| mature miRNA: TATTATGGAACGGAGGGAGTA species: Leymus cinereus x Leymus triticoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159620143|gb|EG397209.1|EG397209 BG01031A1E09.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTATGGAACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): AGGATGAATGTGCATTGCTCTCTAGACGGCNNNNTTCTGAATACCCTGTTCGAAATATGTTCAAACTCTTTATATGTGCTATTTGTCAAGTAGAGTTAAAGCCAAATCAAGGGATATCTGTACATGAAGATTCATCACAACCTGGGAACTTGCGTCGATGGGATGGTCCGTTCCTTTGCCAGAGCTGTCAGGAAAAAAAAGAAGCCATGGAGGGAAAGCGCCGTTCACGAGGTATTGTTTGCAGAGCTGTTTATATACTACTTGTTACTCCCTCTGTTCCACAATGTAGTGCATATTTGATTTTTAATAAGTCAAACAAGTCTACGTTTGAGCAAGATTGTAGGGAAAATATCAACATCTAAAATCCAAAACTAGTATCATTAGATTCATCATGAAGTCTATTTTCATATTTTAAATATTTACTCCCTCTGTCTCATAATATAAGACGTTTTTAGTAGTATTTTAGATGCTGATAGTTTATTCTATAAACTTGGTCAAACGTAGACATGTTTGACTTTCTAAAAACCAAATATGCACCACATTGTGAAATGGAGGGAGTATGAAGTACCGAAACCTTTTCCTTATATATTGTTAACTTGCTCCAGATTCGTCATCGAGAAATAGCAGGTTCAGTGAATAGTTGCC | |||||||||
gi|159767643|gb|EG391547.1|EG391547 BG01030A2F09.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTATGGAACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): GCATTTTTTNNNTTTTTTTTTGTTTTTTTTTTTTCGAGAAATCTACTCCCTCCGTCCCATAATATAAGACCTTATTACATCCAATATACACATCTAGGATCCGGCAGCAGCACGGTGCAAACTGAAGACCTGGTAAAGCTGTACATCATCATTCCCATAAAAGCCTATCGTTGCCTCTCTCTGCTGCTGGAACTTTGAAATCCTGCGCACACATCTTAATCTTCTGGTAGTACCAAAAAACATTCAGAAGGGCGGCAACAGGAGCAGCAGAGGAACGCCGCAGCTCGGCGACCACCGGTAAGCAGCTGTACAACGGAGCGGCAGATATGCCCATGTTCAGCTGAGCACGTCGACCGGCCAGAATCTCCGCCACGTGGAGATCTCGTCTTTGGTCTGCAGCTTCCTGATGCCGCCGTAGAAGCCGTCCGTCTCGTCCCCTTTCTCCCGGTGGTCTTTCCTGGTCACCGTGGTTTGCCTCCACCTCGACCCAGCCGCGTAGTGCTTGAACTCCAGCATGATCGTATCGTCTTCATGGCACCGGCAGAGATGCTCGTTCGCATTGCACGGCTCCAGGTGACCCACGACGCCGTACCACCAGCCGTAGGGGAAATCCTTGTTCTTCCGCCACTGGATCTCCAAGTGGTCGCCCGGGCGCAGGTCCTCCAAGCAGGCCGAGGCGTGGAGGTCCTGCGCCGGCGTGCTCAGCGGCGCCGCGCGGACCCTGCACCACTGCACGCCGTCCTCCTCCTTGGCTGGCTTCCGGCCGTGGGGCGGGTA | |||||||||
gi|159679111|gb|EG398359.1|EG398359 BG01038B1C09.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTATGGAACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): TTTTTTTTTGAAACTTAAGATCCATTTATTTTATTTTATTTCGTATACAGAACTGAAATATGTAAATATCTTAGACACTTGTATTGGGCCACACACAAACCAGCAACCATTAGCAGATCAACTGATTCCCCGTTTGAATGTGTTGGGCTTCAGGAAGCCAATGTAGTCCTTGGGCAGTTGTCGATGGAGCAAGCCAGGACATCTCGGTAATCCCGCGAGATTGTGAAATGATCATACACATTGCCGTCGCGGCTTTTCTTGTACTCGAACAGCAAGGATGAATGGTTGAAGGCCGTGAGCTTGACGAACCCAAAGTCGAAGTCCCTGAAGTGACTCCACTGGATATTTGATGTGGTGAATGCTGAATCTGCAATGCTAGCGCCAGCACCACCGACAACCACATGTGTTGTTGCCTTGAACGGGCCACTGTAATGATCCGATGCATCAACGACACATTGGCTCTGATAGACTGGACATGTCCTTTCATAGTTATGGACATGACCGTAGAAGGCGAGATCGACCTTGTACTTCTGCCAGAGCTCCTGCAGCGCTTCTCGTCCCAACGGTTCCTCGAATGTGCCCTCTGTTTCATAGTAAGTGCAGGATGAGTACCCAAGAACACGGTGCGCCAGGAAGATGAGCCAGGGCTGCTTCTGCCTGTCGACGGACGCCAGGCATTGCTCAATGAACTTGTACTGCTCGGTCCCTGGCCTCCAATCTTCTTCTGTGT | |||||||||
