| mature miRNA: TTTTGAGACAGAGGGAGTAGC species: Leymus cinereus x Leymus triticoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159683703|gb|EG383969.1|EG383969 BG01019B2D06.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TTTTGAGACAGAGGGAGTAGC EST sequence (targeted fragment marked with yellow): ACCAGATATCAAACAAGGCTTCCGGGTTTGCTAGATTCTACTACTACCCTCCATGTCCGAGACCTGACCTAGTTTTGGGCCTCAGGCCTCACTCTGATGGTAATCTCCTTACCATCCTTTTTGTCGACGACGATGTTGGTGGCTTGCAAGTTCAGAGAGATGGGAAATGGTACAATGTTCCAGCCAAGCCTCACACACTGGTGATCAACTTAGCAGACTGCATGGAGATAATGAACAACGGAATCTTTAGGAGCCCGGTTCACAGAGTGGTGACGAACACCGAGAAGGAGAGGCTTTCGCTGGCCGTGTTCTATGCCGTGGATGAAGAAACAGTGCTGGAGCCAGCACCTGGTTTGCTGGATGACAAGCGACCACCAAGATATAGGAAAATGATGGCCAAGGATTTCGTAGCTGGGCTCTTTGAACATTTCCTTCAGGGGAAGAGATTCATCGACACCCTGAAGATATAAGCTATACGTGTTAGCTTTTTTTCTTGACAGTAAGTTATACTGGGCGCGGATTCTCTACCTTGCTGTGGCAAAGGCACCGGTGACTTTGCCACATGATCACGAATGGAAGGCTGAGATCCCTGCAAGGACTGTTCCGAGTACTGTTCACACACAATCACTGTTATACTCCCTCTGTCTCAAAAAGCTTGTCGCTCATATGGATGTATCTAGCACTAACCGTCCCAAAAAGCTTGTCGCTANNATGGATGTATCTAGATGGGATGGAGGGAGTACGTGTTAGTTTATGGAGTTGTAGCAGTGATTACCTACGT | |||||||||
gi|159620143|gb|EG397209.1|EG397209 BG01031A1E09.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TTTTGAGACAGAGGGAGTAGC EST sequence (targeted fragment marked with yellow): AGGATGAATGTGCATTGCTCTCTAGACGGCNNNNTTCTGAATACCCTGTTCGAAATATGTTCAAACTCTTTATATGTGCTATTTGTCAAGTAGAGTTAAAGCCAAATCAAGGGATATCTGTACATGAAGATTCATCACAACCTGGGAACTTGCGTCGATGGGATGGTCCGTTCCTTTGCCAGAGCTGTCAGGAAAAAAAAGAAGCCATGGAGGGAAAGCGCCGTTCACGAGGTATTGTTTGCAGAGCTGTTTATATACTACTTGTTACTCCCTCTGTTCCACAATGTAGTGCATATTTGATTTTTAATAAGTCAAACAAGTCTACGTTTGAGCAAGATTGTAGGGAAAATATCAACATCTAAAATCCAAAACTAGTATCATTAGATTCATCATGAAGTCTATTTTCATATTTTAAATATTTACTCCCTCTGTCTCATAATATAAGACGTTTTTAGTAGTATTTTAGATGCTGATAGTTTATTCTATAAACTTGGTCAAACGTAGACATGTTTGACTTTCTAAAAACCAAATATGCACCACATTGTGAAATGGAGGGAGTATGAAGTACCGAAACCTTTTCCTTATATATTGTTAACTTGCTCCAGATTCGTCATCGAGAAATAGCAGGTTCAGTGAATAGTTGCC | |||||||||
