| mature miRNA: CTTGGACTGAAGGGAGCTC species: Liriodendron tulipifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|165944994|gb|FD487510.1|FD487510 Ltu01b_3_F03_C012.b1 Liriodendron Flower Bud Library Liriodendron tulipifera cDNA clone 122M CTTGGACTGAAGG-GAGCTC EST sequence (targeted fragment marked with yellow): AGTTTTTTTTTTTTTTTTTTTTTTAAACTAACCTCTCTAACAGTTAAAATTTCTTGTCTTTTCCAAGTTACAGCACTAAAAATAAACCAATTGTATATGTAACAATTGCAAATGATGTTAATAACATTACCAACAATCAAACAATGATAAATTGGTCATCATCGTAAATAAGTAAACAAAATCACCACATACATCAAAAATCCATTCTGGATGTTCATTTCCACTGTTAAACAATTTCTGGAAAGTCTATTCTTCTGCCCAACTGGGCTTTCCCTCACCCGCCTGCTTTCCCTTGGATAATGTAGGGTGCAAAAAAAAATTCCAAATACCACAAGTACAGTTAAAAATCCAAAAACTCAAACCTGCCTTTGCCTCTTCTCTGTGTATTCAACTCCAAGCATTATTCCATTTTCAAGCTCTCTTTCAATCCAAGCATCTCCATCGTTGACCTGCCTTTGCCTCTTCTCTGTGTATTCAACTCCAAGCATTATTCCATTTTCGAGCTCTCTTTCAATCCAAGCATCTCCATCGTTGACCTGCCTTTGCCTCTTCTCTGTGTATTCAACTCCAAGCATTATTCCATTTTCGAGCTCTCTTTCAATCCAAGCATCTCCATCGTTGACATCATCCACAGCTGCTGCCTTCTTACCATTCATAGCTCTTTCGCATCTATTTCTCTTCAATTTAGATTTGATCCT | |||||||||
gi|165945795|gb|FD488333.1|FD488333 Ltu01b_17_B12_C012.b2 Liriodendron Flower Bud Library Liriodendron tulipifera cDNA clone 122 CTTGGACTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGGATGTACAGGCCATTGACCTTTCAACATAAACAACCAATCAATGTCTCATCAATAATTGGTATTCACATTTTCAACATAAACTGACTACAGCAAATACTTCAACCAGGAACTACTCTTATCTATATATAGAAAGGATAATAATTGAGGCAGTCAATCATCAATCACCTTTTATAATTACAAAATTGAACATTAAAATCATGTCTCATGCATAACAACCACCACATCAACTCTAAAAAATATAGATGCATATGAAACTAAGTACAGACATCAAAAAAAAAAAAATAAATGTTTTTCCCCCCATCAGCATGAGAGCTTCTGTTCGAGCTTCTTCAGTTTAAGGAACATGTAAATTCATCTCATAACCATCAAAATCAGCATTGTATGGATTATAAACAGATTCATTGAATCTCAATGTCCTCCAAGGCATTATCCTTTCCTACAAGCATGAAAGGGAGTAGTATATGAATATCAAGAAAAAAAAAACTGACCAAGGGAAAAATAATTTATCCTTCAGTGCATAAACTATCTAAATTGCCCTATGAAACATAATGGACATCTGATGCAGACTTGGCTGTCTATTGAAAAGAACAAGATCCCCCATCTTCCAAATGGCGTTCCACTATATGTCCATACTTGAGTTCATCAGAAAAAATGATTTCTATTTCCATATGCC | |||||||||
