAAAAGGGTTTGCTTGCCACCCCTTTCCCAGCGATCGGTCGCCAGTTAACTTTTCTGATCTTAATTACTGCTCTCTCCGTTTCTAAATATAAGTCATTTTAGAGATTTCAATACGAACTACATACGGATGTATATAGACGTATTTTAGAGTGTAGATTCACTCATTTTGCTTCGTATGTAGGCCATATTGGAATCTCTAAAAAGACTTATATATTTAGGAACGGAGGGAGTAGTAGAAGCACCGCTAGTCCTGTTCTGCATACTACTAAAATTTGTTAGCTTTGTGGTCACAGGGGATACTACAAGTGTAGCAGCATGAAGGGCTGCATGGCCCGGAAACTGGTGGAGCGCAGCCCGGCCAAACCCGGTGTGCTCGTCATCACGTACATGGCCGAGCACTGCCACCCGGTGCCGACGCAGATCAACGCGCTCGCCGGCACCACCCGCCACAAGTCCACCCCTGCCGAGGACCACGCGACGACGACCACGACGTCGCCCAAGAGCCACGAGGCGGTGAGGTGCGAGGACGAAAGCAACGAGACGTCGTCGATGGCCAC | |||||||||
gi|159733889|gb|EG401273.1|EG401273 BG01041A2F05.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TAGATACATCCGTATCTAGA EST sequence (targeted fragment marked with yellow): TTGAGAGTCACGCAGCCACGCAGGCCACGCCCCCCGCGCGCCTAATCCGTACGGGCGCCCGAGGGGGGTCCGGCAGCCGGCCGGCCATGACGAGCGCCTCCGAGCTCTTCGCCGCCCGCCGCGCCCGCGCGCCCCGCCTCTCCGACCCGGACCCCGACCCGGACCCGCTCTCCGACGCGCCCCTCGACCCGCACGGCCTCGCCGCCCGCCGTCGCCGACGGGGCTGCCGCGCGCGCCGCCAGCTCGACGCCGCCGGGGACGTGCGGCAGCACCTCCACACCGGCCCACCGCCCCCGCGCCGACGCGGCTCCTACACGGACCGTATCTTATCATACATAGACAATAGCAGCATTGGGGATTCTGCAGCTACAAGGAACCGACTTGACAGGCTTATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTGCTGCAAGCTCAGGCCCGTGTTCTCGAGAGGCTGAGAGGCGTTTCTATCAGTTCATCTACCTCCAGACCATCCATCACATTGGATGAATTTTCAGCTACGGATGTGTTTAGAATCATCGACTTCGGAAGCAGAGAAGCCCCATACGAGGCAAATTGGCCTAGCTCATCATCTGTCCAGCCAAGCAGCGGGTCGGATGAAGAGAACTTGGAGAACACATCCATCAGTTCAACTACTTCCAACAGGTCACCTGGACTGAGCAAGTCTGCCTTTT | |||||||||
gi|159684867|gb|EG392084.1|EG392084 BG01016A1F02.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TAGATACATCCGTATCTAGA EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGACAGTAAAGGAATTTTTTCTATAGAAATCCTATCCTACAAAATTACTACAAAATTCCTCCAAACCAAAGGAGGCCTTAGCAGTTGCCATATACTCCCTCCGTTCCAAAAAGCTTGTCTTAGATTTATCTAGATACGGATGTATCTAGTTGGGACGGAGGTAATATATGGTATCAGAATAACTTCACCAAATATCATGCCCATATTTCCAAAGATCTACACCTCTTACAAGACACTGAAGACTTTTTTCCTGTTGAAAGCACCATCAGATC | |||||||||
gi|159781042|gb|EG382668.1|EG382668 BG01015A1A05.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TAGATACATCCGTATCTAGA EST sequence (targeted fragment marked with yellow): GCATTTTTNNNTTTTTTTTTTAGCTGGCGCAACACTGAAATTTAACGAACTCCGAACTATCAATTTCATTCATCCCTTATATTATTCCACAAGCGGCCATTCAATCACAACGACTAATACATATGTACATGTTCATGGCTGCTTACAACAGCATCTGCGCTTGCTTTGCCTTTACCAGTCTCCGCCGGCCTATCAGCCTTGTCATGGCTGCTAAGCTGTTGCAGGCGCCGCCTCTGATTTCCCCCCAGCCACCCTAAGATGTCTGCCCTTTGTTTGTTGGGCTTCAAATAGGGCCCAAATCGTCGGTACTTCGGTCTTGGTTGCCTTTTAAGCTGTTATCTACTCCCTCCGTTTCTAAATATAAGTCCTTTTAGAGATTTCACAATACGGACTACATATGGATGTATATAGACGTATTTTAAAGTGTTGAATCAGTCATTTTGCTCCGTATGTGGTTCATATTGGAATCTCTAAAAAGACTTATATTTAGGAACGGAGGGAGTAGCAACTATCTACACTGCACAATGTCCGAATCCACAATGCAATTAGCTCAGATCGAAACCGGCTTCCGAGTTTATTGCATACAACAGTTTGGTTTGCAACTGCTCCTTCGTTCTGTAAGGAGGGAGCTTCAGAAGGTTCATGCAAGTAGCCGAGGTGGGCAAACGGTCTCCATGCTCCTCCAAGCCGGGGACACCAGCTCTTTGAATGCAGAATTTAGGATCAAGGTACTCAAATCCAAGGAGTGGCCCGCGAGAACATCCAGTCACAAACTTGNNNAACTTTTTCTGATTATCTGAACTGAAGCTCTTTAAACCTCCCACAACATATCGATAATCTCATG | |||||||||