miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTTGGATTGAAGGGAGCTCTA
species: Liriodendron tulipifera
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|51361999|gb|CV002776.1|CV002776 ltu01-21ms4-g03 Ltu01 Liriodendron tulipifera cDNA clone ltu01-21ms4-g03 5', mRNA sequence

TTTGGATTGAAGGGAGCTCTA
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AGACCTAGCTTCCCTCTAGCT

EST sequence (targeted fragment marked with yellow):
CCTACATCAAATCCGTTGCCGCCTCTGGCCTCAACATCCGATTCGTCGATCTCCCTTCGATCCAGATACCACCCTCTTCGGAGAGGCAGGACCCACAGACATTCATGCGCTTATTCATGGAAAGCCACAAGCCCCTTGGGAAGGACGCCCTTGCAAGAATCCAAACCTCAACAAAAACCCGTGTCACCGCATTGATCATCGACCTCTTCCTAACC