miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CTTGGGAATCTCTCTGATGCA
species: Liriodendron tulipifera
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|74065283|gb|DT580505.1|DT580505 ltu01-33ms1-a22 Ltu01 Liriodendron tulipifera cDNA clone ltu01-33ms1-a22 5', mRNA sequence 

CTTGGGAATCTCTCTGATGCA
||||.||||||   |||||||
GAACTCTTAGAATTACTACGT

EST sequence (targeted fragment marked with yellow):
GTCCAGTTCCGAACGGTGCATCATTAAGATTCTCAAGCCTGTGAAGAAAAAGAAGATAAAGAGGGAGATAAAAATTCTTCAGAACCTTTGTGGAGGCCCAAATATTGTGAAGCTGCTTGATATTGTTAGAGATCAGCACTCAAAAACTCCTAGCCTTATCTTTGAATACGTGAACACTACAGACTTCAAAATTCTGTACCCAACTCTGACGGATTATGATATACGCTACTACATTTATGAACTTCTCAAGGCATTGGATTATTGCCATTCACAAGGAATAATGCATCGAGATGTCAAGCCTCACAATGTTATGATAGATCACGAGCTGCGGAAACTTCGCTTAATTGACTGGGGACTTGCTGAATTCTACCACCCGGGTAAGGAGTACAATGTCCGCGTAGCTTCAAGATACTTTAAAGGCCCTGAACTCCTTGTTGATTTACAAGATTATGACTACTCGTTGGACCTTTGGAGCCTTGGTTGCATGTTTGCAGGAATGATTTTTCGCAAGGAGCCTTTCTTTTATGGCCATGACAACCATGATCAGCTTGTTAAAAATCGCCAAGGTGCTTGGGGACAGATGAATTAAATGCCTACTTGAATAAGTACGCTTAGACTCGATCTCAGCTGATGCTCTTGT


gi|165957965|gb|FD499173.1|FD499173 Ltu01b_195_D10_C012.g1 Liriodendron Flower Bud Library Liriodendron tulipifera cDNA clone 12 

CTTGGGAATCTCTCTGATGCA
||||.||||||   |||||||
GAACTCTTAGAATTACTACGT

EST sequence (targeted fragment marked with yellow):
TCCATACGCCGGTGGCGTAGCACTCTATAACCTTCATCACCTCACCGACACCAGATTCAGCATCGAAGATCTCCTTTCCTAATTACCAATCTGCCCATGTCGAAGGCCCGAGTATACACCGACGTCAACGTCCTCCGCCCCAAGGATTACTGGGACTACGAGTCCCTCACCGTCCAATGGGGTGATCAGGACGACTATGAGGTTGTTCGCAAAGTTGGGAGGGGGAAATACAGTGAGGTCTTTGAAGGCATAAACACGTCCAGTTCCGAACGGTGCATCATTAAGATTCTCAAGCCTGTGAAGAAAAAGAAGATAAAGAGGGAGATAAAAATTCTTCAGAACCTTTGTGGAGGCCCAAATATTGTGAAGCTGCTTGATATTGTTAGAGATCAGCACTCAAAAACTCCTAGCCTTATCTTTGAATACGTGAACACTACAGACTTCAAAATTCTGTACCCAACTCTGACGGATTATGATATACGCTACTACATTTATGAACTTCTCAAGGCATTGGATTATTGCCATTCACAAGGAATAATGCATCGAGATGTCAAGCCTCACAATGTTATGATAGATCACGAGCTGCGGAAACTTCGCTTAATTGACTGGGGACTTGCTGAATTCTACCACCCGGGTAAGGAGTACAATGTCCGCGTAGCTTCAAG


gi|165952130|gb|FD493201.1|FD493201 Ltu01b_102_B12_C012.g2 Liriodendron Flower Bud Library Liriodendron tulipifera cDNA clone 12 

CTTGGGAATCTCTCTGATGCA
||||.||||||| | |||||
GAACTCTTAGAGTGTCTACGA

EST sequence (targeted fragment marked with yellow):
ATTGAACTTCGTCTAATATGTAGTGCTTTCTGCTTCTTTATGGGATGCAGTGGCCATACATCAGAGATTCTCTATAAGTTTGATGATCTCCATTTCTGTAGGTTTCTGTGAGATCAGACTGTTTCTGTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACATCTTTGGGCTACTCGACCATCGGTCAATCGGGTTAGTTTTGTAAAGGTCACAGGAGAACAGTATGAGTAAATGGGGCCAGTGGTTCAGTAATCCTGACCTTTGTTCTGCTGTGCCCCACCTTGGATGGACTTTGCCCCCAGAACTCAGTAGATCGGGCCCTCTTTGTAATATTTTATTTTGTTTTAGTTTTTCTTTCCCCTTTTCCACTGAGTATTGACCTGCGCTGCGTTTCTTTAATTAGTGATCTTTTCTGGGGACCCATCAGAGGGCTGGGGTTCTAGCATCTGTGAGATTCTCAAGGCAAGGTCCACCCATCGTGTGGCCTATCAGATCGATGGTTTAGATCAAAGAGTATTGTAGTTGTATATAATATTTACACATTCTTCTTTTATGTCTCATTTTTTTTAGTCTTAAAAAAAAAAAAAAAAAA