| mature miRNA: ATAATAATAATAATAAT species: Linum usitatissimum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|295645728|gb|GW868179.1|GW868179 61C09 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence ATAATAATAATAATAAT EST sequence (targeted fragment marked with yellow): TCCCNGNCNCGACGTTGTAAANNCNNCNNNCCAGTGAANTGTAATACGACTCACTANANGGCGAATTGGNNNNNNNNNCCCCCCCCTNGANTTTTTTTTTTTTTTTTTTAATCAATAATAATAATTATTATTATTATCTTCTCTTCAATGACAAAATGCAATCAAATTGGAAACCAAGTTGATGGATGGGAATTATTCATTATTGACCTAGTAATTAACAGCCCAGATGCAGTACACAATAATAACTCAAAAACAACATTACAAGGTCATCCACTTCAATCATCAAACATCTCCCACACCGATCGATACACAGTAATAACTTGAAACAACATTTCAGAGCAGAGTACATCTAAGCAGTCGCTACGACCTCTCTTATCAAGGAGGAGGAGGCCGCTGACTTGCGGGCGGCGGCTGTCACCGGACGAGTCTCCTTGGTAACCAAATCGTAGGGACAAGAATTACGGATCGCGGAAAGCTCGTAGGGCGAGGTATCTGTAGCGAGCCACTGCTCCACGGTGAATAGCTGCTGTGAGCAGGAGCCGTGGACGCCGGTGGAGGTAGCCTCCACGTAGTTGCAGTACCAGCCGTGGTGGGCCCCTGATCCATCAGAGGTCAAGTTCAAGGCGCAGAACGGGGAGGTCAGGCAAGGCGCCCTGCCGCTGAAGATGTCCAGATTGCTCCTCTCGAAGTAGTTATGGCCCGTTTCCATCAGTCCTCCCCAAGCAACCAGATCTTTGATCTCCACGTAGTAGCCATTCTCGTCGAACAACCTGGCGCCGATCAACGAGTCTGTTCCTCCTTTGAAGATGGATCCGGTCCTCACGAACAGTGTGAAAACGCATTCGTCATC | |||||||||
gi|295646163|gb|GW866897.1|GW866897 47C02 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence ATAATAATAATAATAAT EST sequence (targeted fragment marked with yellow): ACACAGTGANCTTGCCCAAAGCAAAACCCNNTAAANCATAAACCACACGACAAANCAAGAAACAAAACGCACAGACGCTGGATGATCTTACAAGAAGAGCACAGACCAATTTTTATTCTTATTAGTAGAGTACATAACTCGACAATTACTTAAAACCAACTTCCTTGAACAAGATGGAAAAAGCTGTAATCCAAGAGAGACGGACGGAAGCTTAATAGCATGTAAACATTGCCAGTGGAGCAGAGAACATTGCCAGTGGAGCAGAGCAGAATCACAACAAAGAAAGGTGTGATGTAGGGAGAGGGTGAGACAATCTCATCACTAGAGACTAAAAACTGTGGATTTCTTCTTTTCATTTCATTTTTGGGTGAGAAAAACTGTGGCTTTCTGGTAACTGTATTCTCAGGGAAACATATGGCGATGATCTTGAGGTAAGTTCGAACAGACTTCACAAGCCTGCAAAAAAGGGGGTATTATGGGTGTGAAAAAAGGGGGGTGATCTTGCCAGAAGTAAGCCTGGAAAACAACCAAAAGACACAGGGTTTTTTTGTCTTCTTCTTCTTCTTCAATAGCTGGGCCTCTTCTGCACCAAGGCGTGCAAATTGGCCAAAAACTCAAACCAAAAACTTTGCTGGATCCTGCTGCTGCTGCTATGTTGTGGCTGCGAATGGCTTCTACAAAATCAGAGGTCGACCTAGCGGGTTTTGGATTAGGCGAGGATGTCACATCTCCACAAGCTTCCCACCAGAAGCTCAATCGTCTTGCTGCTAATGGAATTGCAATGTTGGAGGTTTAAACCCACAAGAGTCCTTCCAATTCTCTTTAGGCAAGGCAATGCCTTGTTGGAAAC | |||||||||
gi|295645929|gb|GW868380.1|GW868380 63E03 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence ATAATAATAATAATAAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTAAACANGAAAGCAGAACTATTCTGTACAGAAAATGTGCAGTNGCCAAAAAGACAAGAACTTGCTCAATAGAAAAACAAATGGNTAAGGCTAATAAAGAAGTAGGACCTGATCAAAAGTTAGCTAAGCTTTCCAAGCATAGTCATAATCGCTGTTAAAAAAGTCAGTATCCGTAAACTCGCTCGGAATATCTTGAATATCATCCTGCAAGTTCTGAGGAAGATCTACGGTCGCCGCCTTATGATTATTATGATTGTACTCACTCGTACCGCCCCCGCCAGCTGCAGAAGAATCGCTGGTCTCGGTGGTGGTAGCAGCAGGAGCCATAGCGGGAGCAGATTTGAAGCTGTTGCTCCGGCTTGGTGGCGCAGGACCGGTAACGCCTCCGGACATGGCCGGACTTGCTGCCGATTTGTTAACTACACCGTTCCTTCCTCCTGACCCGTTTGGTGCAGAAATCGAAGGCTGCGGCTGCTGCAAGTGATTATTCCCTCCCCGGTTGGTGTTACTCGACATGTCATGCAGAAGGTGCTGCATCATTTGCTGTTGCAACACCGCCGGATTACTGCCTTGAGGCGCAAGTAAGCCATTAGAGCTCAACGAACGCTGCTGTTGGAGCGACTGCTGGGGAGGTAGATACCCTCTTCCCCGTAAGTTCTGGACGGATCCCGATGCAAAAGCAGCAGCGGCATTACTGGGTCCTTGAAAACTCGGAGAAGGGCTACGGCGGGAATTGTTGAACGATGAAGTTGGTTGCTGCTGTTCTTGTTGGTGTGAGCTCGAGTTCGAATTCATCGAGTTTTGCCTCGAAAGAATAGACTGGTAGTTTGAGAGCGCCAATGCAGCCTGGGCCGGGCCGCTTAAAGCTCCTCGATTGTTGCTGTTCATGGCGTTGTTC | |||||||||
gi|295645728|gb|GW868179.1|GW868179 61C09 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence ATAATAATAATAATAAT EST sequence (targeted fragment marked with yellow): TCCCNGNCNCGACGTTGTAAANNCNNCNNNCCAGTGAANTGTAATACGACTCACTANANGGCGAATTGGNNNNNNNNNCCCCCCCCTNGANTTTTTTTTTTTTTTTTTTAATCAATAATAATAATTATTATTATTATCTTCTCTTCAATGACAAAATGCAATCAAATTGGAAACCAAGTTGATGGATGGGAATTATTCATTATTGACCTAGTAATTAACAGCCCAGATGCAGTACACAATAATAACTCAAAAACAACATTACAAGGTCATCCACTTCAATCATCAAACATCTCCCACACCGATCGATACACAGTAATAACTTGAAACAACATTTCAGAGCAGAGTACATCTAAGCAGTCGCTACGACCTCTCTTATCAAGGAGGAGGAGGCCGCTGACTTGCGGGCGGCGGCTGTCACCGGACGAGTCTCCTTGGTAACCAAATCGTAGGGACAAGAATTACGGATCGCGGAAAGCTCGTAGGGCGAGGTATCTGTAGCGAGCCACTGCTCCACGGTGAATAGCTGCTGTGAGCAGGAGCCGTGGACGCCGGTGGAGGTAGCCTCCACGTAGTTGCAGTACCAGCCGTGGTGGGCCCCTGATCCATCAGAGGTCAAGTTCAAGGCGCAGAACGGGGAGGTCAGGCAAGGCGCCCTGCCGCTGAAGATGTCCAGATTGCTCCTCTCGAAGTAGTTATGGCCCGTTTCCATCAGTCCTCCCCAAGCAACCAGATCTTTGATCTCCACGTAGTAGCCATTCTCGTCGAACAACCTGGCGCCGATCAACGAGTCTGTTCCTCCTTTGAAGATGGATCCGGTCCTCACGAACAGTGTGAAAACGCATTCGTCATC | |||||||||
gi|295645728|gb|GW868179.1|GW868179 61C09 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence ATAATAATAATAATAAT EST sequence (targeted fragment marked with yellow): TCCCNGNCNCGACGTTGTAAANNCNNCNNNCCAGTGAANTGTAATACGACTCACTANANGGCGAATTGGNNNNNNNNNCCCCCCCCTNGANTTTTTTTTTTTTTTTTTTAATCAATAATAATAATTATTATTATTATCTTCTCTTCAATGACAAAATGCAATCAAATTGGAAACCAAGTTGATGGATGGGAATTATTCATTATTGACCTAGTAATTAACAGCCCAGATGCAGTACACAATAATAACTCAAAAACAACATTACAAGGTCATCCACTTCAATCATCAAACATCTCCCACACCGATCGATACACAGTAATAACTTGAAACAACATTTCAGAGCAGAGTACATCTAAGCAGTCGCTACGACCTCTCTTATCAAGGAGGAGGAGGCCGCTGACTTGCGGGCGGCGGCTGTCACCGGACGAGTCTCCTTGGTAACCAAATCGTAGGGACAAGAATTACGGATCGCGGAAAGCTCGTAGGGCGAGGTATCTGTAGCGAGCCACTGCTCCACGGTGAATAGCTGCTGTGAGCAGGAGCCGTGGACGCCGGTGGAGGTAGCCTCCACGTAGTTGCAGTACCAGCCGTGGTGGGCCCCTGATCCATCAGAGGTCAAGTTCAAGGCGCAGAACGGGGAGGTCAGGCAAGGCGCCCTGCCGCTGAAGATGTCCAGATTGCTCCTCTCGAAGTAGTTATGGCCCGTTTCCATCAGTCCTCCCCAAGCAACCAGATCTTTGATCTCCACGTAGTAGCCATTCTCGTCGAACAACCTGGCGCCGATCAACGAGTCTGTTCCTCCTTTGAAGATGGATCCGGTCCTCACGAACAGTGTGAAAACGCATTCGTCATC | |||||||||