gi|165957866|gb|FD499443.1|FD499443 Ltu01b_200_C09_C012.g1 Liriodendron Flower Bud Library Liriodendron tulipifera cDNA clone 12 CTTGGACTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GTTCGATCTTCGCCTCCGCAGCAGCAAAATCCCACCAATCTTCTGGCTTTACTAGCCAAGTGAAATCCCACCAAAATTCTGGCTTCACAAGCCAAGCTCATTACTCAAACCCTCCACTTGGCACAGTGCCGTTAGGTGTCACCACCGGCGGGGGCGATCACCACCCAGAGCTGCAGCAGTTTGCTTTCCTGCAAGATCATCTCGTCCCTGTGGCCGCCACTGCCCCGAATGACTACAATCTGAATTTCGCAATCTCTTCCAGCCTCGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCACCATCTTCGTTGTTGCCTCACTTACAGAGGTTTCCTTCTTCGGTTGTCATCGACGGCCCACCACCGAACGTGCCATTTTTCATAGGGACCGCTGCCGCCGCATCTGCTGCCAGTGGTGGGGCCGAGAGTCAGTTCCCAGCTGGGTTTGATGGCCGCCTGCAGCTCTGCTACGGCGATGGGTGCAGGCATTCAGACCTGAAGGGAAAAGGGAAGAGCTGAAACCATAGGAATAGCTGCTGCTGCTGCGGAAACCCTCGCTCGCCTTCTTCCTTCCTGGTGTGCAGGACCTCTTTTTCCCAAATCCGGAGCTCGACAGTGGCACGTGTCCGGGTCCACCTT | |||||||||
gi|165947395|gb|FD489955.1|FD489955 Ltu01b_50_G04_C012.b2 Liriodendron Flower Bud Library Liriodendron tulipifera cDNA clone 122 CTTGGACTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTCCACAAAGACCCAAAGGGGCCCACCAGTCTTTTTCAATTACCTCACCACATTATTGCCTAAATACAAATACTTGTAGTGAAGGACTTGAAAAGTAAGAAAAACCTGATTCTAAAATCTCCACGAAACCTGAAAAAAAAGCCAAACCCCTCACATAGGATTCCAATACTTGACAAATCTCATCTGTTGCTTTGAGGGGCTCTTTTGTCTTGGGTTTTGGAAAGGGTGTCTAAGCATCTGCAATCTCAAAAGCCTCAACAAAGGCAAGGACAAATTCTGGGAGAGGGCTTCCAAGGGTAAAAGTGCCATCCAACGCGTTTGGCTGGCCCAATGCCTTCAATGCCAAATGAGCTGCTTTCTGTCCAAATATCATCATTGCGCCAAAGGGGGGCCCCATTCTCGGCGCTCCATCGATCTCTGCAACTTCCATCCC | |||||||||
gi|165951524|gb|FD495075.1|FD495075 Ltu01b_131_B05_C012.g1 Liriodendron Flower Bud Library Liriodendron tulipifera cDNA clone 12 CTTGGACTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGTCCACAAAAACCCAAAGGGGCCCACCAGTCTTTTTCAAATTACCTCACCACATTATTGCCTAAATACAAATACTTGTAGTGAAGGACTTGAAAAGTAGGAAAAACCTGATTCTAAAATCTCCACGAAACCTGAAAAAAAAGCCAAACACCTCACATAGGATTCCAATACTTGACAAATCTCATCTGTTGCTTTGATGGGCTCTTTTGTCTTGGGTTTTGGAAAGGCTGTCTAAGCATCTGCAATCTCAAAAGCCTCAGCAAAGGCAAGGACAAATTCTGGGAAAGGGCTTCCAAGGGTAAAAGTGCCATCCAACGCGTTTGGCTGGCCCAATGCCTTCAATGCCAAATGAGCTGCTTTCTGTCCAAATATCATCATTGCGCCAAAGGTGGGCCCCATTCTCGGCGCTCCATCGATCTCTGCAACTTCCATCCCAATAACGATCATCCCTGGGACAATCTCCCTCGTGAGCCTAACGATCGCATCCTCCGCCGTGTTCATATCCAAAGCCTTCATCCCCGGCACTGCATCGATCATTCCGATGCTCTTGAGTCTCTTCACCCCAGTTGCGCCAAACGGCCCATCATGACCGCAAGAACTCACAACCACCTTC | |||||||||