gi|159773976|gb|EG382111.1|EG382111 BG01010A2F10.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TTTTGAGACAGAGGGAGTAGC EST sequence (targeted fragment marked with yellow): CGATTTTTTTCTTTTTTTTTTGCCGTCTTTCTAAAAGTAGAAAACTCAAAGTGTCTGGGCACAAAGTTACCGACTACGAGGAAACATATATATTGTCGCCACACCTAACATTCATTCTAACAACATACTCCCTCTGTCTCATAATATACTCACATATTGAATGTAATAACATCTTATATTATGGTACGGAGGGAGTACATGAAACTATCAATGCAAACCAAAGCTACACAGGCTATACAAAGTAACACGATTAAACTAAACTATCTAAGAACCTTCCAAAATCCTAGCTTCCAAAACCCTTTTCTGGTATAGTAGTAATGTCTTCAAAAAACACTACCTGAAGAAAGCTATAACTATCATCAATCTAACTGTTCGATTGTGCTCCTTCCAAGTTTCCAATTTACTTCTGGACTGCGCCGTCTGCACGTGATGATACAACAGTACTCTAACAGAAGACTGGAAGTAATCGTTGGCCTTCAGGTGCTCCCGTCACCATTTCTTCCACTCCATTTTGCAGCCAAGTAACTCACAAACGCCTATGGAGAAAATATCCTGACAGCTTGTACTATAACACTGTTCTTTCATGCAAAATGTATCGTTTTTGTATTGCGTATGACTGCAACATTAGAAGGCCATTTCTTGAAGAATTTTCAATGTTGTTTGATGTACCCATTCTAGATGTTGTGCTGTAATGCCAGATGTGTTCTTTGCATATATGCCGCCTAAGACCTTAGAAACTGTCTCAAGGAACATTCCAGGCCGGACAGGCTGTGGCTTGCGGCCCGTTGCATTTTCCCTT | |||||||||
gi|159699248|gb|EG378341.1|EG378341 BG01009A1A11.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TTTTGAGACAGAGGGAGTAGC EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGAAAAATTCATCATCATACTACACTCATCTTACGAGATACACATATACTCAAGTCTCAGTTCACCTCAACGCCGGTTTGATCCGCTTAGACGAACAGATCTCAGATCGGTTCTGCCATGTTCTCGGCGGAAAAACTATTTACAAGGCTGCTCGGTCTGTCTCAAGACAACTAAACAAAAATACAAGAGGACCAAAACAGAAGAAGAAAAAAACGTTCCCTGCAGGAAAAATGAGAAACTAGTCATCATCTAAAATTTGTCCTTTGTCTAGTCCTCCGAAGGCGGCGGCCGGTTCAGATCCAGATCAAACGCGACCGCCTTATGCGCTGTCACCGCGGGGGGCGACGGGGACAGATCAACGACCGACGAGGAGTCGGAGTCGCTCTGGGCAACGGCTGCCACGGTGACCGGCTGCGCCATCTTCAGCGTGCGATACCCCGACGCCGCCGCCGCCGCCGCGGCCTGTTCATAGAAGAAGTACGGGTGCAGAGGCTGGCGCGGCGCCACCGGGTAACCGTTGAATGGGAAGCGCATGCCGCCGGCGGCGACCGCCGTCACGGCAGCCGCGCGGTGAAAGAGGTCCAGGTCGAGGGCGGGCGGCAGCGGCATGGCCTGCATAGGCGCCTGGACGCAGCCGCCGCTCCCTCCGCCGCTCGAGTCCACGGTGCTGTTGCTGCTCGGGCTGCCGCCGCCGGCGACAGGGGACGACGACGAAGGGAACGGGAAGTTTGTTTTCGCCTTGGCGCCGCGGAACTCGCGCGCGGCGGTGT | |||||||||
gi|159692553|gb|EG393089.1|EG393089 BG01041B2D01.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TTTTGAGACAGAGGGAGTAGC EST sequence (targeted fragment marked with