| mature miRNA: ACTCTCCCTCAAGGGCTTCTT species: Lotus japonicus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|45621683|gb|BP064937.1|BP064937 BP064937 Lotus japonicus mature nodule Lotus japonicus cDNA clone GENLf049a07 3', mRNA sequen ACTCTCCCTCAAGGGCTTCTT EST sequence (targeted fragment marked with yellow): GGAAATTTCTGCGAAATAAAATTCAGAAAAAATACGCAGAAAATAAACACATTTATAGTTGTGTCACAGCATACGAAGCCTAGCTGATCTTATTTAGTAATTATTTATATAAATAACATGTCAATTCAAGCTCGTTGCATCTTCATGTATTGGTGGTGGTGACCAAATTCTCCGATGTGGCATGGCGACTGGCAATGGCTTTTTAACATCTTCTTTTGAAGGATGGTACCTTCGATAATCTGTTGGTGGCGGCAATGGTGGTGGCCAGTAAACATGAGGTGGCGGTGTTCCCGACAATGGCTCGTTAACCTCTTCTATTGAAGGATGGTACTTTCGATAATTTTGTAGTGGCAGCCAAGACACTGGCGGTGGCCTTTGTCTCCGAAGTTGCGTGGCAACCGACAATGGCTCGTTAACCTCTTTTACTGAAGGAGAGTACCTTTGATATTCTGGTGGTGGTGGCCAGTAAATCCGATGTGGCGTGGTGACAGACATGGCTTATTAACCGCTTCAACAAGAAGCGCTTGAGGGACAGCATCAT | |||||||||
gi|223444339|gb|GO036094.1|GO036094 LJNC312TF JCVI-LJ3 Lotus japonicus cDNA 5', mRNA sequence ACTCTCCCTCAAGGGCTTCTT EST sequence (targeted fragment marked with yellow): GGGCTACCGCTACCGATATGGGATTCAAAACCTGATGGGTCAAATGAAAATACTCTAGCTGTCGGGGTGCCTTCTTATGTAGGTGAGACAAACAACTTTGCTGTAGAGGAAATACACACAGAGGATTTCCAATTGTCTGATTCTGAAATTCTAGAGAGAGTAAAGCAGAGACGTGGGAGGAAGAAGGGTGTCTCTGGTGTGCCACGGGGGAGGAAAACAGAGGCAAAGTCCAAACTGAAACCAGGACGACCACGAGGGAGAAAGGCTCAACCGAAGCAGCAGGTGGTGGATTTAACCATCTCAGATGACGAGTTTGATTGGGAGGATGCCTCAGCTAGGGCTCGACAGACTTGGAAGGTGGGGAAGCAGTTGGGTGTGGTTTATAAGGGACCGGAAGATGTAATAATACAGAGACTAGAGAAGCAGTTGAGGGAGAATCATCCAAACCTGCGATAGGTGTCGTCTGGCTGCAAAGGGAAGAAGATGGGATGGGGTGGTCGTGCTTTGGCAGGTTTGTGATTGATGAAGGAGTGGCGTGAGTGGTTACTGCTGGCTTTGGGGACATTGTGATCTTTACTGGTGAATCTGGTTTACGGTGTTATGATAAATCTGGTTTGTTGTTCAAGAGCATCAAAGTGTTTTTCTTTTCAAGGATCTTCGTTGGTTTCCATTGGG | |||||||||
gi|45623231|gb|BP066486.1|BP066486 BP066486 Lotus japonicus mature nodule Lotus japonicus cDNA clone GENLf076f10 3', mRNA sequen ACTCTCCCTCAAGGGCTTCTT EST sequence (targeted fragment marked with yellow): ATTATTTATATAAATAACATGTCCATTCAAGCTCGTTGCATCTTCATGTATTGGTGTGGGTGACCCAATTCTCCGATGTGGCATGGCGACTGGCAATGGCTTTTTAACATCTTCTTTTGAAGGATGGTACCTTCGATAATCTGTTGGTGGCGGCAATGGTGGTGGCCAGTAAACATGAGGTGGCGGTGTTCCCGACAATGGCTCGTTAACCTCTTCTATTGAAGGATGGTACTTTCGATAATTTTGTAGTGGCAGCCAAGACACTGGCGGTGGCCTTTGTCTCCGAAGTTGCGTGGCAACCGACAATGGCTCGTTAACCTCTTTTACTGAAGGAGAGTACCTTTGATATTCTGGTGGTGGTGGCCAGTAAATCCGATGTGGCGTGGTGACTGACAATGGCTTATTAACCGCTTCACAAGAAGCGCTTGAGGGACAGCATCATAGATGCAAGGAACACAACTAGAGATTAAGAAATTATAAGAAGTCATG | |||||||||
