| mature miRNA: GAAATTAATCATGGAAATGTA species: Limnanthes alba database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|166350417|gb|FD651243.1|FD651243 MF1_93_H08.b1_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1CH_CI_CJ_CK GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): ATTCTTCGCCGCTCTCTTTCACCGAAGAAGCTCTACTACAGCAGGTGAAGATCCAGCATCGAAGATGCCGTCCCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166350732|gb|FD649146.1|FD649146 MF1_68_H12.b1_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1BT_BU_BV_BW GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): ATTCTTCGCCGCTCTCTTTCAGCTCTACAGCAGGTGAAGATCCAGCATCGAAGATGCCGTCGCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGAAATTGCATGAAATTTGATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166355729|gb|FD655742.1|FD655742 MF1_148_G03.b1_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1E1_E2_E3_E GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): CACATGGGTTTTCCTGAGATGAGCTACTTGTTTCTCCTTGAAAGCAGACCGTTGCATTGGCAGTGTGTGGTTCACTCCACGGAACCAGTGTATGAGCTCCATTACATTTGTTCCTGAATCTACTGTTAGCTGTCTAGCATCTGACAGTTTGTTCATGGATGCGTAGGAGTTTTGGTTTTTTTTTTTTGTTTTTTTTTTTGCTCTTTCATTTAGTTTTTTAGTGCATTTTCAATATCTGGTGTTTGGTTAGTGCCTGCCTTGTAAATATAGACCTACAGAGTGGGAAGGAGCTATTGTGTTTTGAGCAAGGTGAGGATGTATTTTGGAATATAGTCGTTGAGCTGAGGGGGAAATAGTCATTCCTTTTACTGTATGTCTTCCTTTTATTTTGGAGATGAAGTCTTGTGTTTTGATATATTTTCTTGAGTAATTTTTTGTTTGAATTATAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166349796|gb|FD650883.1|FD650883 MF1_89_B07.b1_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1CD_CE_CF_CG GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): AGGTCATTCTTCGCCGCTCTCTTTCACCGAAGAAGCTCTACTACAGCAGGTGAAGATCCAGCATCGAAGATGCCGTCCCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGAAATTGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166346186|gb|FD645567.1|FD645567 MF1_27_B06.b2_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1AP_AQ_AR_AS GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): AAACCCTTCACATATTTAGGTTTTCTCCTTTTCTAACGATTAGGTCATTCTTCGCCGCTCTCTTTCAGCTCTACAGCAGGTGAAGATCCAGCATCGAAGATGCCGTCGCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGAAATTGCATGAAATTTGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166352687|gb|FD648923.1|FD648923 MF1_66_D09.b1_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1BT_BU_BV_BW GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): CCGCTCTCTTTCAGCTCTACAGCAGGTGAAGATCCAGCATCGAAGATGCCGTCGCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTCTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166346159|gb|FD647268.1|FD647268 MF1_47_D03.b1_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1B9_BA_BB_BC GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): ATTCTTCGCCGCTCTCTTTCACCGAAGAAGCTCTACAGCAGGTGAAGATCCAGCATCGAAGATGCCGTCGCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGAAATTGCACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166357567|gb|FD657670.1|FD657670 MF1_171_B12.b1_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1EP_EQ_ER_E GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): AAGAAGCTCTACTACAGCAGGTGAAGATCCAGCATCGAAGATGCCGTCCCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCATCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGAAATTGCATGAAATTTGATGATATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166358167|gb|FD658477.1|FD658477 MF1_180_F03.b1_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1EX_EY_EZ_F GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): ATTCTTCGCCGCTCTCTTTCACCGAAGAAGCTCTACTACAGCAGGTGAAGATCCAGCATCGAAGATGCCGTCCCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGAAATTGCATGAAATTTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166353517|gb|FD653386.1|FD653386 MF1_120_A01.b1_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1D9_DA_DB_D GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): ATTCTTCGCCGCTCTCTTTCACCGAAGAAGCTCTACTACAGCAGGTGAAGATCCAGCATCGAAGATGCCGTCCCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166344341|gb|FD643677.1|FD643677 MF1_5_F12.b2_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1A4_A5_A6_A71 GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): AGGTCATTCTTCGCCGCTCTCTTTCACCGAAGAAGCTCTACAGCAGGTGAAGATCCAGCATCGAAGATGCCGTCGCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGAAATTGCATGAAATTTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166357915|gb|FD658162.1|FD658162 MF1_176_H10.b1_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1ET_EU_EV_E GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): ATTCTTCGCCGCTCTCTTTCACCGAAGAAGCTCTACAACAGGTGAAGATCCAGCATCGAAGATGCCGTCGCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGAAATTGCATGAAATTTGATGATATCATTAGTATTTTTACAAAAAAAAAAAAAAAAAAAAAAAAAAACAGT | |||||||||
gi|166357946|gb|FD657761.1|FD657761 MF1_172_C03.b1_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1EP_EQ_ER_E GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): CAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGAAATTGCATGAAATTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166359123|gb|FD656160.1|FD656160 MF1_153_E08.b1_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1E5_E6_E7_E GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): CAGGTGAAGATCCAGCATCGAAGATGCCGTCGCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTAGCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGAAATTGCATGAAATTTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|166348043|gb|FD644619.1|FD644619 MF1_16_D12.b2_F001 Limnanthes alba EST Library MF1 Limnanthes alba cDNA clone MF1AD_AE_AF_AG GAAATTAATCATGGAAATGTA EST sequence (targeted fragment marked with yellow): ATTCTTCGCCGCTCTCTTTCACCGAAGAAGCTCTACTACAGCAGGTGAAGATCCAGCATCGAAGATGCCGTCCCACAAGACATTCATCATCAAGAAGAAACTGGCCAAGAAGATGAGGCAGAACAGGCCTATCCCTCACTGGATTCGTCTCCGCACAGACAACACCATCAGGTACAATGCTAAGCGTAGACACTGGCGCCGCACCAAATTAGGGTTTTAGACTACTGCTCATGGGTTTAGTCGACTTATTTACCCTCTTTCAGTTTGTGTTCTACCGTTAAAGTTTTGAATTTTTGGATTCTGGGAGCTTTTACTTTAATTTAATGTACGGTTCAATGGTTGATTTCTGAAATTGCATGAAATTTGACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||