yellow): GATNNNTTCGGTGTCCACCTCGCTTGCTCCTTTTCCAAGGCCAACCAGATTTAGGCTCGAACCACAATGAACTCCGGCACGACGGTGATGACGGGCCACCACGACCACGGCGACGAGCTACACGCCTACACCATGATAATATACTGCAACCTTGGGAACCCTCAGGTTCTCGGTCAGCGACCGACAACATTCTTTTGAGAGCTTGGAATTCTTAATTATTTTCTACAAATTTTAACTGAGAAATATGAATACGACATTGATGTTTTATGTCTGAAATGTCTGCTACCTGTTTCTTTCTCTGTGTCAAAATCTAGCTCCACCCCTGCACAAAGATCTCAGCCTACTATTACAGTCCATATATCATAAATAGCGCGCGGAGGATTATTGAGTCAATGTCCAGTATGAATTCCAATCCATATACTAACTCTCAGGTATTATAGTGGAGCATACTGATCCTGCAAAGTGGTTCCTGCAGAGTGGTAATTTCTGAATGTTGGTGCACTACCGCTGTAATATGGTCACCGTCTAGGTTCTCTCTTTTGCACCTCCCGCTCGCTTGGACCCGGGCGATGCATTGCCTGCCTGCTTTCTTGACATTCTTTCTCCGGATGCCTAATTCTTATTTTCTGATGTGTTGTGTGCAGGTTTGTGGCGGGGAGAGTGGTCTTTGGGTTCTGCGAGAACGGCATGTCCAGTTTCAGGTTCAGCCGCCCCATGAGGANNNCATCAATGTCTGGGTCGGGATGCCGCACG | |||||||||
gi|159736584|gb|EG403283.1|EG403283 BG01042A2D01.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TTTTGAGACAGAGGGAGTAGC EST sequence (targeted fragment marked with yellow): CATTNNNTTTTTTTTTTTTTATACTAGCAAGCCTATACTGTACTATNNNCATACATACATACATACATGCTCATGCCACCTGTCCATCCCCAAACCCAATTTGTTGCTGCTGCTGTTTCTCTCTCAAAAGGGAAACAAAAGGAGATGTGTATGATGGCGGCGGCACGGCAGGTTGAAGCTGAAGCTGGAACATATAAGTTGGATTCCGTCTAGCTAGGCGGCGGGGGCGAGGATGGACATGAAGACGGTGGACCAGGCGGTGAGGGCGAGGGCTGCAACGAGGTAAGTCCAGAGGAAGACGACGGAGCACTCCTCCTGGGCCACGTCGTAAAGCTGCGCCATGGTGCCGATGCTCATCGCGGGCGGCAGCGCGAACTGGAGCATCAGCACGTACTGGTACAGCGGGTCGGGTGGCAGGAAGCCGAGCTCCGTCGCCGTCTTCACCACCGCCACCCCGACCACCGGCAGGATGATGTAGCGCACACAGACGATGGCCACGATCACCCACCTCGACATCGTCGTCTTGCGCAAGCCTTTGGTGAGGTTCCCTCCAAGGATGAGGGTGACACAGG | |||||||||
gi|159610924|gb|EG390625.1|EG390625 BG01022B1A08.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TTTTGAGACAGAGGGAGTAGC EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGTTACATGCATGAATTGGGATATATAGAAGTAGTTTCACATTGACGTGTCTTTGTGAATCGTTACCTACAGTACAGTACTACAGAATTGAAGTGTTGTCCTTCGCCTTCCTTTGCATGAAAATGCTTGCCAGTCACTCACTTACTGCCCCCTCTGTCTCAAAATATAAAACGTTTTTTTTGACACTACGAGGGAGTACTACTTACTAGCATCCATCACTGTGGCGAAGCTAAACCCAGACCCTTGTAGCGCGTCCTCCACGGCCTCGTCCACCATCCTCCCCATCTCAGGCGCCATGTGGCTGCTCCAGTCCCCGGCGACTCCCTTCCGGAAGAAGGCGTCGCTCCTGATGCCCGACGTGTTCCGCCGCCCGTCCCGGTTCGCCTCCATGTTCCTCAGCTTCTCCAGGCTACACAGCTCCACGATCGCCTGCACCACCCCCCGCTCCACCTCCTCGCCGGAGAAGGCGCACCCCATGAACTCCGCCATCGTCATCAGGCTCCCCGCGGGGTCACGGAGAAGCTCCTCGTATCTGAGGAACAGCACGTCGCGGCGGTGGCTCGCCTCCCAGTACTCGAGCACGTGCCGCCACTGCGGGCCGGNNNNNCACCGGCCGTCGCGGANNNNCTCGAACGCCTCCTGCAGCGAGAAGTGCTCGGAGTTCACTCCGATGCTCGC | |||||||||