gi|293561124|gb|FS319784.1|FS319784 FS319784 LjFL3 Lotus japonicus cDNA clone LjFL3-005-BH02 5', mRNA sequence ACTCTCCCTCAAGGGCTTCTT EST sequence (targeted fragment marked with yellow): GGCCTTTGAGGATTGTGGATCTGGACTTTCTTGCTCATTTAGACATTCTTTTAGAGGAAGGATCAATGAGGCCCTTGAGGCAGAGGAACTAAAGAGGTCGAGGTTAGAAGAAGGGGTAATCAACGAGATGATTTACTAAAAATGGAGAGAATGTTGGGTTCAAAGGATGTTTGAATCGATATTTTGAGAGGCGTACCGCGTAACACATGGACAATATGATCTCTACCTCCTCTAATGATCATTATCACCGATAACGGTGCCACCATCCTCAACAAGATGCAAGTATTCCAACCCGCCACCAAGATGCTTGTCGAGCTCTCCAAGTCCCACGACTCTGACTCCAATGACGAGACTGCGACCATCCTCATCATTGTTGATATATGTCTTCCTCAAGCAGGATTTCAGGAGAGAAGAGTCACAATAATATTACATTTATACCAGCTATTTTAACATTAATTCAATCAT | |||||||||
gi|223444734|gb|GO035220.1|GO035220 LJNBB61TF JCVI-LJ3 Lotus japonicus cDNA 5', mRNA sequence ACTCTCCCTCAAGGGCTTCTT EST sequence (targeted fragment marked with yellow): GGAAGGACAAGGAGTTTGGCGGCCTTGGTATTAAGGACCTGGTTTTGTTTAATAAAGCTCTGATTGGCAAATGGAAGTGGCGGTATTTGAATGAACCTAGCAACTTCTGGTGTAGGGTGATCAAATCACAATTTGATTTTGGAACGTGTAAATCAGTGTGGTGGAGAGACGTTTTGTCAGTTTGCTCTGATGATCAGTGGTTTGAGTCCGGGAAATCAAAGCAAATTGGAGAAGGAGATGCAACTAGCTTCTGGTTGGATGACTGGCTGGGTTCAGGCCACCTGGAGGGGCGATTCCATAGACTATATAATTTGTCTAAGAAAAAATATGCATTGATCAAAGATCTTGGTGAATGGCGTAATGGCATTTGGTGTTGGGCATTTAATTGGAGGAGGACCTTGAGGGGGAGGGAAGTCATCTGGCTTCAGGATTTGTTAGACATTATTAATGTTGGGAGCGTGAGGGAGGGTAGACCAGATCGTTGGTTGTGGGAGCCAGGAGAGGAAGGGATTTATTCTGTTAACTCTGCTTACTCTTTTTTGCAGGTACCCACTTCAGTGGATCCGAACATTGACTTCCTGCAAGTCTGGTCTGGATTTTCCCCTTCAAACGTGAAGGCCTTTGCGTGGCGCTTACTGTTGGATAGAT | |||||||||
gi|45351454|gb|AV768180.1|AV768180 AV768180 Lotus japonicus Young plants (two-weeks old) Lotus japonicus cDNA clone MWM225g11_f ACTCTCCCTCAAGGGCTTCTT EST sequence (targeted fragment marked with yellow): ATTCGCTCAAGCAAACGGCGCACTCGAGCGCGTGCTTTCCGATCTTGTGTGCTTTGACCTCGGAGTATTCCAGGACAGGGAACGTGTCGATGACGGTTTGGTCGAGGCCACGCGCCACCCTCCGGGAGCGCGCGTGGGTGATGGGGAGGACGCTGTTGGGGTTTGAATCGGCGCACTGACGGATGTAGATGGAGAAGAAGCCCATGAGGAAGAGAGCAGCGACGAGTATGACGATGATTATAGCAAACGAAGGGTTGAATTCTTTGAAATCGGGGTCTACGGTTTGGTTTGTGTTTGGGGACTGTACGGCGGCGAGGGGGATCGACGGCGAGATTAGGAGGAGGAGAAGGAAGAGTGTTTGAGATTTTCTTTCCATTGTGTTG | |||||||||