gi|159747538|gb|EG381430.1|EG381430 BG01012A2E12.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTATGGAACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): GCATTTTTNNNTTTTTTTTTGTTTCAAAAATTTAAATCCAAAATTTGGATTAGCATTTTGAATGTTCCAAATCTAGAACTGAAACTTAAGATCCATTTATTTTATTTTATTTCGTATACAGAACTGAAATATGTAAATATCTTAGACACTTGTATTGGGCCACACACAAACCAGCAACCATTAGCAGATCAACTGATTCCCCGTTTGAATGTGTTGGGGCTTCAGGAAGCCAATGTAGTCCTTGGGCAGTTGTCAATGGAGCAAGCCAGGACATCTCGGTAATCCCGCGAGATTGTGAAATGATCATACACATTGCCGTCGCGGCTTTTCTTGTACTCGAACAGCAAGGATGAATGGTTGAAGGCCGTGAGCTTGACGAACCCAAAGTCGAAGTCCCTGAAGTGACTCCACTGGATATTTGATGTGGTGAATGCTGAATCTGCAATGCTAGCGCCAGCACCACCGACAACCACATGTGTTGTTGCCTTGAACGGGCCACTGTAATGATCCGATGCATCAACGACACATTGGCTCTGATAGACTGGACATGTCCTTTCATAGTTATGGACATGACCGTAGAAGGCGAGATCGACCTTGTACTTCTGCCAGAGCTCCTGCAGCGCTTCTCGTCCCATCGGTTCCTCGAATGTGCCCTCTGTTTCATAGTAAGTGCAGGATGAGTACCCAAGAACACGGTGCGCCGGGAAGATGAGCCAGGGCTGCTTCTGCCTGTCGACGGACGCCAGGCATTGCTCAATGAACTTGTGCTGCTCGGTCCCTGGCCTCCAATCTTCTTCTGTGTTAGCAATGCAGAACCTGAACATGCCATAATCTGTCGCATA | |||||||||
gi|159769543|gb|EG398615.1|EG398615 BG01038B2G04.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTATGGAACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): GCATTTTTNNTTTTTTTTTTTGCGCAGAAATAACAAAGATGGCCAAAAACGCATGACCCAACAAACCAACCAGGTGAGGTAATTCTGACGTTTTACATGTTACTACTCCCTCCGTCCCATAATATAAGAACGTTTTTGCAAGCTTGTAGTTCCTAAAGATCTCTACTAGCTAGATTACATCTGACATGAACTACATCAGCTTGGTTTTTACCATTCTTCTATCTCATCTTCATCTTCTTCAGAGTCATTCCCTTCAGCATCAAGCATATCAATCGAGTTCGGACCACCTGCGACATGGTGGTGCGAGGGGTTATTTCGGGCCATATCACCGTGGGGGCTTATCCATCTCTCAAAAGGCCTGAAGTCAGTGACCACGTCGGAGAAGTTGCGAGAACCAGACGTGCTAGACGGATCAAATCTTTCTTTAAGAATCAGACCCTTCGTAGATCGAAAAGTACGCTCAATTTGCCAGACCTTCGGGCTGCGTATTGTATGCCATCTTGAGGGTGAGGCATGTGCATTTCCAAAAAGAACTCCTCGTGCTGCAACAGAGGCAGCAATAAGTTGTGACATATTTTCCGACTCGTTTGATTCGTTTACAATCCAACGAACCGATGTGATTGGACTGCCAGCAAGAAGGCAGTCTGCCTCACTCAAATATGACATCACAACCCATGCATCATCAACAGCATCATCATCGATGAAATCANCNACATTTTCATGTAGAAAGTCAGCAACAGTCCGTACTTTTCCGTGTGC | |||||||||
