| mature miRNA: AGCGGGTGTCTTCGCCTCTGA species: Lotus japonicus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|293557678|gb|FS329922.1|FS329922 FS329922 LjFL3 Lotus japonicus cDNA clone LjFL3-035-CC07 5', mRNA sequence AGCGGGTGTCTTCGCCTCTGA EST sequence (targeted fragment marked with yellow): AATAGTAGACTGCAATTTCCCAAGTCAATTATTCTGTTTAATCTCTTCATATTACTTTGACTTCCTTCTCTCCAGATCTCAAATCATCCATGGCGGCTGAGGACTCAAATTTCGATGAATATTGGTGGGATTACTTCTTTCCCCCTCCTCCTTCTCCTCCTCCAGCTCCAGCTGTAAATGATGTGCTTTGGGACCAGTTCTTAACGGAAAGGCCAGCCGGTAGCAATTCGCCATCAGAGAGCTCAAATTCCGATGAATGGTGGGATTGTTCACCGTTCGATTTGGATCCTCCTTCTCCTTCTTCTTCTCCTCCTCTACCTCCTCCACCTCCACCTCCACCTCCACCTCCAATGGGTTGGGAATATTTCTTTCCTCCTTTCCCAACGAGAATCCACGATGTGTTCTTGAGTTTCAGAGGGGAAGACACTCGTGCTTCCTTCACTTCACATCTCTATGCCGCTCTTCAAAACGCTGGAGTCAACGTTTTCCGGGACGACGATTCCCTTCCAAGGGGAGATCAAATTACAAATTCACTGATCGCAGCAATCGAACAGTCTGAAATTTCGGTTATCGTTTTCTCACCAAATTATGCGGATTCGCGGTGGTGTATGGAAGAGTTGGTGAAAATAATGGACTGTCACAGAACCATAGGCCAGGTGGTTCTGCCGGTGTTCTACGGCGTCGATCCCTCTGA | |||||||||
gi|45414169|gb|BP037009.1|BP037009 BP037009 Lotus corniculatus var. japonicus flower bud Lotus japonicus cDNA clone MFB041g04_f AGCGGGTGTCTTCGCCTCTGA EST sequence (targeted fragment marked with yellow): ATCAGACACGAATCCGATTGTACGGCACGTGTCACGGACGATCTTCTCATAGTCCACGTTGGCCTTGGTTGTGATCTCTCCAAAGACCATGACCATGTTAGTCTTGGTGCAAGTCTCACAGGCAACCTTGCTGTCAGGATCCTGCTCTAGACAGGCATCGAGCACCGCATCGGAGATCTGGTCGCACAGCTTGTCAGGGTGACCCTCGTTTACAGATTCAGAGGTGAATAGAAAGGTCTCTGCCATTTCTCAAGCTGGAGCAAGTGCAATGGAGGTTGAGAATTTGAAGGTGAAGACACTCGCTGGAACCAGACCGACCTTCCGA | |||||||||
gi|45633109|gb|BP076448.1|BP076448 BP076448 Lotus japonicus roots Lotus japonicus cDNA clone MR007a08_f 3', mRNA sequence AGCGGGTGTCTTCGCCTCTGA EST sequence (targeted fragment marked with yellow): CGCCAGCACCAATGTCCTCAGGGCGCTTGGTGAAGTGGCCATGCACACCCTGAGCAATATCAGGGCTCTGCTGCTCAATGTTCACCAAGACCTTGCATTTGTCAGCATCAAGACCCACATCATCAGACACGAATCCGATTGTACGGCACGTGTCACGGACGATCTTCTCATAGTCCACGTTGGCCTTGGTTGTGATCTCTCCAAAGACCATGACCATGTTAGTCTTGGTGCAAGTCTCACAGGCAACCTTGCTGTCAGGATCCTGCTCTAGACAGGCATCGAGCACCGCATCNGGAGATCTGGTCGCACAGCTTGTCNAGGGTGACCCTCGTTTACAGATTCAGAGGTGAATAGAAAGGTCTCTGCCATTTCTCAAGCTGGAGCAAGTGCATGGAGGTTGAGAATTTGAAGGTGAAGACACTCGCTGGAACCAGACCAGACCTTCCGAAAACGGGGCCCGT | |||||||||
gi|45618354|gb|BP061606.1|BP061606 BP061606 Lotus japonicus mature nodule Lotus japonicus cDNA clone GENf076b11 3', mRNA sequenc AGCGGGTGTCTTCGCCTCTGA EST sequence (targeted fragment marked with yellow): TGGTCGCCAGCACCGATGTCCTCAGGGCGCTTGGTGAAGTGGCCATGCACACCCTGAGCAATATCAGGGCTCTGCTGCTCGATGTTCACCAAGACCTTGCATTTGTCAGCATCAAGACCCACATCATCAGACACGAATCCGATTGTACGGCACGTGTCACGGACGATCTTCTCATAGTCCACGTTGGCCTTGGTTGTGATCTCTCCCAAGACCATGACCATGTTAGTCTTGGTGCAAGTCTCACAGGCAACCTTGCTGTCAGGATCCTGCTCTAGACAGGCATCGAGCACCGCATCGGAGATCTGGTCGCACAGCTTGTCCAGGGTGACACCTCGTTTACACGATTCCAGAGGTGAATAGAAAGGTCTCTCCCCATTTCTCCAAGCTCGAGCCAAGTGCCAATGGAGGTTGAGAATTTGAAGGTGAAGACACTCGCTGACCAGACCAGACCTTCCGAAA | |||||||||