| mature miRNA: TTTTCTTCTTCTTCTTGCTGC species: Linum usitatissimum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|295645918|gb|GW868369.1|GW868369 63D04 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence TTTTCTTCTTCTTCTTGCTGC EST sequence (targeted fragment marked with yellow): TACGCTNTAATAATNCNAAATNGAATACANCAGAAAGCAGTACATTATTTCCCAGNNCAATCAAACAAACAACNGNAAGAGTAGAGTTNCATCATTAGCCAAATNGTCTTATAACTNCACCAGTAGTAGATCAGAGAAGAATGANGGAGCTGAAGATGGTGGCAAAAAGAAGAAGAAGAAATGAACATGATGGCGACAGGTTTATATACCCATATNNNNATTGCTTTCCTTTTCATGAGTTCTTTNACACGACGATCAGGTGTCTTTCTTTTGCCGTTTCTCTTCCTCGATCTTGGCCTTGAGATACGAGTAGATTGCCACTCCAGCAATGGCAACGCATGTTCCAATACCGGTTTGTGTCGAGATCTTGTTGCCAAAGATGACGATGGAGAATCCGATAACGAACACACGTTTCAACACATTGCCAACGGCATGAGTCAGAGGTGCAACCCTTTCCAGAGTGTTGGTGGCCAACTGGTTGTAGAGGTGATAGAAGAGTCCAACCCAGAAGAGGTCAGTGACGAACTTGGTCATGCCAACTTTGGTGATTGCATCATTGAAGCCATGTTGCATTAGCTTAGGTCCTTCCAAAATAATGGCTGGTGGGAGGCAGACAATGAGAGCAATGATTGAGATGTATGCATAGACATTGGTGCTGTCCATGTCAGTCATAGCCTTCTTGGAATAGATGCTACGGTAGGTGAAGGAGATGTTAGAAATCATGGCACTGATGAAGCCCAGCCAGTTGAACGACAGTTCGGTCAGGGAAGCCACGGAAACACCAAGAACAACGGGAGCAAGTGACAGCCACAGTGAAATGGGGATTGACTGTCCTAGAATGAACTGGGAAGCAGCAGCATTGAAGAACGGCTCAAGTGCTTTGATTGTGTGGGTGAAGGACACAGCAACAGCTGCAAAAGANCNTNNTGCCGAATTCCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGNCCNC | |||||||||
gi|295645918|gb|GW868369.1|GW868369 63D04 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence TTTTCTTCTTCTTCTTGCTGC EST sequence (targeted fragment marked with yellow): TACGCTNTAATAATNCNAAATNGAATACANCAGAAAGCAGTACATTATTTCCCAGNNCAATCAAACAAACAACNGNAAGAGTAGAGTTNCATCATTAGCCAAATNGTCTTATAACTNCACCAGTAGTAGATCAGAGAAGAATGANGGAGCTGAAGATGGTGGCAAAAAGAAGAAGAAGAAATGAACATGATGGCGACAGGTTTATATACCCATATNNNNATTGCTTTCCTTTTCATGAGTTCTTTNACACGACGATCAGGTGTCTTTCTTTTGCCGTTTCTCTTCCTCGATCTTGGCCTTGAGATACGAGTAGATTGCCACTCCAGCAATGGCAACGCATGTTCCAATACCGGTTTGTGTCGAGATCTTGTTGCCAAAGATGACGATGGAGAATCCGATAACGAACACACGTTTCAACACATTGCCAACGGCATGAGTCAGAGGTGCAACCCTTTCCAGAGTGTTGGTGGCCAACTGGTTGTAGAGGTGATAGAAGAGTCCAACCCAGAAGAGGTCAGTGACGAACTTGGTCATGCCAACTTTGGTGATTGCATCATTGAAGCCATGTTGCATTAGCTTAGGTCCTTCCAAAATAATGGCTGGTGGGAGGCAGACAATGAGAGCAATGATTGAGATGTATGCATAGACATTGGTGCTGTCCATGTCAGTCATAGCCTTCTTGGAATAGATGCTACGGTAGGTGAAGGAGATGTTAGAAATCATGGCACTGATGAAGCCCAGCCAGTTGAACGACAGTTCGGTCAGGGAAGCCACGGAAACACCAAGAACAACGGGAGCAAGTGACAGCCACAGTGAAATGGGGATTGACTGTCCTAGAATGAACTGGGAAGCAGCAGCATTGAAGAACGGCTCAAGTGCTTTGATTGTGTGGGTGAAGGACACAGCAACAGCTGCAAAAGANCNTNNTGCCGAATTCCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGNCCNC | |||||||||