gi|159748630|gb|EG391246.1|EG391246 BG01028B2B06.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTATGGAACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGGCAATAACAATTTTATCTTAGCAGTTGCAGCTTGTACAAGTAATCACAGGACAGGGCATCTGGCGCTAAAATAATTACCCGGCATAGTCGTCCCATTCAAATAACTGGAGATGAGATCCTACAAGGAAAATATTTGAGCGACAAGGTTTCAATCGGAGCCATAGTTCGTACTCCCTCCGTTCCATAATATAAGAACGTTTTTCAAGCTAACAAGCTTACAAAAATGCTCTTATATTATGGGACGGAGGGAGTACTTGGTTGTTGGCCATGTCAACTGCAAGAACCCATGCCTTTGGGTGCAGGAATTTGACCGTGATGATCAGGTAAACAACAGTTCCGCTCTGCAGCCTCACCGTTCAGGTTGAGAACAGGCTGACATGTCCAGAGATTCTGCAAGTTCCGCTCTGCAGCCTCACCGTTCTTCTGAGCCTCACGCAGCATTCCACAACGAAGCAGTCCAGACCGCATTGTTCTGTCAATTCTGGTGTCAGAAGCGTTGACAGTTCAGTCGATCTTCCAATCCTCCAGAGCATCAGTAACATTCCAGCTGGTGTATGTGCTGAGTACCCAGTTATCGATTCTCAACCTGGGGCCCCTGGTTTAAGGGTCTTTA | |||||||||
gi|159759898|gb|EG376509.1|EG376509 BG01011B2E04.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTATGGAACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): GCACCTACCGTCAGTACATCTCTGCCATGTGTNNTATTACAAAAAAGTTAAAATTATTTGTTAATCTTTCTGTTCAGGAACTTTGGCTTTCAAGTCAACTCTGGCTACTCGAATGTATATAAATCCGACTATTCCTGAAACGGCAGCCATTTTGGAAAGGTATGAATAACAAAAATGAACCATCTGTGTAGCTAATTCCTAATGATTTAATATCTGTTTTGACAATTGTCGCAATAATTCAAATCTACCGTAAGGTCCTACCAAATTGAAATACGCACAGAACCGCCCCCAGGCAACAGAAACAACAATTATCGCATTATCAGCTGTTGATCCAAATGAAGTGATGGTATTTTCTTGTTGCTGTCAAAATTGTATCAGTCCTATGTCTTAATTGATAATACTTGCTTTTTGTCTAAATTGCATTGTTCCTATCTACTCCCTCCGTCCCATAATATAAGATGCTATTACATCCAATATACTCACATATTGGATGTAACTTGTAGGACAATACTATAAGTTGAGGATAAAATTAGCTGAAGTGGTATGAACAGATGATAACTGGTGGTGCATGGGATGCAAATAGTGCTTGCAGAAACTAAAAAAAGGACCAAGGCATGTACACAAGCCCTATATGCACTCAACCAAAAGCTTTTCCAAGGTACAAAATGTTGAAAGAGAATCCCACATTTGCAGAATTAATCTTTTCAGACAACAAGGCAGCATCATTGTTGCAAAAGAGGCCAATTACTTGCTTGAGGAAACAGAGCACGAAATGAAGACACACCAGGAGAAATATCAGATCTTGTGGNNANNGATTTTATCGTTACAGATATACTGGATGACAATACTCTGAACAGCGACCACTACCACTTC | |||||||||
gi|159672238|gb|EG377814.1|EG377814 BG01006A1A08.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTATGGAACGGAGGGAGTA EST sequence (targeted fragment marked with yellow): CGATTTTTTTCTTTTTTTTTTAGATACCAAATCACTTTATTTATCTCAGGGCATGTGTTGCAAGTGTACACCAACTTAGCCACTTAATGGGCATGTAATATGTACTCCCTCCGTCCCATAATATAAGACTCGGAGGGAGTAGTATACATGTACCTAAAGTAAATTATGCGACCAATTTATTGTGTAGTGCATGGTCGCCCTTCCCCCGCGCGCGCGAAGACTCAGACGCTATCCTTCACCTGGCTGCTGTAACTGTTCTGCACGTCGTTGTAGCGGTCCCACACCATGATCCCACCGTAGTTGCTGGCGCCCTTCACGCCGGGGAGCACCGCCGACGTCAGGTCGCCAGGCGGCACGTACCCGCTCCCGGCCGCGGCCGTCGAGGCCGGCACGCCGAGGTAGAAGCCCCCGGACACCTTCACGCTGCTCGTCCACGTGTTCCACGCGCTCTGCAGGTTGCTTGCGTCCCCGCTCGCGTACTGGCACGGCGGGTTGTTGTAGAACTGCACCCACACGTTGTCGAACAGCCCCGTCTGCAGCGCCGGCCCCAGCGACGCGTCCGGGTACGGGCACTGCGGCGCCGCCGTCAGGTACACCTTCCTGCCCTGCGTGCTGTACTGGGACAGGAACGTGGCCAGTTCGTC | |||||||||